Wall clock time and date at job start Mon Mar 30 2020 06:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46981 * 2 1 4 4 O 1.42905 * 109.47016 * 119.99600 * 2 1 3 5 5 C 1.35893 * 116.99336 * 84.85309 * 4 2 1 6 6 C 1.38796 * 120.03267 * 354.57877 * 5 4 2 7 7 C 1.38155 * 120.05536 * 180.02562 * 6 5 4 8 8 C 1.38199 * 120.10928 * 359.97438 * 7 6 5 9 9 C 1.38755 * 120.05243 * 359.72666 * 8 7 6 10 10 O 1.35902 * 120.02409 * 180.27651 * 9 8 7 11 11 C 1.38617 * 120.02583 * 174.60139 * 5 4 2 12 12 C 1.50703 * 120.05238 * 359.97438 * 11 5 4 13 13 C 1.53003 * 109.47175 * 89.99992 * 12 11 5 14 14 C 1.50696 * 109.46908 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00462 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99786 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99975 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00109 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47026 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47103 * 120.00258 * 18 16 14 21 21 H 1.48498 * 109.46862 * 240.00099 * 18 16 14 22 22 H 1.08996 * 109.46971 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47280 * 300.00371 * 1 2 3 24 24 H 1.09002 * 109.46674 * 60.00262 * 1 2 3 25 25 H 1.08992 * 109.47426 * 240.00147 * 2 1 3 26 26 H 1.08995 * 109.47165 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47347 * 299.99878 * 3 2 1 28 28 H 1.09004 * 109.47290 * 59.99746 * 3 2 1 29 29 H 1.07994 * 119.96799 * 0.02562 * 6 5 4 30 30 H 1.08003 * 119.94647 * 180.02562 * 7 6 5 31 31 H 1.07999 * 119.97235 * 179.97438 * 8 7 6 32 32 H 0.96701 * 113.99902 * 270.29533 * 10 9 8 33 33 H 1.09007 * 109.46902 * 330.00212 * 12 11 5 34 34 H 1.08998 * 109.47377 * 210.00359 * 12 11 5 35 35 H 1.08996 * 109.46633 * 60.00056 * 13 12 11 36 36 H 1.09002 * 109.47088 * 299.99966 * 13 12 11 37 37 H 0.97001 * 119.99622 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1095 -2.0269 1.0989 6 6 1.6544 -2.7027 -0.0247 7 6 1.7586 -4.0786 -0.0940 8 6 2.3164 -4.7853 0.9544 9 6 2.7785 -4.1137 2.0773 10 8 3.3320 -4.8088 3.1056 11 6 2.6689 -2.7336 2.1521 12 6 3.1639 -2.0023 3.3733 13 6 2.0285 -1.8840 4.3920 14 6 2.5233 -1.1522 5.6129 15 1 3.5453 -0.8057 5.6576 16 6 1.6711 -0.9240 6.6724 17 7 0.4265 -1.3454 6.6178 18 14 2.2842 -0.0162 8.1856 19 1 3.7115 0.3491 7.9992 20 1 1.4792 1.2158 8.3837 21 1 2.1495 -0.8925 9.3769 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.1299 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.2186 -2.1526 -0.8454 30 1 1.4043 -4.6027 -0.9694 31 1 2.3964 -5.8609 0.8981 32 1 2.6955 -5.0931 3.7758 33 1 3.5015 -1.0059 3.0881 34 1 3.9932 -2.5540 3.8159 35 1 1.6910 -2.8804 4.6771 36 1 1.1992 -1.3322 3.9493 37 1 -0.1731 -1.1846 7.3631 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260157860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:53 Heat of formation + Delta-G solvation = -77.154909 kcal Electronic energy + Delta-G solvation = -18493.616842 eV Core-core repulsion = 15621.842482 eV Total energy + Delta-G solvation = -2871.774359 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.20372 -38.30985 -35.72720 -34.07830 -32.94070 -31.69864 -29.02677 -28.57310 -27.16693 -24.92286 -22.99823 -22.00953 -20.68540 -20.13986 -18.21876 -16.75513 -16.29414 -16.10376 -15.28360 -15.25442 -14.44880 -14.32104 -14.09644 -13.53392 -12.93711 -12.61398 -12.58009 -12.41714 -12.23585 -12.01058 -11.73577 -11.61681 -11.30160 -10.97729 -10.88127 -10.66064 -10.56285 -10.49944 -10.09431 -9.68858 -9.54826 -8.99342 -8.28900 -8.13640 -7.70593 -5.94232 -3.95739 1.56399 1.76184 3.34543 3.41762 3.43489 3.46874 3.95799 4.51168 4.72674 4.82706 4.96189 5.07572 5.14931 5.29507 5.40156 5.41598 5.55748 5.59078 5.77486 5.79635 5.81186 5.90893 6.16682 6.23724 6.28525 6.36665 6.65294 6.71989 6.82402 6.87629 7.00821 7.22833 7.75093 7.79019 7.92605 8.06695 8.10404 8.49591 9.11143 9.67537 11.16972 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.007151 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.902760 B = 3914.458098 C = 5039.615942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.076 3.924 3 C -0.148 4.148 4 O -0.294 6.294 5 C 0.145 3.855 6 C -0.223 4.223 7 C -0.085 4.085 8 C -0.185 4.185 9 C 0.140 3.860 10 O -0.494 6.494 11 C -0.117 4.117 12 C -0.068 4.068 13 C 0.036 3.964 14 C -0.514 4.514 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.395 0.605 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.010 0.990 36 H 0.017 0.983 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 -1.437 -15.285 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.020 3.980 3 C -0.206 4.206 4 O -0.207 6.207 5 C 0.099 3.901 6 C -0.241 4.241 7 C -0.103 4.103 8 C -0.204 4.204 9 C 0.095 3.905 10 O -0.305 6.305 11 C -0.118 4.118 12 C -0.106 4.106 13 C -0.001 4.001 14 C -0.553 4.553 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.252 0.748 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.028 0.972 36 H 0.035 0.965 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.050 -1.204 -15.324 15.407 hybrid contribution -0.422 0.293 0.920 1.054 sum 0.628 -0.911 -14.404 14.446 Atomic orbital electron populations 1.22384 0.95261 1.03123 1.03010 1.22389 0.94344 0.93720 0.87545 1.21839 1.02040 0.93743 1.02937 1.86263 1.80609 1.16088 1.37762 1.18619 0.95183 0.82813 0.93434 1.21193 1.08426 0.95507 0.99008 1.20593 0.98508 0.93232 0.97954 1.21217 1.03697 1.00057 0.95407 1.17994 0.94804 0.88812 0.88908 1.84696 1.37524 1.73531 1.34756 1.20042 1.01598 0.93103 0.97051 1.20570 1.00290 0.98119 0.91591 1.18978 0.92538 0.96587 0.91955 1.21298 0.97276 1.35890 1.00800 0.92619 1.25010 0.94899 0.95993 0.98553 1.69985 1.04934 1.47023 1.31677 0.86563 0.78979 0.79556 0.83084 1.19717 1.21090 1.21071 0.91845 0.91018 0.91494 0.91371 0.91742 0.90941 0.91096 0.85669 0.86092 0.85933 0.74845 0.91921 0.91814 0.97202 0.96452 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.17 37.16 0.34 -1.87 16 2 C 0.08 1.02 2.85 -26.73 -0.08 0.94 16 3 C -0.15 -1.70 9.56 37.16 0.36 -1.34 16 4 O -0.29 -5.35 8.84 -19.40 -0.17 -5.52 16 5 C 0.15 2.65 6.57 -39.24 -0.26 2.40 16 6 C -0.22 -3.34 8.24 -39.41 -0.32 -3.67 16 7 C -0.08 -1.18 10.04 -39.63 -0.40 -1.58 16 8 C -0.19 -2.83 9.98 -39.40 -0.39 -3.22 16 9 C 0.14 2.53 6.67 -39.24 -0.26 2.27 16 10 O -0.49 -8.62 12.54 -19.43 -0.24 -8.86 16 11 C -0.12 -2.35 5.16 -104.33 -0.54 -2.89 16 12 C -0.07 -1.56 4.84 -27.88 -0.14 -1.70 16 13 C 0.04 0.98 4.96 -27.88 -0.14 0.84 16 14 C -0.51 -14.99 9.11 -34.44 -0.31 -15.30 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 18 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H 0.06 0.81 6.90 -51.93 -0.36 0.45 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.79 6.31 -51.93 -0.33 0.46 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.13 1.55 5.42 -52.49 -0.28 1.26 16 30 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.39 5.66 9.06 45.56 0.41 6.08 16 33 H 0.06 1.45 7.53 -51.93 -0.39 1.06 16 34 H 0.06 1.45 7.52 -51.93 -0.39 1.06 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -32.92 310.04 -6.95 -39.87 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.69 Total: 2.96 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -2.24 Total: -23.57 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.74 Total: -26.61 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.42 Total: -14.39 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.92 -6.95 -39.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260157860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.286 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds