Wall clock time and date at job start Mon Mar 30 2020 06:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46981 * 2 1 4 4 O 1.42905 * 109.47016 * 119.99600 * 2 1 3 5 5 C 1.35893 * 116.99336 * 84.85309 * 4 2 1 6 6 C 1.38796 * 120.03267 * 354.57877 * 5 4 2 7 7 C 1.38155 * 120.05536 * 180.02562 * 6 5 4 8 8 C 1.38199 * 120.10928 * 359.97438 * 7 6 5 9 9 C 1.38755 * 120.05243 * 359.72666 * 8 7 6 10 10 O 1.35902 * 120.02409 * 180.27651 * 9 8 7 11 11 C 1.38617 * 120.02583 * 174.60139 * 5 4 2 12 12 C 1.50703 * 120.05238 * 359.97438 * 11 5 4 13 13 C 1.53003 * 109.47175 * 89.99992 * 12 11 5 14 14 C 1.50696 * 109.46908 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00462 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99786 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99975 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00109 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47026 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47103 * 120.00258 * 18 16 14 21 21 H 1.48498 * 109.46862 * 240.00099 * 18 16 14 22 22 H 1.08996 * 109.46971 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47280 * 300.00371 * 1 2 3 24 24 H 1.09002 * 109.46674 * 60.00262 * 1 2 3 25 25 H 1.08992 * 109.47426 * 240.00147 * 2 1 3 26 26 H 1.08995 * 109.47165 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47347 * 299.99878 * 3 2 1 28 28 H 1.09004 * 109.47290 * 59.99746 * 3 2 1 29 29 H 1.07994 * 119.96799 * 0.02562 * 6 5 4 30 30 H 1.08003 * 119.94647 * 180.02562 * 7 6 5 31 31 H 1.07999 * 119.97235 * 179.97438 * 8 7 6 32 32 H 0.96701 * 113.99902 * 270.29533 * 10 9 8 33 33 H 1.09007 * 109.46902 * 330.00212 * 12 11 5 34 34 H 1.08998 * 109.47377 * 210.00359 * 12 11 5 35 35 H 1.08996 * 109.46633 * 60.00056 * 13 12 11 36 36 H 1.09002 * 109.47088 * 299.99966 * 13 12 11 37 37 H 0.97001 * 119.99622 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1095 -2.0269 1.0989 6 6 1.6544 -2.7027 -0.0247 7 6 1.7586 -4.0786 -0.0940 8 6 2.3164 -4.7853 0.9544 9 6 2.7785 -4.1137 2.0773 10 8 3.3320 -4.8088 3.1056 11 6 2.6689 -2.7336 2.1521 12 6 3.1639 -2.0023 3.3733 13 6 2.0285 -1.8840 4.3920 14 6 2.5233 -1.1522 5.6129 15 1 3.5453 -0.8057 5.6576 16 6 1.6711 -0.9240 6.6724 17 7 0.4265 -1.3454 6.6178 18 14 2.2842 -0.0162 8.1856 19 1 3.7115 0.3491 7.9992 20 1 1.4792 1.2158 8.3837 21 1 2.1495 -0.8925 9.3769 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.1299 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.2186 -2.1526 -0.8454 30 1 1.4043 -4.6027 -0.9694 31 1 2.3964 -5.8609 0.8981 32 1 2.6955 -5.0931 3.7758 33 1 3.5015 -1.0059 3.0881 34 1 3.9932 -2.5540 3.8159 35 1 1.6910 -2.8804 4.6771 36 1 1.1992 -1.3322 3.9493 37 1 -0.1731 -1.1846 7.3631 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260157860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:53 Heat of formation + Delta-G solvation = -98.754212 kcal Electronic energy + Delta-G solvation = -18494.553458 eV Core-core repulsion = 15621.842482 eV Total energy + Delta-G solvation = -2872.710975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.47644 -39.58343 -36.98742 -35.98910 -34.34956 -33.42361 -30.32534 -30.24872 -28.12209 -26.87150 -24.18873 -23.75752 -21.97927 -21.67364 -19.47135 -18.58354 -17.96420 -17.41608 -16.60938 -16.57797 -16.34028 -15.62786 -15.27364 -14.77155 -14.57410 -14.44455 -14.11156 -13.60553 -13.42409 -13.28441 -13.13420 -12.95894 -12.82160 -12.59041 -12.50954 -12.31969 -11.84155 -11.74820 -11.66707 -11.54697 -11.47576 -11.02310 -10.56878 -9.48149 -9.03654 -8.20476 -6.32072 0.28982 0.49357 1.37828 1.38442 1.52373 2.29153 2.39941 2.70458 3.11486 3.48071 3.82314 3.92220 4.00304 4.04007 4.14697 4.22411 4.39023 4.59823 4.68313 4.70405 4.81367 4.84828 4.85747 4.88482 4.95992 5.20715 5.23735 5.27544 5.37508 5.42716 5.47266 5.52338 5.74717 5.79032 5.85694 6.23779 6.59723 6.81779 6.83301 7.36500 8.91073 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.007151 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.902760 B = 3914.458098 C = 5039.615942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.065 3.935 3 C -0.146 4.146 4 O -0.330 6.330 5 C 0.131 3.869 6 C -0.218 4.218 7 C -0.068 4.068 8 C -0.185 4.185 9 C 0.126 3.874 10 O -0.506 6.506 11 C -0.164 4.164 12 C -0.048 4.048 13 C 0.051 3.949 14 C -0.542 4.542 15 H 0.055 0.945 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.965 3.035 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.274 1.274 22 H 0.057 0.943 23 H 0.046 0.954 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.050 0.950 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.150 0.850 32 H 0.403 0.597 33 H 0.048 0.952 34 H 0.055 0.945 35 H -0.009 1.009 36 H -0.018 1.018 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.497 -1.713 -17.148 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.010 3.990 3 C -0.203 4.203 4 O -0.244 6.244 5 C 0.086 3.914 6 C -0.237 4.237 7 C -0.085 4.085 8 C -0.203 4.203 9 C 0.082 3.918 10 O -0.318 6.318 11 C -0.165 4.165 12 C -0.085 4.085 13 C 0.014 3.986 14 C -0.580 4.580 15 H 0.073 0.927 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.789 3.211 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.199 1.199 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.121 0.879 25 H 0.110 0.890 26 H 0.079 0.921 27 H 0.127 0.873 28 H 0.069 0.931 29 H 0.174 0.826 30 H 0.185 0.815 31 H 0.168 0.832 32 H 0.262 0.738 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.009 0.991 36 H 0.000 1.000 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.909 -1.483 -17.195 17.283 hybrid contribution -0.428 0.362 1.410 1.517 sum 0.481 -1.120 -15.785 15.832 Atomic orbital electron populations 1.22372 0.94529 1.02927 1.03531 1.22793 0.95017 0.94335 0.86903 1.21889 1.01847 0.92902 1.03703 1.86230 1.81079 1.16504 1.40599 1.18845 0.95326 0.83130 0.94115 1.21541 1.07404 0.96288 0.98447 1.21159 0.96012 0.92810 0.98557 1.21532 1.02859 1.01492 0.94465 1.18276 0.95269 0.88296 0.89993 1.84650 1.38401 1.73428 1.35307 1.19977 1.05180 0.94305 0.97060 1.20141 0.98343 0.97792 0.92237 1.18736 0.92808 0.94523 0.92488 1.21678 0.97526 1.36720 1.02096 0.92698 1.25958 0.94952 0.96642 1.01993 1.70111 1.06197 1.47882 1.32938 0.85401 0.78728 0.78294 0.78648 1.18856 1.20204 1.19916 0.92373 0.93526 0.87876 0.89002 0.92113 0.87339 0.93078 0.82635 0.81509 0.83205 0.73829 0.93360 0.92609 0.99052 0.99961 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.09 9.17 71.98 0.66 -3.43 16 2 C 0.06 1.66 2.85 30.60 0.09 1.74 16 3 C -0.15 -3.23 9.56 71.98 0.69 -2.54 16 4 O -0.33 -12.36 8.84 -92.35 -0.82 -13.18 16 5 C 0.13 4.84 6.57 22.49 0.15 4.99 16 6 C -0.22 -6.01 8.24 22.38 0.18 -5.83 16 7 C -0.07 -1.63 10.04 22.24 0.22 -1.40 16 8 C -0.19 -5.21 9.98 22.38 0.22 -4.99 16 9 C 0.13 4.59 6.67 22.49 0.15 4.74 16 10 O -0.51 -18.03 12.54 -92.45 -1.16 -19.19 16 11 C -0.16 -6.83 5.16 -19.67 -0.10 -6.93 16 12 C -0.05 -2.32 4.84 29.85 0.14 -2.17 16 13 C 0.05 2.95 4.96 29.85 0.15 3.10 16 14 C -0.54 -32.90 9.11 25.60 0.23 -32.67 16 15 H 0.05 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.00 0.13 5.46 84.65 0.46 0.60 16 17 N -0.93 -58.33 13.29 21.45 0.28 -58.04 16 18 Si 0.97 45.94 29.54 68.60 2.03 47.96 16 19 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 H 0.06 1.39 6.90 -2.39 -0.02 1.37 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.09 1.88 6.31 -2.39 -0.02 1.87 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.16 3.24 5.42 -2.91 -0.02 3.23 16 30 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 32 H 0.40 12.12 9.06 -74.06 -0.67 11.45 16 33 H 0.05 2.40 7.53 -2.38 -0.02 2.38 16 34 H 0.06 2.70 7.52 -2.39 -0.02 2.68 16 35 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 36 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 37 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -74.50 310.04 3.98 -70.52 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.39 Total: 16.72 kcal Atomic # 6 Polarization: -48.04 SS G_CDS: 3.25 Total: -44.79 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.28 Total: -58.04 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.98 Total: -32.37 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -74.50 3.98 -70.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260157860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.234 kcal (2) G-P(sol) polarization free energy of solvation -74.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds