Wall clock time and date at job start Mon Mar 30 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47435 * 2 1 4 4 C 1.53001 * 109.47200 * 239.99637 * 2 1 3 5 5 C 1.50701 * 109.47055 * 120.00145 * 2 1 3 6 6 C 1.38289 * 119.92586 * 239.97095 * 5 2 1 7 7 C 1.38527 * 119.99768 * 179.74317 * 6 5 2 8 8 O 1.35993 * 120.07054 * 180.27989 * 7 6 5 9 9 C 1.39195 * 119.85129 * 0.53662 * 7 6 5 10 10 O 1.35995 * 120.07142 * 179.74206 * 9 7 6 11 11 C 1.38517 * 119.85715 * 359.46556 * 9 7 6 12 12 C 1.50704 * 120.00184 * 180.29858 * 11 9 7 13 13 C 1.50705 * 109.47071 * 280.00145 * 12 11 9 14 14 H 1.07994 * 119.99773 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00050 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99853 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00169 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47075 * 89.99460 * 17 15 13 19 19 H 1.48499 * 109.46942 * 209.99874 * 17 15 13 20 20 H 1.48501 * 109.46607 * 329.99568 * 17 15 13 21 21 C 1.38206 * 119.92813 * 60.00082 * 5 2 1 22 22 H 1.09003 * 109.46557 * 300.00209 * 1 2 3 23 23 H 1.08999 * 109.46774 * 59.99612 * 1 2 3 24 24 H 1.08998 * 109.47331 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47208 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.46930 * 299.99966 * 3 2 1 27 27 H 1.08998 * 109.46984 * 60.00156 * 3 2 1 28 28 H 1.09007 * 109.47312 * 300.00525 * 4 2 1 29 29 H 1.09003 * 109.46499 * 59.99935 * 4 2 1 30 30 H 1.08992 * 109.47623 * 180.02562 * 4 2 1 31 31 H 1.07992 * 119.99766 * 0.02562 * 6 5 2 32 32 H 0.96700 * 113.99787 * 270.25131 * 8 7 6 33 33 H 0.96700 * 114.00111 * 269.72701 * 10 9 7 34 34 H 1.09002 * 109.47028 * 40.00433 * 12 11 9 35 35 H 1.09002 * 109.46803 * 160.00450 * 12 11 9 36 36 H 0.96995 * 119.99994 * 180.02562 * 16 15 13 37 37 H 1.08007 * 119.92919 * 359.97057 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 2.8278 -0.0371 2.1395 7 6 3.2859 -0.6871 3.2737 8 8 4.0636 -0.0247 4.1714 9 6 2.9530 -2.0213 3.4897 10 8 3.4047 -2.6654 4.5991 11 6 2.1559 -2.6900 2.5753 12 6 1.7880 -4.1325 2.8093 13 6 2.9367 -5.0171 2.3980 14 1 3.8427 -4.5785 2.0067 15 6 2.8310 -6.3863 2.5213 16 7 1.7278 -6.9203 2.9983 17 14 4.2551 -7.4827 2.0122 18 1 5.1549 -7.6967 3.1739 19 1 3.7301 -8.7908 1.5449 20 1 5.0122 -6.8319 0.9128 21 6 1.6975 -2.0336 1.4476 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.6766 -1.7490 -1.2492 29 1 1.6766 -0.2075 -2.1392 30 1 3.1299 -0.7218 -1.2490 31 1 3.0880 0.9968 1.9673 32 1 5.0116 -0.0850 3.9905 33 1 4.2565 -3.1069 4.4781 34 1 1.5721 -4.2854 3.8668 35 1 0.9068 -4.3831 2.2186 36 1 1.6535 -7.8835 3.0854 37 1 1.0761 -2.5562 0.7354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260163874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:44 Heat of formation + Delta-G solvation = -87.827571 kcal Electronic energy + Delta-G solvation = -18591.474110 eV Core-core repulsion = 15719.236950 eV Total energy + Delta-G solvation = -2872.237160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.95268 -37.69290 -36.49237 -34.75206 -33.06169 -30.79775 -28.46475 -27.60749 -27.11328 -26.43336 -23.31797 -22.29623 -20.99288 -18.69730 -17.91316 -16.89214 -16.33317 -15.75993 -15.62805 -14.59534 -14.42971 -14.19231 -14.05591 -13.53647 -12.85372 -12.57783 -12.34465 -12.19226 -11.94811 -11.77231 -11.59408 -11.41287 -11.32298 -11.18000 -10.86768 -10.74966 -10.59841 -10.45711 -10.31611 -9.98476 -9.50514 -9.21672 -8.45741 -7.94160 -7.73327 -6.07451 -4.12186 1.73165 1.91114 3.26018 3.33040 3.35405 4.07111 4.40552 4.52773 4.81098 4.93913 4.97068 5.11510 5.27395 5.46778 5.57521 5.63940 5.71939 5.80298 5.85060 5.93468 5.99682 6.06195 6.11227 6.18717 6.34598 6.40553 6.43468 6.57879 6.82635 6.97838 7.06980 7.34969 7.55134 7.75528 7.87489 7.91823 8.26259 8.48089 8.92077 9.51329 11.02559 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020969 B = 0.006899 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.952209 B = 4057.445793 C = 4787.575784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.026 4.026 3 C -0.141 4.141 4 C -0.138 4.138 5 C -0.070 4.070 6 C -0.159 4.159 7 C 0.070 3.930 8 O -0.494 6.494 9 C 0.077 3.923 10 O -0.482 6.482 11 C -0.044 4.044 12 C 0.052 3.948 13 C -0.513 4.513 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.894 3.106 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.114 4.114 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.125 0.875 32 H 0.378 0.622 33 H 0.383 0.617 34 H 0.038 0.962 35 H 0.028 0.972 36 H 0.262 0.738 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 13.486 -5.873 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 C -0.198 4.198 4 C -0.195 4.195 5 C -0.070 4.070 6 C -0.178 4.178 7 C 0.025 3.975 8 O -0.302 6.302 9 C 0.031 3.969 10 O -0.291 6.291 11 C -0.045 4.045 12 C 0.015 3.985 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.132 4.132 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.232 0.768 33 H 0.239 0.761 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.171 13.661 -5.311 14.704 hybrid contribution 1.721 -1.036 -0.583 2.091 sum 2.892 12.626 -5.894 14.231 Atomic orbital electron populations 1.21890 0.93887 1.02375 1.01399 1.19430 0.95590 0.94624 0.92920 1.21943 1.01040 0.95333 1.01519 1.21888 1.01192 1.00646 0.95817 1.19567 0.98020 0.94028 0.95420 1.21033 1.02566 1.00311 0.93867 1.18803 0.97744 0.90718 0.90203 1.84882 1.20448 1.74073 1.50809 1.18662 0.99962 0.89429 0.88832 1.84792 1.41657 1.70764 1.31915 1.20969 0.93543 0.98623 0.91314 1.18266 0.97163 0.84451 0.98579 1.20944 1.00411 0.90763 1.42963 0.92823 1.24993 0.95874 0.98095 0.95156 1.69955 1.26101 1.11594 1.45239 0.86566 0.82389 0.80056 0.78855 1.20555 1.21112 1.19900 1.20852 1.01345 0.93356 0.97677 0.92601 0.92713 0.92071 0.92456 0.92738 0.92397 0.91959 0.92772 0.92604 0.85731 0.76815 0.76116 0.94372 0.95403 0.92776 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.29 37.16 0.31 -1.36 16 2 C -0.03 -0.33 0.85 -155.66 -0.13 -0.46 16 3 C -0.14 -1.53 7.13 37.16 0.26 -1.27 16 4 C -0.14 -1.68 8.29 37.16 0.31 -1.38 16 5 C -0.07 -1.13 4.76 -104.61 -0.50 -1.63 16 6 C -0.16 -2.58 8.91 -39.46 -0.35 -2.93 16 7 C 0.07 1.26 6.72 -39.12 -0.26 1.00 16 8 O -0.49 -7.90 13.29 -34.20 -0.45 -8.35 16 9 C 0.08 1.59 6.68 -39.12 -0.26 1.32 16 10 O -0.48 -10.05 12.52 -34.20 -0.43 -10.48 16 11 C -0.04 -0.96 5.09 -104.50 -0.53 -1.50 16 12 C 0.05 1.35 4.77 -29.03 -0.14 1.21 16 13 C -0.51 -13.95 9.09 -34.44 -0.31 -14.26 16 14 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 17 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.11 -2.17 8.33 -39.57 -0.33 -2.50 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.77 7.38 -51.93 -0.38 0.39 16 25 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.63 7.51 -51.93 -0.39 0.24 16 28 H 0.06 0.82 7.38 -51.92 -0.38 0.43 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.12 1.73 5.89 -52.49 -0.31 1.42 16 32 H 0.38 4.10 9.06 45.56 0.41 4.52 16 33 H 0.38 6.64 9.06 45.56 0.41 7.05 16 34 H 0.04 1.08 7.85 -51.93 -0.41 0.67 16 35 H 0.03 0.75 8.00 -51.93 -0.42 0.34 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.12 2.24 7.06 -52.48 -0.37 1.87 16 LS Contribution 307.77 15.07 4.64 4.64 Total: -1.00 -31.61 307.77 -6.44 -38.06 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -3.88 Total: 7.69 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -2.04 Total: -22.15 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.74 Total: -25.40 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.88 Total: -18.83 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.61 -6.44 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260163874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.771 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds