Wall clock time and date at job start Mon Mar 30 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47435 * 2 1 4 4 C 1.53001 * 109.47200 * 239.99637 * 2 1 3 5 5 C 1.50701 * 109.47055 * 120.00145 * 2 1 3 6 6 C 1.38289 * 119.92586 * 239.97095 * 5 2 1 7 7 C 1.38527 * 119.99768 * 179.74317 * 6 5 2 8 8 O 1.35993 * 120.07054 * 180.27989 * 7 6 5 9 9 C 1.39195 * 119.85129 * 0.53662 * 7 6 5 10 10 O 1.35995 * 120.07142 * 179.74206 * 9 7 6 11 11 C 1.38517 * 119.85715 * 359.46556 * 9 7 6 12 12 C 1.50704 * 120.00184 * 180.29858 * 11 9 7 13 13 C 1.50705 * 109.47071 * 280.00145 * 12 11 9 14 14 H 1.07994 * 119.99773 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00050 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99853 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00169 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47075 * 89.99460 * 17 15 13 19 19 H 1.48499 * 109.46942 * 209.99874 * 17 15 13 20 20 H 1.48501 * 109.46607 * 329.99568 * 17 15 13 21 21 C 1.38206 * 119.92813 * 60.00082 * 5 2 1 22 22 H 1.09003 * 109.46557 * 300.00209 * 1 2 3 23 23 H 1.08999 * 109.46774 * 59.99612 * 1 2 3 24 24 H 1.08998 * 109.47331 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47208 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.46930 * 299.99966 * 3 2 1 27 27 H 1.08998 * 109.46984 * 60.00156 * 3 2 1 28 28 H 1.09007 * 109.47312 * 300.00525 * 4 2 1 29 29 H 1.09003 * 109.46499 * 59.99935 * 4 2 1 30 30 H 1.08992 * 109.47623 * 180.02562 * 4 2 1 31 31 H 1.07992 * 119.99766 * 0.02562 * 6 5 2 32 32 H 0.96700 * 113.99787 * 270.25131 * 8 7 6 33 33 H 0.96700 * 114.00111 * 269.72701 * 10 9 7 34 34 H 1.09002 * 109.47028 * 40.00433 * 12 11 9 35 35 H 1.09002 * 109.46803 * 160.00450 * 12 11 9 36 36 H 0.96995 * 119.99994 * 180.02562 * 16 15 13 37 37 H 1.08007 * 119.92919 * 359.97057 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 2.8278 -0.0371 2.1395 7 6 3.2859 -0.6871 3.2737 8 8 4.0636 -0.0247 4.1714 9 6 2.9530 -2.0213 3.4897 10 8 3.4047 -2.6654 4.5991 11 6 2.1559 -2.6900 2.5753 12 6 1.7880 -4.1325 2.8093 13 6 2.9367 -5.0171 2.3980 14 1 3.8427 -4.5785 2.0067 15 6 2.8310 -6.3863 2.5213 16 7 1.7278 -6.9203 2.9983 17 14 4.2551 -7.4827 2.0122 18 1 5.1549 -7.6967 3.1739 19 1 3.7301 -8.7908 1.5449 20 1 5.0122 -6.8319 0.9128 21 6 1.6975 -2.0336 1.4476 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.6766 -1.7490 -1.2492 29 1 1.6766 -0.2075 -2.1392 30 1 3.1299 -0.7218 -1.2490 31 1 3.0880 0.9968 1.9673 32 1 5.0116 -0.0850 3.9905 33 1 4.2565 -3.1069 4.4781 34 1 1.5721 -4.2854 3.8668 35 1 0.9068 -4.3831 2.2186 36 1 1.6535 -7.8835 3.0854 37 1 1.0761 -2.5562 0.7354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260163874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:43 Heat of formation + Delta-G solvation = -109.434158 kcal Electronic energy + Delta-G solvation = -18592.411042 eV Core-core repulsion = 15719.236950 eV Total energy + Delta-G solvation = -2873.174092 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.35836 -38.92597 -37.93386 -36.23595 -34.99832 -32.48556 -29.87081 -29.05750 -28.05859 -27.78997 -25.21469 -23.66598 -22.48796 -19.99678 -19.42803 -18.50043 -18.17019 -17.19017 -16.98604 -16.51480 -15.73668 -15.55913 -15.01503 -14.60546 -14.46642 -14.37993 -13.91106 -13.36049 -13.32536 -13.20680 -12.85015 -12.76685 -12.59956 -12.52105 -12.49709 -12.39423 -11.97756 -11.77563 -11.61908 -11.46866 -11.43923 -10.79072 -10.61624 -9.45731 -9.22728 -8.20649 -6.34652 0.29868 0.43666 1.39594 1.40672 1.51707 2.37690 2.67741 3.10482 3.23794 3.45389 3.72881 3.92306 4.17002 4.23276 4.35455 4.43080 4.58427 4.80089 4.83406 4.89488 4.95418 5.00977 5.08386 5.11067 5.12169 5.22544 5.27658 5.35661 5.38632 5.48597 5.48793 5.69440 5.73630 5.88450 5.91868 6.15047 6.69788 6.77550 7.05623 7.34023 8.89622 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020969 B = 0.006899 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.952209 B = 4057.445793 C = 4787.575784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.027 4.027 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.058 4.058 6 C -0.147 4.147 7 C 0.079 3.921 8 O -0.498 6.498 9 C 0.052 3.948 10 O -0.500 6.500 11 C -0.076 4.076 12 C 0.065 3.935 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.263 1.263 21 C -0.122 4.122 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.159 0.841 32 H 0.403 0.597 33 H 0.393 0.607 34 H -0.002 1.002 35 H 0.001 0.999 36 H 0.265 0.735 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.877 15.770 -7.470 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.195 4.195 5 C -0.058 4.058 6 C -0.166 4.166 7 C 0.034 3.966 8 O -0.310 6.310 9 C 0.007 3.993 10 O -0.310 6.310 11 C -0.077 4.077 12 C 0.029 3.971 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.194 4.194 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.187 1.187 21 C -0.140 4.140 22 H 0.071 0.929 23 H 0.099 0.901 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.176 0.824 32 H 0.261 0.739 33 H 0.250 0.750 34 H 0.017 0.983 35 H 0.019 0.981 36 H 0.074 0.926 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.750 15.962 -6.910 17.610 hybrid contribution 1.220 -1.648 -0.078 2.052 sum 3.970 14.313 -6.988 16.415 Atomic orbital electron populations 1.21901 0.93350 1.01778 1.02555 1.19555 0.96022 0.95833 0.91245 1.21938 1.01438 0.93447 1.02798 1.21887 1.01109 0.99915 0.96558 1.19936 0.96536 0.92720 0.96615 1.21402 1.01049 1.01542 0.92559 1.18779 0.97696 0.89486 0.90628 1.84813 1.22318 1.73241 1.50587 1.18854 1.00816 0.90831 0.88809 1.84752 1.42564 1.71217 1.32514 1.20701 0.96366 0.96855 0.93752 1.17919 0.96061 0.87786 0.95382 1.21243 1.00745 0.91378 1.42578 0.92373 1.25955 0.98688 0.99743 0.94986 1.70102 1.28473 1.12025 1.46570 0.85406 0.78808 0.77720 0.78869 1.19578 1.20815 1.18712 1.20851 1.01624 0.94844 0.96715 0.92878 0.90138 0.93632 0.91846 0.90540 0.92183 0.93746 0.90209 0.92719 0.82368 0.73895 0.75044 0.98345 0.98118 0.92629 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.29 71.98 0.60 -2.44 16 2 C -0.03 -0.61 0.85 -52.93 -0.05 -0.65 16 3 C -0.14 -2.40 7.13 71.98 0.51 -1.88 16 4 C -0.14 -3.01 8.29 71.98 0.60 -2.41 16 5 C -0.06 -1.78 4.76 -19.86 -0.09 -1.87 16 6 C -0.15 -4.36 8.91 22.35 0.20 -4.16 16 7 C 0.08 2.73 6.72 22.57 0.15 2.88 16 8 O -0.50 -14.68 13.29 -79.64 -1.06 -15.74 16 9 C 0.05 2.19 6.68 22.57 0.15 2.34 16 10 O -0.50 -21.52 12.52 -79.65 -1.00 -22.51 16 11 C -0.08 -3.48 5.09 -19.78 -0.10 -3.59 16 12 C 0.07 3.62 4.77 29.10 0.14 3.76 16 13 C -0.52 -29.42 9.09 25.60 0.23 -29.19 16 14 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 15 C 0.00 0.25 5.46 84.65 0.46 0.71 16 16 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 17 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 21 C -0.12 -4.74 8.33 22.27 0.19 -4.55 16 22 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.04 1.12 7.38 -2.39 -0.02 1.11 16 25 H 0.06 1.03 7.51 -2.38 -0.02 1.02 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.03 7.51 -2.39 -0.02 1.01 16 28 H 0.04 1.12 7.38 -2.38 -0.02 1.10 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.16 3.65 5.89 -2.91 -0.02 3.64 16 32 H 0.40 7.54 9.06 -74.06 -0.67 6.86 16 33 H 0.39 14.11 9.06 -74.06 -0.67 13.44 16 34 H 0.00 -0.11 7.85 -2.39 -0.02 -0.12 16 35 H 0.00 0.03 8.00 -2.39 -0.02 0.01 16 36 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.12 4.53 7.06 -2.91 -0.02 4.51 16 Total: -1.00 -70.52 307.77 2.98 -67.53 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.26 Total: 22.63 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 2.99 Total: -41.05 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.28 Total: -56.51 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -2.06 Total: -38.25 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -70.52 2.98 -67.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260163874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.902 kcal (2) G-P(sol) polarization free energy of solvation -70.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds