Wall clock time and date at job start Mon Mar 30 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35999 * 116.99765 * 2 1 4 4 C 1.38563 * 120.07021 * 359.97438 * 3 2 1 5 5 C 1.38242 * 119.99761 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.14765 * 0.02645 * 5 4 3 7 7 C 1.50698 * 119.92913 * 179.70138 * 6 5 4 8 8 C 1.53000 * 109.47286 * 265.00138 * 7 6 5 9 9 C 1.50698 * 109.47286 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99998 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00104 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99892 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00226 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46865 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.47060 * 119.99630 * 13 11 9 16 16 H 1.48497 * 109.47368 * 239.99772 * 13 11 9 17 17 C 1.38247 * 120.14468 * 359.97438 * 6 5 4 18 18 C 1.50702 * 120.00009 * 179.97438 * 17 6 5 19 19 C 1.38558 * 119.99917 * 359.97438 * 17 6 5 20 20 O 1.35996 * 120.07421 * 179.97438 * 19 17 6 21 21 C 1.42901 * 117.00102 * 270.02248 * 20 19 17 22 22 H 1.09004 * 109.47087 * 60.00573 * 1 2 3 23 23 H 1.09008 * 109.46996 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47596 * 299.99815 * 1 2 3 25 25 H 1.07998 * 120.00750 * 359.96234 * 4 3 2 26 26 H 1.08004 * 119.92819 * 180.02562 * 5 4 3 27 27 H 1.08998 * 109.47032 * 25.00162 * 7 6 5 28 28 H 1.09006 * 109.47162 * 144.99856 * 7 6 5 29 29 H 1.09005 * 109.46830 * 300.00247 * 8 7 6 30 30 H 1.08993 * 109.47118 * 59.99877 * 8 7 6 31 31 H 0.97004 * 119.99940 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.47017 * 89.99805 * 18 17 6 33 33 H 1.08990 * 109.47010 * 209.99934 * 18 17 6 34 34 H 1.09000 * 109.46732 * 329.99991 * 18 17 6 35 35 H 1.08997 * 109.47577 * 300.00168 * 21 20 19 36 36 H 1.09001 * 109.46895 * 60.00010 * 21 20 19 37 37 H 1.08998 * 109.46832 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2930 2.3748 -0.0005 5 6 1.9222 3.6057 0.0000 6 6 3.3027 3.6800 0.0005 7 6 3.9834 5.0244 -0.0057 8 6 4.3268 5.4156 -1.4444 9 6 5.0081 6.7598 -1.4506 10 1 5.1794 7.2826 -0.5212 11 6 5.4136 7.3217 -2.6425 12 7 5.2064 6.6843 -3.7741 13 14 6.2574 8.9882 -2.6503 14 1 6.3712 9.4918 -1.2579 15 1 7.6138 8.8535 -3.2398 16 1 5.4588 9.9437 -3.4592 17 6 4.0602 2.5235 0.0010 18 6 5.5648 2.6082 0.0010 19 6 3.4359 1.2865 0.0016 20 8 4.1795 0.1478 0.0016 21 6 4.5342 -0.3954 -1.2717 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2145 2.3197 -0.0016 26 1 1.3339 4.5115 0.0000 27 1 3.3163 5.7714 0.4245 28 1 4.8982 4.9713 0.5847 29 1 4.9940 4.6685 -1.8746 30 1 3.4121 5.4687 -2.0347 31 1 5.4914 7.0798 -4.6128 32 1 5.9275 2.6291 1.0287 33 1 5.9775 1.7398 -0.5124 34 1 5.8775 3.5169 -0.5132 35 1 3.6289 -0.6368 -1.8287 36 1 5.1192 0.3364 -1.8287 37 1 5.1254 -1.2999 -1.1288 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260187200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:31 Heat of formation + Delta-G solvation = -68.284134 kcal Electronic energy + Delta-G solvation = -18329.819055 eV Core-core repulsion = 15458.429362 eV Total energy + Delta-G solvation = -2871.389693 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35422 -38.09737 -37.19707 -33.74411 -32.17450 -31.17307 -29.06859 -27.33456 -27.18554 -25.71998 -24.70659 -21.89768 -21.18731 -19.91874 -17.75567 -16.77243 -16.64442 -16.21649 -15.83591 -14.98931 -14.65036 -14.48675 -13.92551 -13.66753 -13.51614 -13.04200 -12.56032 -12.37664 -12.02392 -11.95993 -11.67534 -11.60084 -11.47096 -11.14729 -10.94995 -10.72534 -10.57223 -10.44392 -9.82851 -9.73117 -9.49177 -9.05699 -8.35850 -8.28049 -7.60307 -6.00761 -4.03706 1.48453 1.71176 3.30391 3.35788 3.38165 3.42089 3.72717 4.23526 4.45552 4.96339 5.08188 5.12616 5.30204 5.35004 5.38908 5.47692 5.49758 5.51094 5.60693 5.69893 5.79469 5.85117 6.07030 6.16989 6.34214 6.47971 6.56933 6.66143 6.74631 6.89185 7.08804 7.14507 7.31928 7.68804 7.80741 7.89720 7.99863 8.40000 9.03766 9.60605 11.10185 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.031174 B = 0.005092 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.969953 B = 5497.103157 C = 5891.391525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.093 3.907 4 C -0.202 4.202 5 C -0.083 4.083 6 C -0.081 4.081 7 C -0.077 4.077 8 C 0.029 3.971 9 C -0.521 4.521 10 H 0.057 0.943 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.061 4.061 18 C -0.116 4.116 19 C 0.058 3.942 20 O -0.325 6.325 21 C 0.034 3.966 22 H 0.053 0.947 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.019 0.981 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.668 -12.375 6.522 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.048 3.952 4 C -0.221 4.221 5 C -0.101 4.101 6 C -0.081 4.081 7 C -0.114 4.114 8 C -0.008 4.008 9 C -0.559 4.559 10 H 0.075 0.925 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.061 4.061 18 C -0.173 4.173 19 C 0.014 3.986 20 O -0.242 6.242 21 C -0.060 4.060 22 H 0.071 0.929 23 H 0.113 0.887 24 H 0.071 0.929 25 H 0.144 0.856 26 H 0.145 0.855 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.489 -12.659 6.485 15.634 hybrid contribution -0.029 1.082 -0.461 1.176 sum -6.517 -11.578 6.024 14.588 Atomic orbital electron populations 1.23002 0.79198 1.03386 1.01200 1.86110 1.20620 1.26694 1.89182 1.19274 0.91441 0.84546 0.99962 1.21037 0.99508 0.91983 1.09566 1.20911 0.94247 0.96818 0.98155 1.20089 0.93131 0.95993 0.98927 1.20798 0.98738 0.90096 1.01752 1.19095 0.96761 0.96089 0.88849 1.21298 1.38065 1.03739 0.92812 0.92517 1.25015 0.96071 0.97603 0.95677 1.69984 1.47412 1.38288 0.97692 0.86559 0.79270 0.84223 0.78093 1.19694 1.21025 1.21052 1.19892 0.96986 0.90730 0.98503 1.20832 0.90244 1.03768 1.02429 1.17741 0.86067 0.86194 1.08582 1.86048 1.70487 1.38879 1.28775 1.22950 0.99613 0.98333 0.85152 0.92871 0.88662 0.92889 0.85600 0.85549 0.92243 0.91894 0.96224 0.96541 0.93064 0.91167 0.91936 0.89260 0.93845 0.93455 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.66 10.28 -34.24 -0.35 -5.01 16 3 C 0.09 1.54 6.70 -39.12 -0.26 1.28 16 4 C -0.20 -3.10 9.04 -39.46 -0.36 -3.46 16 5 C -0.08 -1.40 9.67 -39.57 -0.38 -1.79 16 6 C -0.08 -1.53 5.13 -104.61 -0.54 -2.06 16 7 C -0.08 -1.58 4.58 -27.88 -0.13 -1.70 16 8 C 0.03 0.74 4.76 -27.88 -0.13 0.61 16 9 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 13 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C -0.06 -1.11 5.89 -104.50 -0.62 -1.72 16 18 C -0.12 -1.97 9.00 36.01 0.32 -1.65 16 19 C 0.06 1.03 5.71 -39.12 -0.22 0.81 16 20 O -0.33 -5.46 9.41 -34.23 -0.32 -5.79 16 21 C 0.03 0.46 10.76 101.05 1.09 1.55 16 22 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 23 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 24 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 25 H 0.13 1.55 6.30 -52.49 -0.33 1.21 16 26 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 27 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 28 H 0.06 1.25 6.99 -51.93 -0.36 0.89 16 29 H 0.02 0.53 6.90 -51.93 -0.36 0.17 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.98 6.32 -51.93 -0.33 0.65 16 34 H 0.09 1.67 5.40 -51.93 -0.28 1.39 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.64 7.26 -51.93 -0.38 0.26 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 306.82 15.07 4.62 4.62 Total: -1.00 -31.56 306.82 -6.31 -37.87 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.33 Total: -2.01 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -0.65 Total: -20.13 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.67 Total: -10.80 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.56 -6.31 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260187200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.411 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds