Wall clock time and date at job start Mon Mar 30 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35999 * 116.99765 * 2 1 4 4 C 1.38563 * 120.07021 * 359.97438 * 3 2 1 5 5 C 1.38242 * 119.99761 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.14765 * 0.02645 * 5 4 3 7 7 C 1.50698 * 119.92913 * 179.70138 * 6 5 4 8 8 C 1.53000 * 109.47286 * 265.00138 * 7 6 5 9 9 C 1.50698 * 109.47286 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99998 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00104 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99892 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00226 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46865 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.47060 * 119.99630 * 13 11 9 16 16 H 1.48497 * 109.47368 * 239.99772 * 13 11 9 17 17 C 1.38247 * 120.14468 * 359.97438 * 6 5 4 18 18 C 1.50702 * 120.00009 * 179.97438 * 17 6 5 19 19 C 1.38558 * 119.99917 * 359.97438 * 17 6 5 20 20 O 1.35996 * 120.07421 * 179.97438 * 19 17 6 21 21 C 1.42901 * 117.00102 * 270.02248 * 20 19 17 22 22 H 1.09004 * 109.47087 * 60.00573 * 1 2 3 23 23 H 1.09008 * 109.46996 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47596 * 299.99815 * 1 2 3 25 25 H 1.07998 * 120.00750 * 359.96234 * 4 3 2 26 26 H 1.08004 * 119.92819 * 180.02562 * 5 4 3 27 27 H 1.08998 * 109.47032 * 25.00162 * 7 6 5 28 28 H 1.09006 * 109.47162 * 144.99856 * 7 6 5 29 29 H 1.09005 * 109.46830 * 300.00247 * 8 7 6 30 30 H 1.08993 * 109.47118 * 59.99877 * 8 7 6 31 31 H 0.97004 * 119.99940 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.47017 * 89.99805 * 18 17 6 33 33 H 1.08990 * 109.47010 * 209.99934 * 18 17 6 34 34 H 1.09000 * 109.46732 * 329.99991 * 18 17 6 35 35 H 1.08997 * 109.47577 * 300.00168 * 21 20 19 36 36 H 1.09001 * 109.46895 * 60.00010 * 21 20 19 37 37 H 1.08998 * 109.46832 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2930 2.3748 -0.0005 5 6 1.9222 3.6057 0.0000 6 6 3.3027 3.6800 0.0005 7 6 3.9834 5.0244 -0.0057 8 6 4.3268 5.4156 -1.4444 9 6 5.0081 6.7598 -1.4506 10 1 5.1794 7.2826 -0.5212 11 6 5.4136 7.3217 -2.6425 12 7 5.2064 6.6843 -3.7741 13 14 6.2574 8.9882 -2.6503 14 1 6.3712 9.4918 -1.2579 15 1 7.6138 8.8535 -3.2398 16 1 5.4588 9.9437 -3.4592 17 6 4.0602 2.5235 0.0010 18 6 5.5648 2.6082 0.0010 19 6 3.4359 1.2865 0.0016 20 8 4.1795 0.1478 0.0016 21 6 4.5342 -0.3954 -1.2717 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2145 2.3197 -0.0016 26 1 1.3339 4.5115 0.0000 27 1 3.3163 5.7714 0.4245 28 1 4.8982 4.9713 0.5847 29 1 4.9940 4.6685 -1.8746 30 1 3.4121 5.4687 -2.0347 31 1 5.4914 7.0798 -4.6128 32 1 5.9275 2.6291 1.0287 33 1 5.9775 1.7398 -0.5124 34 1 5.8775 3.5169 -0.5132 35 1 3.6289 -0.6368 -1.8287 36 1 5.1192 0.3364 -1.8287 37 1 5.1254 -1.2999 -1.1288 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260187200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:31 Heat of formation + Delta-G solvation = -86.416550 kcal Electronic energy + Delta-G solvation = -18330.605336 eV Core-core repulsion = 15458.429362 eV Total energy + Delta-G solvation = -2872.175974 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.59411 -39.25273 -38.52117 -35.62423 -33.80695 -32.69462 -30.49375 -28.72526 -28.22566 -26.90193 -26.48742 -23.56357 -22.58977 -21.38313 -18.94357 -18.53692 -17.96885 -17.76531 -16.95920 -16.50187 -16.06796 -15.75991 -15.35822 -15.08270 -14.68625 -14.49173 -14.14607 -14.06475 -13.49483 -13.21258 -13.11289 -12.87231 -12.83577 -12.67298 -12.62340 -12.28146 -11.98116 -11.91735 -11.62933 -11.33631 -11.18497 -10.84859 -10.53439 -9.58293 -8.93602 -8.17342 -6.28773 0.19297 0.38868 1.41548 1.42175 1.55301 2.31632 2.41034 2.48365 2.97598 3.15809 3.83521 3.94029 4.14646 4.25913 4.30805 4.38230 4.40699 4.44692 4.48563 4.53330 4.71373 4.73355 4.76705 4.79384 4.82717 4.93172 5.12069 5.20207 5.25754 5.38126 5.53874 5.59398 5.71467 5.86685 5.88835 6.18623 6.26171 6.67332 6.88567 7.40605 8.94111 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.031174 B = 0.005092 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.969953 B = 5497.103157 C = 5891.391525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.093 3.907 4 C -0.195 4.195 5 C -0.087 4.087 6 C -0.107 4.107 7 C -0.061 4.061 8 C 0.039 3.961 9 C -0.539 4.539 10 H 0.063 0.937 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.963 3.037 14 H -0.260 1.260 15 H -0.280 1.280 16 H -0.279 1.279 17 C -0.075 4.075 18 C -0.111 4.111 19 C 0.043 3.957 20 O -0.337 6.337 21 C 0.031 3.969 22 H 0.062 0.938 23 H 0.121 0.879 24 H 0.066 0.934 25 H 0.161 0.839 26 H 0.140 0.860 27 H 0.066 0.934 28 H 0.065 0.935 29 H -0.005 1.005 30 H -0.013 1.013 31 H 0.262 0.738 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.040 0.960 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.533 -12.677 7.352 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.048 3.952 4 C -0.214 4.214 5 C -0.105 4.105 6 C -0.108 4.108 7 C -0.098 4.098 8 C 0.002 3.998 9 C -0.577 4.577 10 H 0.081 0.919 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.788 3.212 14 H -0.184 1.184 15 H -0.205 1.205 16 H -0.205 1.205 17 C -0.075 4.075 18 C -0.167 4.167 19 C -0.001 4.001 20 O -0.254 6.254 21 C -0.063 4.063 22 H 0.081 0.919 23 H 0.139 0.861 24 H 0.085 0.915 25 H 0.178 0.822 26 H 0.158 0.842 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.013 0.987 30 H 0.006 0.994 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.365 -12.971 7.329 16.620 hybrid contribution 0.157 1.034 -0.734 1.278 sum -7.208 -11.937 6.595 15.426 Atomic orbital electron populations 1.23377 0.76556 1.05605 1.02278 1.86100 1.23328 1.25842 1.88776 1.19408 0.91330 0.85623 0.98883 1.21332 1.01151 0.90816 1.08058 1.21130 0.93609 0.98216 0.97592 1.19982 0.94184 0.95038 1.01554 1.20507 0.99266 0.91662 0.98351 1.18911 0.94563 0.94841 0.91533 1.21734 1.38092 1.04718 0.93193 0.91916 1.25944 0.96739 1.01721 0.95232 1.70118 1.48614 1.40277 0.98422 0.85429 0.78017 0.79154 0.78631 1.18432 1.20528 1.20513 1.20019 0.97403 0.91128 0.98991 1.20765 0.90096 1.02819 1.03065 1.17886 0.87009 0.86216 1.09030 1.86013 1.70537 1.38499 1.30357 1.23136 0.99959 0.99146 0.84094 0.91927 0.86077 0.91539 0.82203 0.84211 0.91574 0.91661 0.98713 0.99431 0.92874 0.89750 0.91109 0.91695 0.93790 0.94089 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -9.04 10.28 -79.68 -0.82 -9.86 16 3 C 0.09 2.95 6.70 22.57 0.15 3.10 16 4 C -0.20 -5.60 9.04 22.35 0.20 -5.39 16 5 C -0.09 -2.88 9.67 22.27 0.22 -2.66 16 6 C -0.11 -4.07 5.13 -19.86 -0.10 -4.17 16 7 C -0.06 -2.54 4.58 29.85 0.14 -2.41 16 8 C 0.04 2.04 4.76 29.85 0.14 2.18 16 9 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 10 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 11 C 0.00 0.07 5.46 84.65 0.46 0.53 16 12 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 13 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 14 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 C -0.07 -2.76 5.89 -19.79 -0.12 -2.88 16 18 C -0.11 -3.85 9.00 71.24 0.64 -3.21 16 19 C 0.04 1.50 5.71 22.57 0.13 1.62 16 20 O -0.34 -11.08 9.41 -79.63 -0.75 -11.83 16 21 C 0.03 0.80 10.76 113.37 1.22 2.02 16 22 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 23 H 0.12 1.41 8.14 -2.38 -0.02 1.40 16 24 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 25 H 0.16 3.38 6.30 -2.91 -0.02 3.36 16 26 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 27 H 0.07 2.63 8.05 -2.39 -0.02 2.61 16 28 H 0.06 2.65 6.99 -2.38 -0.02 2.64 16 29 H -0.01 -0.31 6.90 -2.38 -0.02 -0.33 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 31 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.07 2.26 6.32 -2.39 -0.02 2.24 16 34 H 0.06 2.54 5.40 -2.39 -0.01 2.53 16 35 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 36 H 0.04 1.10 7.26 -2.39 -0.02 1.09 16 37 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -68.46 306.82 6.22 -62.24 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.05 Total: 10.11 kcal Atomic # 6 Polarization: -44.54 SS G_CDS: 4.43 Total: -40.11 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.28 Total: -56.65 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -1.57 Total: -21.69 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.46 6.22 -62.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260187200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.176 kcal (2) G-P(sol) polarization free energy of solvation -68.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds