Wall clock time and date at job start Mon Mar 30 2020 05:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35994 * 117.00010 * 2 1 4 4 C 1.38565 * 120.07354 * 93.37276 * 3 2 1 5 5 C 1.50698 * 120.00179 * 359.95702 * 4 3 2 6 6 C 1.38246 * 119.99993 * 179.97438 * 4 3 2 7 7 C 1.38250 * 120.14536 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.92401 * 179.97438 * 7 6 4 9 9 C 1.50700 * 109.47160 * 265.00029 * 8 7 6 10 10 H 1.08001 * 120.00000 * 359.97438 * 9 8 7 11 11 C 1.37886 * 120.00059 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99614 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99863 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46868 * 60.00323 * 13 11 9 15 15 H 1.48500 * 109.46861 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47533 * 299.99897 * 13 11 9 17 17 C 1.38246 * 120.14823 * 0.23127 * 7 6 4 18 18 C 1.50696 * 120.00162 * 179.74309 * 17 7 6 19 19 C 1.38566 * 119.99654 * 359.49318 * 17 7 6 20 20 O 1.35993 * 120.07193 * 180.25310 * 19 17 7 21 21 C 1.42910 * 117.00004 * 92.95385 * 20 19 17 22 22 H 1.08997 * 109.47192 * 177.22400 * 1 2 3 23 23 H 1.09000 * 109.47140 * 297.22708 * 1 2 3 24 24 H 1.09001 * 109.47113 * 57.21988 * 1 2 3 25 25 H 1.09005 * 109.46925 * 270.02483 * 5 4 3 26 26 H 1.09000 * 109.47101 * 30.01875 * 5 4 3 27 27 H 1.08995 * 109.47577 * 150.02023 * 5 4 3 28 28 H 1.07996 * 119.92355 * 179.97438 * 6 4 3 29 29 H 1.09007 * 109.46719 * 145.00345 * 8 7 6 30 30 H 1.08995 * 109.47511 * 24.99997 * 8 7 6 31 31 H 0.96997 * 119.99606 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.47058 * 89.99993 * 18 17 7 33 33 H 1.09000 * 109.47289 * 210.00104 * 18 17 7 34 34 H 1.09005 * 109.46944 * 330.00389 * 18 17 7 35 35 H 1.09003 * 109.46882 * 64.20623 * 21 20 19 36 36 H 1.08995 * 109.47058 * 184.21294 * 21 20 19 37 37 H 1.09000 * 109.46765 * 304.21169 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.4245 1.7984 1.1970 5 6 2.1508 1.0941 2.5009 6 6 3.0525 3.0300 1.1952 7 6 3.3043 3.6792 0.0009 8 6 3.9887 5.0218 0.0048 9 6 2.9515 6.1144 -0.0343 10 1 1.9017 5.8618 -0.0598 11 6 3.3428 7.4366 -0.0385 12 7 4.6211 7.7440 -0.0089 13 14 2.0571 8.7908 -0.0876 14 1 1.1768 8.6810 1.1032 15 1 2.7315 10.1139 -0.0837 16 1 1.2411 8.6544 -1.3207 17 6 2.9249 3.1018 -1.1966 18 6 3.1958 3.8151 -2.4962 19 6 2.3002 1.8650 -1.2022 20 8 1.9310 1.2934 -2.3796 21 6 2.8641 0.3970 -2.9864 22 1 -0.3633 -1.0264 -0.0498 23 1 -0.3633 0.4702 0.9138 24 1 -0.3633 0.5564 -0.8640 25 1 1.1708 1.3903 2.8751 26 1 2.1683 0.0159 2.3421 27 1 2.9152 1.3666 3.2286 28 1 3.3463 3.4862 2.1289 29 1 4.6348 5.1027 -0.8694 30 1 4.5877 5.1217 0.9099 31 1 4.8963 8.6741 -0.0115 32 1 4.1750 3.5214 -2.8745 33 1 2.4298 3.5475 -3.2240 34 1 3.1787 4.8922 -2.3299 35 1 3.0077 -0.4696 -2.3410 36 1 2.4790 0.0708 -3.9524 37 1 3.8173 0.9062 -3.1283 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260207654.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:34 Heat of formation + Delta-G solvation = -68.767274 kcal Electronic energy + Delta-G solvation = -18730.413190 eV Core-core repulsion = 15859.002546 eV Total energy + Delta-G solvation = -2871.410644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.13808 -37.55630 -37.06653 -33.65472 -32.45279 -30.35414 -28.86116 -27.53141 -27.07347 -25.78961 -24.24322 -23.00207 -21.16111 -19.62854 -17.16357 -16.48301 -16.39043 -16.29331 -15.57761 -14.80855 -14.58327 -14.27796 -13.66846 -13.31514 -13.21080 -12.74483 -12.73598 -12.28206 -12.14797 -11.85184 -11.68191 -11.61236 -11.33172 -11.09427 -10.86403 -10.67723 -10.60608 -10.35463 -10.14868 -9.68348 -9.41465 -9.13729 -8.44952 -7.90960 -7.61886 -6.07361 -4.11368 1.66111 1.78825 3.30322 3.34600 3.37787 3.75997 4.09841 4.38612 4.52089 5.21905 5.27748 5.43114 5.45026 5.50754 5.53372 5.54868 5.69786 5.74185 5.77574 5.82641 5.84788 5.96156 6.06445 6.17396 6.33209 6.33494 6.53985 6.85557 6.88101 6.99750 7.17226 7.27965 7.52573 7.55946 7.77751 7.88529 8.11295 8.27916 8.93583 9.52483 11.02169 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024567 B = 0.006537 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.461266 B = 4282.602498 C = 4738.016435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.333 6.333 3 C 0.046 3.954 4 C -0.101 4.101 5 C -0.104 4.104 6 C -0.115 4.115 7 C -0.024 4.024 8 C 0.050 3.950 9 C -0.511 4.511 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.094 4.094 18 C -0.112 4.112 19 C 0.072 3.928 20 O -0.333 6.333 21 C 0.041 3.959 22 H 0.085 0.915 23 H 0.040 0.960 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.125 0.875 29 H 0.035 0.965 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 -13.449 -1.017 14.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.250 6.250 3 C 0.002 3.998 4 C -0.101 4.101 5 C -0.161 4.161 6 C -0.133 4.133 7 C -0.024 4.024 8 C 0.013 3.987 9 C -0.549 4.549 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.095 4.095 18 C -0.168 4.168 19 C 0.029 3.971 20 O -0.250 6.250 21 C -0.054 4.054 22 H 0.103 0.897 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.143 0.857 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.375 -13.450 -1.120 14.188 hybrid contribution -0.671 0.890 0.063 1.116 sum -5.046 -12.561 -1.058 13.577 Atomic orbital electron populations 1.22892 0.79949 1.02149 1.00564 1.85928 1.19318 1.25343 1.94398 1.18615 1.02196 0.87382 0.91597 1.19973 1.00791 0.95204 0.94169 1.20608 1.01515 1.00178 0.93807 1.20938 1.00239 0.93505 0.98630 1.20555 0.94237 0.96907 0.90736 1.18372 0.95392 0.86344 0.98609 1.20969 0.92720 0.89998 1.51217 0.92514 1.24988 0.95311 0.98702 0.95122 1.69941 1.14466 1.18531 1.50216 0.86620 0.81549 0.80897 0.78796 1.20185 1.21213 1.20114 1.19986 0.98713 0.93933 0.96829 1.20727 1.00286 1.02621 0.93156 1.18836 1.01270 0.92609 0.84414 1.85925 1.42903 1.61369 1.34800 1.22880 0.92864 0.92266 0.97358 0.89689 0.94121 0.93466 0.91881 0.91490 0.91617 0.85656 0.94734 0.95266 0.92739 0.92444 0.92259 0.88689 0.93660 0.89601 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 11.13 101.05 1.12 1.64 16 2 O -0.33 -5.47 9.25 -34.22 -0.32 -5.79 16 3 C 0.05 0.83 5.71 -39.12 -0.22 0.61 16 4 C -0.10 -1.79 5.89 -104.50 -0.62 -2.41 16 5 C -0.10 -1.47 9.79 36.00 0.35 -1.11 16 6 C -0.12 -2.27 9.33 -39.57 -0.37 -2.64 16 7 C -0.02 -0.53 5.07 -104.62 -0.53 -1.06 16 8 C 0.05 1.24 4.42 -29.04 -0.13 1.11 16 9 C -0.51 -13.93 8.29 -34.44 -0.29 -14.22 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 13 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.09 -1.94 5.89 -104.50 -0.62 -2.55 16 18 C -0.11 -2.15 8.99 36.00 0.32 -1.83 16 19 C 0.07 1.39 5.71 -39.12 -0.22 1.16 16 20 O -0.33 -5.85 9.25 -34.22 -0.32 -6.16 16 21 C 0.04 0.56 11.13 101.05 1.13 1.68 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.89 7.53 -51.93 -0.39 0.50 16 27 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 28 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 29 H 0.03 0.90 7.00 -51.92 -0.36 0.54 16 30 H 0.03 0.77 8.05 -51.93 -0.42 0.35 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.06 7.54 -51.93 -0.39 0.67 16 34 H 0.09 2.06 6.14 -51.93 -0.32 1.74 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -29.83 313.03 -6.01 -35.84 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.65 Total: -1.79 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -0.16 Total: -18.03 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.74 Total: -25.03 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.63 Total: -11.95 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.83 -6.01 -35.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207654.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.925 kcal (2) G-P(sol) polarization free energy of solvation -29.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds