Wall clock time and date at job start Mon Mar 30 2020 05:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35994 * 117.00010 * 2 1 4 4 C 1.38565 * 120.07354 * 93.37276 * 3 2 1 5 5 C 1.50698 * 120.00179 * 359.95702 * 4 3 2 6 6 C 1.38246 * 119.99993 * 179.97438 * 4 3 2 7 7 C 1.38250 * 120.14536 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.92401 * 179.97438 * 7 6 4 9 9 C 1.50700 * 109.47160 * 265.00029 * 8 7 6 10 10 H 1.08001 * 120.00000 * 359.97438 * 9 8 7 11 11 C 1.37886 * 120.00059 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99614 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99863 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46868 * 60.00323 * 13 11 9 15 15 H 1.48500 * 109.46861 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47533 * 299.99897 * 13 11 9 17 17 C 1.38246 * 120.14823 * 0.23127 * 7 6 4 18 18 C 1.50696 * 120.00162 * 179.74309 * 17 7 6 19 19 C 1.38566 * 119.99654 * 359.49318 * 17 7 6 20 20 O 1.35993 * 120.07193 * 180.25310 * 19 17 7 21 21 C 1.42910 * 117.00004 * 92.95385 * 20 19 17 22 22 H 1.08997 * 109.47192 * 177.22400 * 1 2 3 23 23 H 1.09000 * 109.47140 * 297.22708 * 1 2 3 24 24 H 1.09001 * 109.47113 * 57.21988 * 1 2 3 25 25 H 1.09005 * 109.46925 * 270.02483 * 5 4 3 26 26 H 1.09000 * 109.47101 * 30.01875 * 5 4 3 27 27 H 1.08995 * 109.47577 * 150.02023 * 5 4 3 28 28 H 1.07996 * 119.92355 * 179.97438 * 6 4 3 29 29 H 1.09007 * 109.46719 * 145.00345 * 8 7 6 30 30 H 1.08995 * 109.47511 * 24.99997 * 8 7 6 31 31 H 0.96997 * 119.99606 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.47058 * 89.99993 * 18 17 7 33 33 H 1.09000 * 109.47289 * 210.00104 * 18 17 7 34 34 H 1.09005 * 109.46944 * 330.00389 * 18 17 7 35 35 H 1.09003 * 109.46882 * 64.20623 * 21 20 19 36 36 H 1.08995 * 109.47058 * 184.21294 * 21 20 19 37 37 H 1.09000 * 109.46765 * 304.21169 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.4245 1.7984 1.1970 5 6 2.1508 1.0941 2.5009 6 6 3.0525 3.0300 1.1952 7 6 3.3043 3.6792 0.0009 8 6 3.9887 5.0218 0.0048 9 6 2.9515 6.1144 -0.0343 10 1 1.9017 5.8618 -0.0598 11 6 3.3428 7.4366 -0.0385 12 7 4.6211 7.7440 -0.0089 13 14 2.0571 8.7908 -0.0876 14 1 1.1768 8.6810 1.1032 15 1 2.7315 10.1139 -0.0837 16 1 1.2411 8.6544 -1.3207 17 6 2.9249 3.1018 -1.1966 18 6 3.1958 3.8151 -2.4962 19 6 2.3002 1.8650 -1.2022 20 8 1.9310 1.2934 -2.3796 21 6 2.8641 0.3970 -2.9864 22 1 -0.3633 -1.0264 -0.0498 23 1 -0.3633 0.4702 0.9138 24 1 -0.3633 0.5564 -0.8640 25 1 1.1708 1.3903 2.8751 26 1 2.1683 0.0159 2.3421 27 1 2.9152 1.3666 3.2286 28 1 3.3463 3.4862 2.1289 29 1 4.6348 5.1027 -0.8694 30 1 4.5877 5.1217 0.9099 31 1 4.8963 8.6741 -0.0115 32 1 4.1750 3.5214 -2.8745 33 1 2.4298 3.5475 -3.2240 34 1 3.1787 4.8922 -2.3299 35 1 3.0077 -0.4696 -2.3410 36 1 2.4790 0.0708 -3.9524 37 1 3.8173 0.9062 -3.1283 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260207654.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:34 Heat of formation + Delta-G solvation = -85.062108 kcal Electronic energy + Delta-G solvation = -18731.119787 eV Core-core repulsion = 15859.002546 eV Total energy + Delta-G solvation = -2872.117241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55171 -38.85331 -38.52037 -35.43556 -34.15695 -32.01977 -30.22381 -29.12873 -28.25047 -27.12979 -25.77549 -24.77988 -22.65545 -21.14832 -18.55128 -18.44118 -17.86669 -17.76303 -16.85799 -16.55228 -15.98288 -15.48758 -15.07303 -14.76538 -14.68540 -14.23916 -14.06523 -13.96034 -13.69871 -13.36789 -13.00098 -12.98406 -12.78276 -12.69719 -12.55062 -12.35291 -12.10646 -12.07763 -11.63311 -11.45390 -11.23585 -10.58404 -10.48869 -9.38197 -9.17988 -8.18678 -6.30847 0.19157 0.30730 1.40347 1.41880 1.50150 2.30678 2.45369 2.78848 3.08922 3.12499 3.87941 4.07769 4.27576 4.31542 4.42715 4.47897 4.49749 4.51352 4.54786 4.60576 4.73886 4.76800 4.79807 4.81088 4.85266 4.92474 5.16623 5.21750 5.31169 5.38692 5.48432 5.54031 5.74916 5.77159 5.96070 6.18849 6.28163 6.75454 6.80229 7.36847 8.90085 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024567 B = 0.006537 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.461266 B = 4282.602498 C = 4738.016435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.337 6.337 3 C 0.050 3.950 4 C -0.097 4.097 5 C -0.101 4.101 6 C -0.124 4.124 7 C -0.051 4.051 8 C 0.062 3.938 9 C -0.521 4.521 10 H 0.050 0.950 11 C 0.011 3.989 12 N -0.927 5.927 13 Si 0.958 3.042 14 H -0.269 1.269 15 H -0.280 1.280 16 H -0.270 1.270 17 C -0.111 4.111 18 C -0.102 4.102 19 C 0.072 3.928 20 O -0.344 6.344 21 C 0.036 3.964 22 H 0.119 0.881 23 H 0.049 0.951 24 H 0.037 0.963 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.014 0.986 30 H 0.006 0.994 31 H 0.265 0.735 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.117 0.883 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 -15.050 -0.871 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.255 6.255 3 C 0.006 3.994 4 C -0.098 4.098 5 C -0.157 4.157 6 C -0.142 4.142 7 C -0.051 4.051 8 C 0.025 3.975 9 C -0.559 4.559 10 H 0.068 0.932 11 C -0.188 4.188 12 N -0.566 5.566 13 Si 0.782 3.218 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.195 1.195 17 C -0.112 4.112 18 C -0.159 4.159 19 C 0.028 3.972 20 O -0.261 6.261 21 C -0.058 4.058 22 H 0.137 0.863 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.146 0.854 29 H 0.032 0.968 30 H 0.024 0.976 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.061 -15.069 -0.976 16.271 hybrid contribution -0.178 1.230 -0.020 1.243 sum -6.239 -13.838 -0.996 15.213 Atomic orbital electron populations 1.23135 0.77843 1.04379 1.00602 1.85907 1.21150 1.24031 1.94367 1.18729 1.01666 0.87680 0.91355 1.20290 0.99255 0.94333 0.95910 1.20676 1.02749 1.00331 0.91973 1.21001 1.00762 0.94505 0.97927 1.20302 0.96266 0.96083 0.92476 1.18074 0.94704 0.88344 0.96334 1.21212 0.92794 0.91044 1.50888 0.93158 1.25806 0.97262 1.01048 0.94678 1.70055 1.16307 1.19113 1.51165 0.85609 0.79071 0.78015 0.79062 1.19446 1.20526 1.19473 1.20062 0.99647 0.94961 0.96534 1.20602 1.01438 1.00471 0.93345 1.18869 1.00498 0.92234 0.85582 1.85894 1.43982 1.61954 1.34253 1.23131 0.92578 0.91534 0.98539 0.86313 0.93222 0.94420 0.90349 0.90379 0.90337 0.85372 0.96828 0.97593 0.92566 0.91255 0.90980 0.91788 0.93332 0.86447 0.93839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.13 113.37 1.26 2.05 16 2 O -0.34 -10.14 9.25 -79.62 -0.74 -10.87 16 3 C 0.05 1.73 5.71 22.57 0.13 1.86 16 4 C -0.10 -3.32 5.89 -19.79 -0.12 -3.43 16 5 C -0.10 -2.55 9.79 71.24 0.70 -1.85 16 6 C -0.12 -4.91 9.33 22.27 0.21 -4.70 16 7 C -0.05 -2.30 5.07 -19.86 -0.10 -2.40 16 8 C 0.06 3.28 4.42 29.10 0.13 3.41 16 9 C -0.52 -29.33 8.29 25.60 0.21 -29.12 16 10 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 11 C 0.01 0.60 5.46 84.66 0.46 1.06 16 12 N -0.93 -54.88 13.29 21.45 0.28 -54.60 16 13 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 C -0.11 -4.64 5.89 -19.79 -0.12 -4.76 16 18 C -0.10 -4.02 8.99 71.23 0.64 -3.38 16 19 C 0.07 2.70 5.71 22.57 0.13 2.83 16 20 O -0.34 -11.48 9.25 -79.61 -0.74 -12.22 16 21 C 0.04 0.90 11.13 113.37 1.26 2.16 16 22 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.08 1.82 7.53 -2.39 -0.02 1.80 16 27 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 28 H 0.13 4.86 8.06 -2.91 -0.02 4.83 16 29 H 0.01 0.75 7.00 -2.38 -0.02 0.73 16 30 H 0.01 0.32 8.05 -2.39 -0.02 0.30 16 31 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.07 2.57 7.54 -2.39 -0.02 2.56 16 34 H 0.06 2.90 6.14 -2.38 -0.01 2.89 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -64.81 313.03 6.68 -58.13 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 1.04 Total: 9.84 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 4.80 Total: -36.28 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.28 Total: -54.60 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.47 Total: -23.09 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -64.81 6.68 -58.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207654.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.931 kcal (2) G-P(sol) polarization free energy of solvation -64.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds