Wall clock time and date at job start Mon Mar 30 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99954 * 2 1 4 4 C 1.50699 * 109.47364 * 179.97438 * 3 2 1 5 5 C 1.38163 * 120.03046 * 89.99587 * 4 3 2 6 6 C 1.50703 * 119.97108 * 0.02562 * 5 4 3 7 7 C 1.53000 * 109.46912 * 84.72843 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99776 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00001 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00114 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99955 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46999 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46979 * 120.00420 * 12 10 8 15 15 H 1.48498 * 109.46942 * 240.00334 * 12 10 8 16 16 C 1.38246 * 120.05822 * 179.73138 * 5 4 3 17 17 C 1.38283 * 120.11132 * 0.28901 * 16 5 4 18 18 C 1.38126 * 120.05677 * 359.96558 * 17 16 5 19 19 C 1.38716 * 120.03059 * 270.24990 * 4 3 2 20 20 O 1.35899 * 120.05124 * 0.02562 * 19 4 3 21 21 C 1.42899 * 116.99959 * 180.23060 * 20 19 4 22 22 H 1.09000 * 109.46536 * 60.00680 * 1 2 3 23 23 H 1.09002 * 109.46867 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46869 * 300.00045 * 1 2 3 25 25 H 1.08999 * 109.47859 * 59.99665 * 3 2 1 26 26 H 1.09002 * 109.47300 * 299.99298 * 3 2 1 27 27 H 1.09002 * 109.47152 * 324.72615 * 6 5 4 28 28 H 1.09001 * 109.46980 * 204.72715 * 6 5 4 29 29 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 30 30 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 31 31 H 0.97000 * 120.00354 * 180.02562 * 11 10 8 32 32 H 1.08000 * 119.94391 * 180.27977 * 16 5 4 33 33 H 1.08005 * 119.97513 * 179.97438 * 17 16 5 34 34 H 1.08004 * 120.03129 * 180.02562 * 18 17 16 35 35 H 1.09007 * 109.47389 * 180.02562 * 21 20 19 36 36 H 1.09004 * 109.47496 * 300.00312 * 21 20 19 37 37 H 1.09000 * 109.47269 * 60.00334 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2023 1.1316 -1.1952 6 6 3.4518 1.1913 -2.5007 7 6 3.1972 2.6525 -2.8762 8 6 2.4472 2.7122 -4.1820 9 1 2.1786 1.7993 -4.6927 10 6 2.1031 3.9323 -4.7242 11 7 2.4297 5.0440 -4.1021 12 14 1.1740 4.0064 -6.3431 13 1 0.9289 2.6274 -6.8366 14 1 -0.1248 4.6963 -6.1373 15 1 1.9791 4.7543 -7.3420 16 6 5.5809 1.0281 -1.1953 17 6 6.2726 0.9732 0.0008 18 6 5.5873 1.0224 1.1991 19 6 4.2037 1.1267 1.2019 20 8 3.5271 1.1747 2.3795 21 6 4.3041 1.1134 3.5771 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.6886 1.8464 0.8899 26 1 1.6887 1.8463 -0.8901 27 1 2.4992 0.6717 -2.3963 28 1 4.0428 0.7131 -3.2818 29 1 2.6062 3.1308 -2.0951 30 1 4.1497 3.1721 -2.9806 31 1 2.1873 5.9024 -4.4833 32 1 6.1186 0.9899 -2.1312 33 1 7.3495 0.8920 -0.0018 34 1 6.1279 0.9799 2.1331 35 1 3.6427 1.1606 4.4423 36 1 4.8645 0.1786 3.5992 37 1 4.9980 1.9536 3.6036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260237074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:35 Heat of formation + Delta-G solvation = -73.189424 kcal Electronic energy + Delta-G solvation = -18373.955655 eV Core-core repulsion = 15502.353252 eV Total energy + Delta-G solvation = -2871.602403 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.09413 -37.77457 -36.92988 -33.94567 -32.20813 -31.03035 -28.74420 -27.47362 -26.73230 -25.21675 -24.57692 -21.76816 -21.25302 -19.86658 -17.37937 -16.40343 -16.27559 -16.00489 -15.76892 -15.43807 -14.93866 -14.47088 -14.28622 -13.75875 -13.48062 -12.68060 -12.47419 -12.38308 -12.15134 -11.84632 -11.75992 -11.33870 -11.16563 -11.04784 -10.94641 -10.73159 -10.54924 -10.30785 -9.83079 -9.59072 -9.24782 -9.03055 -8.34869 -8.20826 -7.82719 -5.99713 -4.02572 1.63460 1.81842 3.31280 3.38938 3.43154 3.44500 3.93599 4.45788 4.51841 4.98737 5.11463 5.16105 5.20586 5.35955 5.43069 5.45381 5.55587 5.62268 5.67798 5.77859 5.81201 5.92847 6.05664 6.09565 6.28133 6.44195 6.64065 6.71921 6.78772 6.97894 7.10966 7.21253 7.53906 7.64988 7.69461 7.81421 8.00498 8.40831 9.04574 9.61537 11.11308 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023289 B = 0.005954 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.971604 B = 4701.668628 C = 5334.657843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.106 3.894 4 C -0.121 4.121 5 C 0.000 4.000 6 C -0.085 4.085 7 C 0.030 3.970 8 C -0.520 4.520 9 H 0.057 0.943 10 C 0.057 3.943 11 N -0.894 5.894 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.161 4.161 17 C -0.075 4.075 18 C -0.230 4.230 19 C 0.143 3.857 20 O -0.314 6.314 21 C 0.029 3.971 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.036 0.964 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.260 0.740 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.107 -8.183 12.665 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.031 3.969 4 C -0.122 4.122 5 C -0.001 4.001 6 C -0.122 4.122 7 C -0.007 4.007 8 C -0.558 4.558 9 H 0.075 0.925 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.179 4.179 17 C -0.094 4.094 18 C -0.249 4.249 19 C 0.098 3.902 20 O -0.228 6.228 21 C -0.066 4.066 22 H 0.063 0.937 23 H 0.098 0.902 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.993 -8.141 12.692 15.373 hybrid contribution -0.325 0.455 -0.652 0.859 sum 2.668 -7.686 12.040 14.531 Atomic orbital electron populations 1.22687 0.81683 1.02050 1.00054 1.87901 1.19064 1.28097 1.95452 1.21258 0.89262 0.84785 1.01640 1.18767 0.94522 1.08831 0.90090 1.20111 0.93649 0.91172 0.95122 1.20932 0.98636 1.01893 0.90746 1.19101 0.97109 0.88237 0.96265 1.21283 1.35934 0.92326 1.06287 0.92472 1.25016 0.96091 0.95788 0.97473 1.69980 1.46954 0.97402 1.39016 0.86554 0.79610 0.78112 0.83849 1.19676 1.21042 1.21018 1.20993 0.93765 1.05082 0.98035 1.20868 0.99266 0.97286 0.91941 1.21011 0.92749 1.12073 0.99081 1.18795 0.90385 0.95833 0.85210 1.86079 1.35768 1.88451 1.12464 1.22987 0.96967 1.01057 0.85593 0.93686 0.90203 0.94564 0.92885 0.90446 0.91394 0.91859 0.96311 0.96323 0.93044 0.85804 0.86224 0.86029 0.88671 0.92938 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.39 -7.08 10.68 -35.23 -0.38 -7.45 16 3 C 0.11 2.01 5.04 36.01 0.18 2.19 16 4 C -0.12 -2.34 5.52 -104.47 -0.58 -2.92 16 5 C 0.00 -0.01 5.13 -104.64 -0.54 -0.54 16 6 C -0.08 -1.83 4.58 -27.88 -0.13 -1.96 16 7 C 0.03 0.77 4.76 -27.88 -0.13 0.64 16 8 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 9 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 12 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 C -0.16 -2.79 9.68 -39.56 -0.38 -3.17 16 17 C -0.08 -1.13 10.04 -39.61 -0.40 -1.53 16 18 C -0.23 -3.45 9.04 -39.43 -0.36 -3.80 16 19 C 0.14 2.46 6.66 -39.22 -0.26 2.20 16 20 O -0.31 -4.91 9.55 -19.42 -0.19 -5.09 16 21 C 0.03 0.30 9.81 101.05 0.99 1.30 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.95 7.54 -51.93 -0.39 0.56 16 26 H 0.08 1.59 5.41 -51.93 -0.28 1.31 16 27 H 0.07 1.47 7.00 -51.93 -0.36 1.11 16 28 H 0.06 1.31 8.05 -51.93 -0.42 0.89 16 29 H 0.02 0.51 6.88 -51.93 -0.36 0.16 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.12 1.44 6.30 -52.48 -0.33 1.11 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 37 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -31.97 309.60 -6.52 -38.48 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.44 Total: -1.61 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -0.90 Total: -19.43 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.56 Total: -12.55 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.97 -6.52 -38.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260237074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.706 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds