Wall clock time and date at job start Mon Mar 30 2020 06:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99954 * 2 1 4 4 C 1.50699 * 109.47364 * 179.97438 * 3 2 1 5 5 C 1.38163 * 120.03046 * 89.99587 * 4 3 2 6 6 C 1.50703 * 119.97108 * 0.02562 * 5 4 3 7 7 C 1.53000 * 109.46912 * 84.72843 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99776 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00001 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00114 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99955 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46999 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46979 * 120.00420 * 12 10 8 15 15 H 1.48498 * 109.46942 * 240.00334 * 12 10 8 16 16 C 1.38246 * 120.05822 * 179.73138 * 5 4 3 17 17 C 1.38283 * 120.11132 * 0.28901 * 16 5 4 18 18 C 1.38126 * 120.05677 * 359.96558 * 17 16 5 19 19 C 1.38716 * 120.03059 * 270.24990 * 4 3 2 20 20 O 1.35899 * 120.05124 * 0.02562 * 19 4 3 21 21 C 1.42899 * 116.99959 * 180.23060 * 20 19 4 22 22 H 1.09000 * 109.46536 * 60.00680 * 1 2 3 23 23 H 1.09002 * 109.46867 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46869 * 300.00045 * 1 2 3 25 25 H 1.08999 * 109.47859 * 59.99665 * 3 2 1 26 26 H 1.09002 * 109.47300 * 299.99298 * 3 2 1 27 27 H 1.09002 * 109.47152 * 324.72615 * 6 5 4 28 28 H 1.09001 * 109.46980 * 204.72715 * 6 5 4 29 29 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 30 30 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 31 31 H 0.97000 * 120.00354 * 180.02562 * 11 10 8 32 32 H 1.08000 * 119.94391 * 180.27977 * 16 5 4 33 33 H 1.08005 * 119.97513 * 179.97438 * 17 16 5 34 34 H 1.08004 * 120.03129 * 180.02562 * 18 17 16 35 35 H 1.09007 * 109.47389 * 180.02562 * 21 20 19 36 36 H 1.09004 * 109.47496 * 300.00312 * 21 20 19 37 37 H 1.09000 * 109.47269 * 60.00334 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2023 1.1316 -1.1952 6 6 3.4518 1.1913 -2.5007 7 6 3.1972 2.6525 -2.8762 8 6 2.4472 2.7122 -4.1820 9 1 2.1786 1.7993 -4.6927 10 6 2.1031 3.9323 -4.7242 11 7 2.4297 5.0440 -4.1021 12 14 1.1740 4.0064 -6.3431 13 1 0.9289 2.6274 -6.8366 14 1 -0.1248 4.6963 -6.1373 15 1 1.9791 4.7543 -7.3420 16 6 5.5809 1.0281 -1.1953 17 6 6.2726 0.9732 0.0008 18 6 5.5873 1.0224 1.1991 19 6 4.2037 1.1267 1.2019 20 8 3.5271 1.1747 2.3795 21 6 4.3041 1.1134 3.5771 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.6886 1.8464 0.8899 26 1 1.6887 1.8463 -0.8901 27 1 2.4992 0.6717 -2.3963 28 1 4.0428 0.7131 -3.2818 29 1 2.6062 3.1308 -2.0951 30 1 4.1497 3.1721 -2.9806 31 1 2.1873 5.9024 -4.4833 32 1 6.1186 0.9899 -2.1312 33 1 7.3495 0.8920 -0.0018 34 1 6.1279 0.9799 2.1331 35 1 3.6427 1.1606 4.4423 36 1 4.8645 0.1786 3.5992 37 1 4.9980 1.9536 3.6036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260237074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:34 Heat of formation + Delta-G solvation = -92.905550 kcal Electronic energy + Delta-G solvation = -18374.810610 eV Core-core repulsion = 15502.353252 eV Total energy + Delta-G solvation = -2872.457358 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.34308 -39.04872 -38.26148 -35.82211 -33.98322 -32.46655 -30.39633 -28.49604 -27.96293 -26.86817 -26.10854 -23.51002 -22.62804 -21.35297 -18.78235 -18.25570 -17.71972 -17.38182 -17.04260 -16.52123 -16.48173 -16.18356 -15.52610 -15.12840 -14.90307 -14.36425 -14.14640 -13.79175 -13.54391 -13.26522 -13.13708 -12.86029 -12.74182 -12.56130 -12.35428 -12.23148 -12.00159 -11.83926 -11.61996 -11.48519 -11.11626 -10.63586 -10.52699 -9.61612 -9.09360 -8.19648 -6.31415 0.32734 0.51395 1.40287 1.40410 1.54223 2.38534 2.41672 2.64523 3.13210 3.19094 3.86724 3.88077 4.13658 4.18918 4.22863 4.41487 4.43272 4.47069 4.51255 4.52240 4.60875 4.70507 4.74160 4.80830 4.83686 4.87042 4.98896 5.19507 5.36872 5.49230 5.51383 5.57226 5.82430 5.83605 5.90743 6.20198 6.23074 6.49462 6.84531 7.37778 8.92156 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023289 B = 0.005954 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.971604 B = 4701.668628 C = 5334.657843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.116 3.884 4 C -0.151 4.151 5 C -0.030 4.030 6 C -0.067 4.067 7 C 0.041 3.959 8 C -0.541 4.541 9 H 0.060 0.940 10 C 0.002 3.998 11 N -0.933 5.933 12 Si 0.965 3.035 13 H -0.262 1.262 14 H -0.278 1.278 15 H -0.277 1.277 16 C -0.174 4.174 17 C -0.067 4.067 18 C -0.220 4.220 19 C 0.136 3.864 20 O -0.334 6.334 21 C 0.018 3.982 22 H 0.037 0.963 23 H 0.105 0.895 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.067 0.933 29 H -0.007 1.007 30 H -0.008 1.008 31 H 0.264 0.736 32 H 0.131 0.869 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.118 0.882 36 H 0.068 0.932 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 -9.152 13.599 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C 0.040 3.960 4 C -0.152 4.152 5 C -0.030 4.030 6 C -0.105 4.105 7 C 0.004 3.996 8 C -0.579 4.579 9 H 0.079 0.921 10 C -0.196 4.196 11 N -0.573 5.573 12 Si 0.789 3.211 13 H -0.186 1.186 14 H -0.204 1.204 15 H -0.203 1.203 16 C -0.192 4.192 17 C -0.084 4.084 18 C -0.239 4.239 19 C 0.090 3.910 20 O -0.248 6.248 21 C -0.076 4.076 22 H 0.056 0.944 23 H 0.124 0.876 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.011 0.989 30 H 0.010 0.990 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.178 0.822 34 H 0.178 0.822 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.853 -9.127 13.639 16.857 hybrid contribution -0.576 0.743 -0.791 1.229 sum 3.277 -8.384 12.848 15.688 Atomic orbital electron populations 1.22923 0.79852 1.03899 1.00425 1.87869 1.21170 1.27738 1.95472 1.21047 0.89884 0.84891 1.00191 1.18932 0.94612 1.10358 0.91261 1.19980 0.94810 0.94096 0.94135 1.20599 0.98744 0.98568 0.92570 1.18886 0.94885 0.90827 0.94966 1.21684 1.36292 0.92732 1.07193 0.92132 1.25956 0.96923 0.95267 1.01414 1.70112 1.48120 0.98097 1.40955 0.85404 0.78155 0.78599 0.78933 1.18558 1.20359 1.20254 1.21200 0.92890 1.05347 0.99754 1.21301 1.01188 0.95160 0.90800 1.21465 0.91888 1.09761 1.00752 1.18901 0.91332 0.95499 0.85221 1.86053 1.37343 1.88197 1.13222 1.23368 0.97776 1.02390 0.84094 0.94439 0.87622 0.93057 0.92549 0.93456 0.92319 0.91406 0.98910 0.99005 0.92746 0.85068 0.82207 0.82208 0.86416 0.91373 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -15.12 10.68 -148.98 -1.59 -16.71 16 3 C 0.12 4.59 5.04 71.24 0.36 4.95 16 4 C -0.15 -5.95 5.52 -19.77 -0.11 -6.06 16 5 C -0.03 -1.21 5.13 -19.88 -0.10 -1.32 16 6 C -0.07 -3.06 4.58 29.85 0.14 -2.92 16 7 C 0.04 2.27 4.76 29.85 0.14 2.41 16 8 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 9 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 10 C 0.00 0.13 5.46 84.66 0.46 0.59 16 11 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 12 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 13 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 C -0.17 -5.93 9.68 22.28 0.22 -5.71 16 17 C -0.07 -1.81 10.04 22.25 0.22 -1.59 16 18 C -0.22 -5.92 9.04 22.37 0.20 -5.72 16 19 C 0.14 4.53 6.66 22.51 0.15 4.68 16 20 O -0.33 -9.94 9.55 -92.42 -0.88 -10.82 16 21 C 0.02 0.31 9.81 113.37 1.11 1.43 16 22 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 2.11 7.54 -2.39 -0.02 2.10 16 26 H 0.05 2.11 5.41 -2.39 -0.01 2.10 16 27 H 0.06 2.70 7.00 -2.39 -0.02 2.68 16 28 H 0.07 2.91 8.05 -2.39 -0.02 2.89 16 29 H -0.01 -0.44 6.88 -2.39 -0.02 -0.46 16 30 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 33 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 34 H 0.16 3.00 6.30 -2.91 -0.02 2.99 16 35 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.07 1.00 7.66 -2.38 -0.02 0.98 16 37 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 Total: -1.00 -71.21 309.60 5.16 -66.05 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.05 Total: 10.48 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 4.27 Total: -38.51 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.28 Total: -57.26 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -2.47 Total: -27.53 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -71.21 5.16 -66.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260237074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.853 kcal (2) G-P(sol) polarization free energy of solvation -71.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds