Wall clock time and date at job start Mon Mar 30 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35895 * 117.00003 * 2 1 4 4 C 1.38778 * 120.02997 * 0.28290 * 3 2 1 5 5 C 1.38172 * 120.05498 * 180.27168 * 4 3 2 6 6 C 1.38172 * 120.11348 * 359.72305 * 5 4 3 7 7 C 1.38779 * 120.05063 * 359.97438 * 6 5 4 8 8 O 1.35890 * 120.02261 * 180.02562 * 7 6 5 9 9 C 1.42907 * 117.00469 * 359.97438 * 8 7 6 10 10 C 1.38633 * 120.02860 * 180.02562 * 3 2 1 11 11 C 1.50703 * 120.05739 * 0.02562 * 10 3 2 12 12 C 1.52996 * 109.46850 * 61.40014 * 11 10 3 13 13 C 1.53000 * 109.47432 * 181.40650 * 11 10 3 14 14 C 1.50702 * 109.46719 * 301.40744 * 11 10 3 15 15 H 1.08003 * 120.00524 * 359.78698 * 14 11 10 16 16 C 1.37882 * 119.99698 * 179.79256 * 14 11 10 17 17 N 1.31516 * 120.00032 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00006 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47127 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47060 * 119.99865 * 18 16 14 21 21 H 1.48499 * 109.46829 * 239.99832 * 18 16 14 22 22 H 1.08995 * 109.47319 * 59.99343 * 1 2 3 23 23 H 1.09001 * 109.46999 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47089 * 299.99276 * 1 2 3 25 25 H 1.08007 * 119.96907 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.93880 * 179.74838 * 5 4 3 27 27 H 1.07998 * 119.97688 * 179.97438 * 6 5 4 28 28 H 1.08999 * 109.47188 * 179.97438 * 9 8 7 29 29 H 1.09002 * 109.46775 * 299.99748 * 9 8 7 30 30 H 1.09003 * 109.46763 * 59.99434 * 9 8 7 31 31 H 1.08997 * 109.47337 * 180.02562 * 12 11 10 32 32 H 1.09006 * 109.47052 * 60.00491 * 12 11 10 33 33 H 1.08997 * 109.47484 * 300.00713 * 12 11 10 34 34 H 1.09000 * 109.46454 * 299.99677 * 13 11 10 35 35 H 1.08996 * 109.47005 * 59.99721 * 13 11 10 36 36 H 1.08997 * 109.47033 * 180.02562 * 13 11 10 37 37 H 0.96993 * 120.00118 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2907 2.3751 0.0059 5 6 1.9174 3.6065 0.0003 6 6 3.2971 3.6822 -0.0055 7 6 4.0568 2.5208 -0.0052 8 8 5.4136 2.5959 -0.0103 9 6 5.9911 3.9030 -0.0166 10 6 3.4303 1.2841 -0.0005 11 6 4.2530 0.0214 -0.0017 12 6 3.9523 -0.7819 -1.2686 13 6 5.7397 0.3812 0.0333 14 6 3.9073 -0.8044 1.2106 15 1 3.1685 -0.4487 1.9136 16 6 4.5343 -2.0140 1.4223 17 7 5.4336 -2.4473 0.5661 18 14 4.1064 -3.0373 2.9254 19 1 3.0731 -2.3328 3.7261 20 1 3.5826 -4.3578 2.4924 21 1 5.3237 -3.2347 3.7527 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 0.2121 2.3186 0.0101 26 1 1.3278 4.5114 0.0008 27 1 3.7846 4.6458 -0.0104 28 1 7.0779 3.8201 -0.0198 29 1 5.6647 4.4401 -0.9072 30 1 5.6711 4.4459 0.8728 31 1 4.5469 -1.6954 -1.2693 32 1 4.2023 -0.1846 -2.1455 33 1 2.8932 -1.0382 -1.2935 34 1 5.9896 0.9785 -0.8436 35 1 5.9538 0.9535 0.9359 36 1 6.3346 -0.5320 0.0320 37 1 5.8744 -3.2984 0.7149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260241968.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:30 Heat of formation + Delta-G solvation = -34.039446 kcal Electronic energy + Delta-G solvation = -19556.738549 eV Core-core repulsion = 16686.833817 eV Total energy + Delta-G solvation = -2869.904732 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.04835 -38.31278 -35.74397 -35.13675 -31.46215 -28.88297 -28.73370 -27.47038 -26.16438 -25.22740 -24.87004 -22.11829 -21.00097 -19.24388 -17.77667 -16.15572 -15.84758 -15.55286 -15.24000 -15.03849 -14.90766 -14.31818 -14.23420 -12.94063 -12.67636 -12.51653 -12.18505 -11.87199 -11.60544 -11.33428 -11.21476 -10.95683 -10.89350 -10.74732 -10.70212 -10.40787 -10.17062 -10.12951 -9.77918 -9.26403 -8.91905 -8.66520 -8.10670 -7.48585 -7.25754 -5.76011 -3.82304 2.09200 2.10935 3.39096 3.46751 3.51800 3.69068 4.37680 4.43391 4.61067 5.26659 5.45382 5.50502 5.53143 5.54995 5.56598 5.59750 5.65494 5.85017 5.88465 5.90307 6.15286 6.70068 6.79383 6.82496 6.99736 7.04479 7.14398 7.26432 7.38567 7.48002 7.72547 7.90530 7.97309 8.05878 8.20323 8.35765 8.46908 8.69150 9.14849 9.78826 11.24861 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019219 B = 0.010395 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.562908 B = 2692.894707 C = 3588.244315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.275 6.275 3 C 0.165 3.835 4 C -0.253 4.253 5 C -0.073 4.073 6 C -0.249 4.249 7 C 0.144 3.856 8 O -0.274 6.274 9 C 0.008 3.992 10 C -0.096 4.096 11 C 0.110 3.890 12 C -0.127 4.127 13 C -0.120 4.120 14 C -0.473 4.473 15 H 0.052 0.948 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.887 3.113 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.287 1.287 22 H 0.045 0.955 23 H 0.093 0.907 24 H 0.046 0.954 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.001 0.999 33 H 0.037 0.963 34 H 0.024 0.976 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 9.938 -2.220 11.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.186 6.186 3 C 0.119 3.881 4 C -0.272 4.272 5 C -0.091 4.091 6 C -0.268 4.268 7 C 0.099 3.901 8 O -0.187 6.187 9 C -0.087 4.087 10 C -0.097 4.097 11 C 0.110 3.890 12 C -0.184 4.184 13 C -0.177 4.177 14 C -0.512 4.512 15 H 0.070 0.930 16 C -0.138 4.138 17 N -0.531 5.531 18 Si 0.715 3.285 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.214 1.214 22 H 0.063 0.937 23 H 0.111 0.889 24 H 0.065 0.935 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.020 0.980 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.813 9.425 -2.238 10.817 hybrid contribution -0.648 0.034 0.899 1.109 sum -5.461 9.460 -1.338 11.005 Atomic orbital electron populations 1.22972 0.80857 1.03129 1.00166 1.86463 1.18822 1.25723 1.87624 1.18526 0.91331 0.83913 0.94366 1.21028 0.99276 0.92588 1.14297 1.20387 0.93656 0.96426 0.98634 1.20974 0.94721 0.96941 1.14139 1.18661 0.82964 0.92745 0.95722 1.87219 1.16893 1.26393 1.88243 1.23038 0.99280 0.86121 1.00295 1.19444 0.91012 0.95171 1.04063 1.17065 0.90589 0.86501 0.94829 1.21815 1.00544 1.01519 0.94567 1.21875 0.98451 0.99226 0.98129 1.21032 1.21024 1.02797 1.06344 0.92961 1.24845 0.95329 0.97440 0.96206 1.69835 1.27119 1.20539 1.35596 0.86619 0.78024 0.80281 0.83527 1.20073 1.21315 1.21385 0.93664 0.88882 0.93508 0.86455 0.86866 0.86493 0.89096 0.93621 0.93532 0.89758 0.98005 0.94422 0.95739 0.94526 0.90354 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 101.05 0.99 1.36 16 2 O -0.27 -5.82 7.15 -19.41 -0.14 -5.96 16 3 C 0.16 3.50 6.16 -39.24 -0.24 3.26 16 4 C -0.25 -4.48 9.04 -39.41 -0.36 -4.83 16 5 C -0.07 -1.19 10.03 -39.63 -0.40 -1.59 16 6 C -0.25 -4.33 9.04 -39.41 -0.36 -4.68 16 7 C 0.14 2.99 6.54 -39.24 -0.26 2.73 16 8 O -0.27 -5.42 5.07 -19.39 -0.10 -5.52 16 9 C 0.01 0.11 9.81 101.05 0.99 1.11 16 10 C -0.10 -2.22 4.74 -104.33 -0.49 -2.72 16 11 C 0.11 2.85 0.48 -156.81 -0.08 2.77 16 12 C -0.13 -3.25 8.05 37.16 0.30 -2.95 16 13 C -0.12 -3.04 6.57 37.16 0.24 -2.80 16 14 C -0.47 -13.25 6.88 -34.44 -0.24 -13.49 16 15 H 0.05 1.51 7.45 -52.48 -0.39 1.12 16 16 C 0.06 1.71 5.15 -17.82 -0.09 1.61 16 17 N -0.89 -25.30 9.35 55.43 0.52 -24.78 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 22 H 0.04 0.59 7.67 -51.93 -0.40 0.19 16 23 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.05 0.64 7.65 -51.93 -0.40 0.24 16 25 H 0.12 1.74 6.29 -52.48 -0.33 1.41 16 26 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.12 1.69 6.29 -52.49 -0.33 1.36 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 30 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 31 H 0.08 2.32 6.05 -51.93 -0.31 2.01 16 32 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.04 0.94 6.25 -51.93 -0.32 0.62 16 34 H 0.02 0.58 6.51 -51.93 -0.34 0.24 16 35 H 0.04 0.92 6.77 -51.93 -0.35 0.57 16 36 H 0.08 2.16 6.09 -51.93 -0.32 1.84 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 287.85 15.07 4.34 4.34 Total: -1.00 -30.72 287.85 -5.49 -36.22 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.11 Total: -0.97 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 0.02 Total: -20.21 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.52 Total: -24.78 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.24 Total: -11.47 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.72 -5.49 -36.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241968.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.178 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds