Wall clock time and date at job start Mon Mar 30 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35895 * 117.00003 * 2 1 4 4 C 1.38778 * 120.02997 * 0.28290 * 3 2 1 5 5 C 1.38172 * 120.05498 * 180.27168 * 4 3 2 6 6 C 1.38172 * 120.11348 * 359.72305 * 5 4 3 7 7 C 1.38779 * 120.05063 * 359.97438 * 6 5 4 8 8 O 1.35890 * 120.02261 * 180.02562 * 7 6 5 9 9 C 1.42907 * 117.00469 * 359.97438 * 8 7 6 10 10 C 1.38633 * 120.02860 * 180.02562 * 3 2 1 11 11 C 1.50703 * 120.05739 * 0.02562 * 10 3 2 12 12 C 1.52996 * 109.46850 * 61.40014 * 11 10 3 13 13 C 1.53000 * 109.47432 * 181.40650 * 11 10 3 14 14 C 1.50702 * 109.46719 * 301.40744 * 11 10 3 15 15 H 1.08003 * 120.00524 * 359.78698 * 14 11 10 16 16 C 1.37882 * 119.99698 * 179.79256 * 14 11 10 17 17 N 1.31516 * 120.00032 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00006 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47127 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47060 * 119.99865 * 18 16 14 21 21 H 1.48499 * 109.46829 * 239.99832 * 18 16 14 22 22 H 1.08995 * 109.47319 * 59.99343 * 1 2 3 23 23 H 1.09001 * 109.46999 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47089 * 299.99276 * 1 2 3 25 25 H 1.08007 * 119.96907 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.93880 * 179.74838 * 5 4 3 27 27 H 1.07998 * 119.97688 * 179.97438 * 6 5 4 28 28 H 1.08999 * 109.47188 * 179.97438 * 9 8 7 29 29 H 1.09002 * 109.46775 * 299.99748 * 9 8 7 30 30 H 1.09003 * 109.46763 * 59.99434 * 9 8 7 31 31 H 1.08997 * 109.47337 * 180.02562 * 12 11 10 32 32 H 1.09006 * 109.47052 * 60.00491 * 12 11 10 33 33 H 1.08997 * 109.47484 * 300.00713 * 12 11 10 34 34 H 1.09000 * 109.46454 * 299.99677 * 13 11 10 35 35 H 1.08996 * 109.47005 * 59.99721 * 13 11 10 36 36 H 1.08997 * 109.47033 * 180.02562 * 13 11 10 37 37 H 0.96993 * 120.00118 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2907 2.3751 0.0059 5 6 1.9174 3.6065 0.0003 6 6 3.2971 3.6822 -0.0055 7 6 4.0568 2.5208 -0.0052 8 8 5.4136 2.5959 -0.0103 9 6 5.9911 3.9030 -0.0166 10 6 3.4303 1.2841 -0.0005 11 6 4.2530 0.0214 -0.0017 12 6 3.9523 -0.7819 -1.2686 13 6 5.7397 0.3812 0.0333 14 6 3.9073 -0.8044 1.2106 15 1 3.1685 -0.4487 1.9136 16 6 4.5343 -2.0140 1.4223 17 7 5.4336 -2.4473 0.5661 18 14 4.1064 -3.0373 2.9254 19 1 3.0731 -2.3328 3.7261 20 1 3.5826 -4.3578 2.4924 21 1 5.3237 -3.2347 3.7527 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 0.2121 2.3186 0.0101 26 1 1.3278 4.5114 0.0008 27 1 3.7846 4.6458 -0.0104 28 1 7.0779 3.8201 -0.0198 29 1 5.6647 4.4401 -0.9072 30 1 5.6711 4.4459 0.8728 31 1 4.5469 -1.6954 -1.2693 32 1 4.2023 -0.1846 -2.1455 33 1 2.8932 -1.0382 -1.2935 34 1 5.9896 0.9785 -0.8436 35 1 5.9538 0.9535 0.9359 36 1 6.3346 -0.5320 0.0320 37 1 5.8744 -3.2984 0.7149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260241968.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:30 Heat of formation + Delta-G solvation = -52.011640 kcal Electronic energy + Delta-G solvation = -19557.517882 eV Core-core repulsion = 16686.833817 eV Total energy + Delta-G solvation = -2870.684065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.49911 -39.71482 -37.28205 -36.85519 -33.42554 -30.33766 -30.24333 -28.79050 -27.43689 -27.19974 -26.90168 -23.65875 -22.37941 -21.04013 -19.21315 -17.98332 -17.34868 -16.96892 -16.81729 -16.62983 -16.24176 -15.98545 -15.62112 -14.80025 -14.21004 -14.00254 -13.52679 -13.41107 -13.20346 -13.04897 -12.98477 -12.66543 -12.55543 -12.33095 -12.22169 -12.16416 -12.00062 -11.81642 -11.54191 -11.13710 -10.69274 -10.67566 -10.21312 -8.85626 -8.84029 -7.86662 -5.99702 0.67885 0.69893 1.41068 1.43174 1.53813 2.38228 2.51753 3.03168 3.07338 3.35334 4.03677 4.26899 4.30869 4.34814 4.45763 4.49539 4.52610 4.60898 4.71287 4.79216 4.82661 5.00087 5.01701 5.15684 5.30404 5.39826 5.50899 5.56464 5.62974 5.68013 5.78956 5.80804 5.93033 6.28967 6.37484 6.60210 6.73957 6.85662 7.02103 7.63186 9.11438 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019219 B = 0.010395 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.562908 B = 2692.894707 C = 3588.244315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.314 6.314 3 C 0.149 3.851 4 C -0.253 4.253 5 C -0.060 4.060 6 C -0.247 4.247 7 C 0.133 3.867 8 O -0.307 6.307 9 C 0.002 3.998 10 C -0.148 4.148 11 C 0.105 3.895 12 C -0.114 4.114 13 C -0.099 4.099 14 C -0.480 4.480 15 H 0.035 0.965 16 C 0.016 3.984 17 N -0.910 5.910 18 Si 0.941 3.059 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.284 1.284 22 H 0.067 0.933 23 H 0.104 0.896 24 H 0.060 0.940 25 H 0.148 0.852 26 H 0.158 0.842 27 H 0.150 0.850 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.007 0.993 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.027 0.973 36 H 0.047 0.953 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 12.263 -1.987 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.227 6.227 3 C 0.103 3.897 4 C -0.272 4.272 5 C -0.077 4.077 6 C -0.266 4.266 7 C 0.088 3.912 8 O -0.221 6.221 9 C -0.093 4.093 10 C -0.149 4.149 11 C 0.105 3.895 12 C -0.171 4.171 13 C -0.156 4.156 14 C -0.519 4.519 15 H 0.053 0.947 16 C -0.181 4.181 17 N -0.551 5.551 18 Si 0.769 3.231 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.210 1.210 22 H 0.085 0.915 23 H 0.122 0.878 24 H 0.079 0.921 25 H 0.165 0.835 26 H 0.176 0.824 27 H 0.167 0.833 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.026 0.974 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.288 11.759 -2.005 13.485 hybrid contribution -0.232 -0.574 0.802 1.013 sum -6.520 11.185 -1.203 13.002 Atomic orbital electron populations 1.23263 0.78166 1.04564 1.01838 1.86371 1.21822 1.26657 1.87841 1.18756 0.91119 0.85063 0.94803 1.21368 1.00673 0.91838 1.13330 1.20950 0.93628 0.97535 0.95631 1.21331 0.95257 0.97052 1.12956 1.18835 0.83546 0.93073 0.95793 1.87038 1.16893 1.29916 1.88252 1.23331 1.00022 0.84075 1.01855 1.19372 0.92117 0.94984 1.08462 1.16958 0.91029 0.87975 0.93515 1.21634 0.99631 1.00489 0.95366 1.21639 0.98242 0.97636 0.98080 1.21168 1.20385 1.03364 1.06954 0.94707 1.25488 0.95488 0.98490 0.98600 1.69971 1.27719 1.20701 1.36746 0.85763 0.77725 0.78910 0.80726 1.20060 1.20836 1.21016 0.91484 0.87792 0.92105 0.83485 0.82409 0.83261 0.87537 0.91698 0.92102 0.92359 0.97383 0.94818 0.94838 0.95365 0.93408 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.81 113.37 1.11 1.58 16 2 O -0.31 -13.31 7.15 -92.37 -0.66 -13.98 16 3 C 0.15 6.22 6.16 22.49 0.14 6.36 16 4 C -0.25 -8.20 9.04 22.38 0.20 -7.99 16 5 C -0.06 -1.69 10.03 22.24 0.22 -1.47 16 6 C -0.25 -7.76 9.04 22.38 0.20 -7.56 16 7 C 0.13 5.36 6.54 22.49 0.15 5.51 16 8 O -0.31 -11.92 5.07 -92.31 -0.47 -12.39 16 9 C 0.00 0.04 9.81 113.37 1.11 1.15 16 10 C -0.15 -6.92 4.74 -19.67 -0.09 -7.02 16 11 C 0.11 5.60 0.48 -53.67 -0.03 5.58 16 12 C -0.11 -6.03 8.05 71.98 0.58 -5.46 16 13 C -0.10 -5.19 6.57 71.98 0.47 -4.72 16 14 C -0.48 -27.70 6.88 25.60 0.18 -27.52 16 15 H 0.03 2.07 7.45 -2.91 -0.02 2.05 16 16 C 0.02 0.94 5.15 84.66 0.44 1.37 16 17 N -0.91 -53.43 9.35 21.45 0.20 -53.23 16 18 Si 0.94 45.86 29.54 68.60 2.03 47.88 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 22 H 0.07 1.59 7.67 -2.39 -0.02 1.57 16 23 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 24 H 0.06 1.54 7.65 -2.39 -0.02 1.52 16 25 H 0.15 3.75 6.29 -2.91 -0.02 3.73 16 26 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 27 H 0.15 3.61 6.29 -2.91 -0.02 3.59 16 28 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.06 1.41 7.66 -2.39 -0.02 1.39 16 30 H 0.06 1.38 7.66 -2.39 -0.02 1.36 16 31 H 0.06 3.35 6.05 -2.39 -0.01 3.33 16 32 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 33 H 0.03 1.75 6.25 -2.39 -0.01 1.73 16 34 H 0.03 1.64 6.51 -2.39 -0.02 1.62 16 35 H 0.03 1.47 6.77 -2.39 -0.02 1.45 16 36 H 0.05 2.74 6.09 -2.39 -0.01 2.72 16 37 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -68.92 287.85 6.84 -62.08 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.06 Total: 9.81 kcal Atomic # 6 Polarization: -44.86 SS G_CDS: 4.68 Total: -40.17 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.20 Total: -53.23 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -1.13 Total: -26.37 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -68.92 6.84 -62.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241968.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.070 kcal (2) G-P(sol) polarization free energy of solvation -68.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds