Wall clock time and date at job start Mon Mar 30 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99722 * 2 1 4 4 C 1.38654 * 120.02865 * 90.00674 * 3 2 1 5 5 C 1.50703 * 120.05057 * 359.97438 * 4 3 2 6 6 C 1.38606 * 119.89437 * 179.97438 * 4 3 2 7 7 O 1.35893 * 120.03057 * 179.97438 * 6 4 3 8 8 C 1.38799 * 119.94295 * 359.97438 * 6 4 3 9 9 C 1.50706 * 119.96968 * 180.02562 * 8 6 4 10 10 C 1.38150 * 120.05675 * 0.27917 * 8 6 4 11 11 C 1.38204 * 120.10656 * 359.44700 * 10 8 6 12 12 C 1.50698 * 119.97439 * 180.29722 * 11 10 8 13 13 H 1.08993 * 109.47402 * 180.25733 * 12 11 10 14 14 C 1.53005 * 109.47109 * 300.25625 * 12 11 10 15 15 C 1.50702 * 109.46802 * 60.25310 * 12 11 10 16 16 H 1.07992 * 120.00238 * 0.02562 * 15 12 11 17 17 C 1.37885 * 119.99589 * 180.02562 * 15 12 11 18 18 N 1.31518 * 120.00140 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 119.99717 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47519 * 89.99581 * 19 17 15 21 21 H 1.48505 * 109.47195 * 209.99822 * 19 17 15 22 22 H 1.48510 * 109.47265 * 329.99709 * 19 17 15 23 23 H 1.08998 * 109.46667 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46945 * 299.99816 * 1 2 3 25 25 H 1.08995 * 109.47197 * 59.99973 * 1 2 3 26 26 H 1.09005 * 109.47199 * 269.98043 * 5 4 3 27 27 H 1.08993 * 109.47178 * 29.98232 * 5 4 3 28 28 H 1.09003 * 109.46857 * 149.98711 * 5 4 3 29 29 H 0.96705 * 114.00221 * 270.01845 * 7 6 4 30 30 H 1.08999 * 109.47015 * 90.00432 * 9 8 6 31 31 H 1.09000 * 109.46646 * 209.99584 * 9 8 6 32 32 H 1.09000 * 109.47248 * 330.00302 * 9 8 6 33 33 H 1.08001 * 119.94647 * 179.72424 * 10 8 6 34 34 H 1.08998 * 109.47012 * 180.02562 * 14 12 11 35 35 H 1.09002 * 109.46831 * 299.99738 * 14 12 11 36 36 H 1.09003 * 109.47307 * 59.99438 * 14 12 11 37 37 H 0.96998 * 119.99600 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3610 1.8291 1.2004 5 6 2.0194 1.1595 2.5066 6 6 2.9907 3.0639 1.1972 7 8 3.3003 3.6725 2.3721 8 6 3.3048 3.6782 -0.0072 9 6 3.9899 5.0205 -0.0114 10 6 2.9851 3.0627 -1.2019 11 6 2.3623 1.8290 -1.2013 12 6 2.0210 1.1572 -2.5064 13 1 1.5343 0.2025 -2.3073 14 6 1.0763 2.0535 -3.3096 15 6 3.2832 0.9227 -3.2957 16 1 4.2370 1.2290 -2.8925 17 6 3.2200 0.3170 -4.5328 18 7 2.0584 -0.0565 -5.0236 19 14 4.7845 0.0257 -5.5109 20 1 5.3449 -1.3050 -5.1638 21 1 4.4759 0.0693 -6.9629 22 1 5.7767 1.0812 -5.1838 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.0217 1.4652 2.8216 27 1 2.0441 0.0775 2.3776 28 1 2.7454 1.4517 3.2654 29 1 2.6029 4.2498 2.7118 30 1 5.0704 4.8769 -0.0122 31 1 3.6966 5.5753 -0.9026 32 1 3.6984 5.5801 0.8774 33 1 3.2263 3.5444 -2.1380 34 1 0.8291 1.5674 -4.2533 35 1 0.1634 2.2232 -2.7386 36 1 1.5630 3.0083 -3.5087 37 1 2.0142 -0.4830 -5.8937 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260244595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:49 Heat of formation + Delta-G solvation = -74.334140 kcal Electronic energy + Delta-G solvation = -18938.776102 eV Core-core repulsion = 16067.124061 eV Total energy + Delta-G solvation = -2871.652041 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.01276 -37.87385 -36.00297 -34.07195 -32.58246 -31.39423 -28.80349 -27.19458 -26.29985 -25.11406 -25.03639 -22.37292 -20.43556 -19.33056 -18.17383 -16.72691 -16.10529 -15.83979 -15.13955 -14.74192 -14.22970 -13.87722 -13.63105 -13.06928 -12.92084 -12.82930 -12.69361 -12.25407 -11.98211 -11.77501 -11.63183 -11.38176 -11.32989 -10.99542 -10.89160 -10.52900 -10.22230 -10.19064 -9.99666 -9.75373 -9.16368 -8.96839 -8.34043 -7.93073 -7.56708 -5.99282 -4.04808 1.71466 1.84381 3.31991 3.38247 3.42005 3.86066 4.41521 4.51701 4.68277 5.17188 5.30388 5.35433 5.48608 5.61612 5.69372 5.78370 5.81711 5.88383 5.98132 6.03278 6.09880 6.17063 6.25406 6.42302 6.55055 6.76091 6.85009 6.88620 7.09170 7.14506 7.21826 7.36333 7.72571 7.91253 7.98346 8.06873 8.20002 8.40947 8.97115 9.58925 11.06747 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.007709 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.745309 B = 3631.231285 C = 4317.287229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.325 6.325 3 C 0.087 3.913 4 C -0.130 4.130 5 C -0.102 4.102 6 C 0.079 3.921 7 O -0.493 6.493 8 C -0.117 4.117 9 C -0.101 4.101 10 C -0.093 4.093 11 C -0.045 4.045 12 C 0.072 3.928 13 H 0.046 0.954 14 C -0.132 4.132 15 C -0.503 4.503 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.087 0.913 24 H 0.035 0.965 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.376 0.624 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.005 0.995 36 H 0.028 0.972 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 6.437 11.134 13.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.241 6.241 3 C 0.044 3.956 4 C -0.131 4.131 5 C -0.159 4.159 6 C 0.035 3.965 7 O -0.302 6.302 8 C -0.118 4.118 9 C -0.158 4.158 10 C -0.111 4.111 11 C -0.046 4.046 12 C 0.054 3.946 13 H 0.064 0.936 14 C -0.190 4.190 15 C -0.541 4.541 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.106 0.894 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.229 0.771 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.148 0.852 34 H 0.105 0.895 35 H 0.024 0.976 36 H 0.047 0.953 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.415 5.862 10.914 12.622 hybrid contribution 0.273 0.182 -0.540 0.632 sum -2.142 6.044 10.374 12.196 Atomic orbital electron populations 1.22898 0.80005 1.02558 1.00142 1.86006 1.19048 1.24971 1.94118 1.18235 0.99429 0.86849 0.91129 1.20303 1.01750 0.95474 0.95541 1.20505 1.00718 1.00802 0.93890 1.17674 1.01938 0.92363 0.84508 1.84815 1.44526 1.64050 1.36762 1.20175 1.01345 0.97605 0.92635 1.20573 1.00046 0.93333 1.01809 1.20769 0.98368 0.95171 0.96784 1.21023 0.93954 0.92963 0.96622 1.17844 0.95974 0.94451 0.86358 0.93609 1.21817 0.95946 0.98743 1.02450 1.21077 0.92348 1.38926 1.01751 0.92542 1.24934 0.96059 0.95393 0.97513 1.69879 1.23487 1.41057 1.18531 0.86583 0.83591 0.78722 0.79077 1.20663 1.21240 1.19888 0.89430 0.94629 0.93211 0.92349 0.91160 0.91427 0.77060 0.91525 0.91873 0.92151 0.85173 0.89475 0.97617 0.95287 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.88 101.05 1.10 1.72 16 2 O -0.32 -6.60 8.30 -19.43 -0.16 -6.77 16 3 C 0.09 1.80 5.67 -39.24 -0.22 1.58 16 4 C -0.13 -2.33 5.91 -104.33 -0.62 -2.95 16 5 C -0.10 -1.50 9.57 36.01 0.34 -1.15 16 6 C 0.08 1.35 6.65 -39.24 -0.26 1.09 16 7 O -0.49 -6.93 11.59 -19.40 -0.22 -7.15 16 8 C -0.12 -2.05 5.89 -104.44 -0.62 -2.66 16 9 C -0.10 -1.40 9.79 36.01 0.35 -1.05 16 10 C -0.09 -1.87 8.36 -39.63 -0.33 -2.20 16 11 C -0.05 -1.01 4.75 -104.45 -0.50 -1.50 16 12 C 0.07 1.82 2.44 -92.92 -0.23 1.59 16 13 H 0.05 1.26 6.74 -51.93 -0.35 0.91 16 14 C -0.13 -3.14 8.78 37.16 0.33 -2.82 16 15 C -0.50 -13.91 8.25 -34.44 -0.28 -14.20 16 16 H 0.06 1.58 7.61 -52.49 -0.40 1.18 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.84 8.11 -51.93 -0.42 0.42 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.06 7.53 -51.93 -0.39 0.67 16 28 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 29 H 0.38 3.47 9.06 45.56 0.41 3.88 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.06 0.72 7.53 -51.93 -0.39 0.33 16 33 H 0.13 2.62 7.56 -52.49 -0.40 2.22 16 34 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 35 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.03 0.65 7.37 -51.93 -0.38 0.27 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 306.49 15.07 4.62 4.62 Total: -1.00 -30.65 306.49 -5.88 -36.53 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.69 Total: 1.88 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -1.02 Total: -20.93 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.63 Total: -24.68 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.39 Total: -13.92 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.65 -5.88 -36.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260244595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.808 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds