Wall clock time and date at job start Mon Mar 30 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99722 * 2 1 4 4 C 1.38654 * 120.02865 * 90.00674 * 3 2 1 5 5 C 1.50703 * 120.05057 * 359.97438 * 4 3 2 6 6 C 1.38606 * 119.89437 * 179.97438 * 4 3 2 7 7 O 1.35893 * 120.03057 * 179.97438 * 6 4 3 8 8 C 1.38799 * 119.94295 * 359.97438 * 6 4 3 9 9 C 1.50706 * 119.96968 * 180.02562 * 8 6 4 10 10 C 1.38150 * 120.05675 * 0.27917 * 8 6 4 11 11 C 1.38204 * 120.10656 * 359.44700 * 10 8 6 12 12 C 1.50698 * 119.97439 * 180.29722 * 11 10 8 13 13 H 1.08993 * 109.47402 * 180.25733 * 12 11 10 14 14 C 1.53005 * 109.47109 * 300.25625 * 12 11 10 15 15 C 1.50702 * 109.46802 * 60.25310 * 12 11 10 16 16 H 1.07992 * 120.00238 * 0.02562 * 15 12 11 17 17 C 1.37885 * 119.99589 * 180.02562 * 15 12 11 18 18 N 1.31518 * 120.00140 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 119.99717 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47519 * 89.99581 * 19 17 15 21 21 H 1.48505 * 109.47195 * 209.99822 * 19 17 15 22 22 H 1.48510 * 109.47265 * 329.99709 * 19 17 15 23 23 H 1.08998 * 109.46667 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46945 * 299.99816 * 1 2 3 25 25 H 1.08995 * 109.47197 * 59.99973 * 1 2 3 26 26 H 1.09005 * 109.47199 * 269.98043 * 5 4 3 27 27 H 1.08993 * 109.47178 * 29.98232 * 5 4 3 28 28 H 1.09003 * 109.46857 * 149.98711 * 5 4 3 29 29 H 0.96705 * 114.00221 * 270.01845 * 7 6 4 30 30 H 1.08999 * 109.47015 * 90.00432 * 9 8 6 31 31 H 1.09000 * 109.46646 * 209.99584 * 9 8 6 32 32 H 1.09000 * 109.47248 * 330.00302 * 9 8 6 33 33 H 1.08001 * 119.94647 * 179.72424 * 10 8 6 34 34 H 1.08998 * 109.47012 * 180.02562 * 14 12 11 35 35 H 1.09002 * 109.46831 * 299.99738 * 14 12 11 36 36 H 1.09003 * 109.47307 * 59.99438 * 14 12 11 37 37 H 0.96998 * 119.99600 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3610 1.8291 1.2004 5 6 2.0194 1.1595 2.5066 6 6 2.9907 3.0639 1.1972 7 8 3.3003 3.6725 2.3721 8 6 3.3048 3.6782 -0.0072 9 6 3.9899 5.0205 -0.0114 10 6 2.9851 3.0627 -1.2019 11 6 2.3623 1.8290 -1.2013 12 6 2.0210 1.1572 -2.5064 13 1 1.5343 0.2025 -2.3073 14 6 1.0763 2.0535 -3.3096 15 6 3.2832 0.9227 -3.2957 16 1 4.2370 1.2290 -2.8925 17 6 3.2200 0.3170 -4.5328 18 7 2.0584 -0.0565 -5.0236 19 14 4.7845 0.0257 -5.5109 20 1 5.3449 -1.3050 -5.1638 21 1 4.4759 0.0693 -6.9629 22 1 5.7767 1.0812 -5.1838 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.0217 1.4652 2.8216 27 1 2.0441 0.0775 2.3776 28 1 2.7454 1.4517 3.2654 29 1 2.6029 4.2498 2.7118 30 1 5.0704 4.8769 -0.0122 31 1 3.6966 5.5753 -0.9026 32 1 3.6984 5.5801 0.8774 33 1 3.2263 3.5444 -2.1380 34 1 0.8291 1.5674 -4.2533 35 1 0.1634 2.2232 -2.7386 36 1 1.5630 3.0083 -3.5087 37 1 2.0142 -0.4830 -5.8937 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260244595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:49 Heat of formation + Delta-G solvation = -93.626907 kcal Electronic energy + Delta-G solvation = -18939.612699 eV Core-core repulsion = 16067.124061 eV Total energy + Delta-G solvation = -2872.488639 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42712 -39.21155 -37.50126 -35.82031 -33.88996 -33.22277 -30.35744 -28.48904 -27.63421 -27.20823 -26.39596 -24.04282 -21.79216 -21.01616 -19.50482 -18.43784 -17.64784 -17.43903 -16.66695 -16.54821 -15.50076 -15.33632 -15.08457 -14.65319 -14.37585 -14.18525 -13.95054 -13.66007 -13.53122 -13.18505 -13.01704 -12.97399 -12.84148 -12.75541 -12.55877 -12.28544 -12.09507 -11.82285 -11.47000 -11.36974 -10.96319 -10.72346 -10.45320 -9.34105 -9.05437 -8.10137 -6.23163 0.28927 0.41623 1.39152 1.40286 1.50341 2.39469 2.50977 3.04799 3.17414 3.45387 3.92470 4.02292 4.12984 4.40225 4.48028 4.54424 4.66659 4.70778 4.75728 4.76302 4.82243 4.84928 4.86152 4.98390 5.04760 5.19589 5.26186 5.34355 5.42810 5.55821 5.57024 5.67342 5.87845 6.05351 6.05927 6.35024 6.68404 6.84522 6.94559 7.43556 8.94398 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.007709 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.745309 B = 3631.231285 C = 4317.287229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.349 6.349 3 C 0.072 3.928 4 C -0.135 4.135 5 C -0.096 4.096 6 C 0.095 3.905 7 O -0.489 6.489 8 C -0.118 4.118 9 C -0.099 4.099 10 C -0.105 4.105 11 C -0.081 4.081 12 C 0.077 3.923 13 H 0.012 0.988 14 C -0.119 4.119 15 C -0.520 4.520 16 H 0.045 0.955 17 C 0.015 3.985 18 N -0.915 5.915 19 Si 0.952 3.048 20 H -0.280 1.280 21 H -0.278 1.278 22 H -0.269 1.269 23 H 0.107 0.893 24 H 0.063 0.937 25 H 0.031 0.969 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.403 0.597 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.060 0.940 35 H 0.022 0.978 36 H 0.032 0.968 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.422 7.742 13.117 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 C 0.029 3.971 4 C -0.136 4.136 5 C -0.153 4.153 6 C 0.050 3.950 7 O -0.301 6.301 8 C -0.118 4.118 9 C -0.155 4.155 10 C -0.123 4.123 11 C -0.081 4.081 12 C 0.059 3.941 13 H 0.030 0.970 14 C -0.177 4.177 15 C -0.558 4.558 16 H 0.064 0.936 17 C -0.183 4.183 18 N -0.555 5.555 19 Si 0.777 3.223 20 H -0.206 1.206 21 H -0.204 1.204 22 H -0.193 1.193 23 H 0.125 0.875 24 H 0.081 0.919 25 H 0.049 0.951 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.261 0.739 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.051 0.949 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.902 7.187 12.915 14.902 hybrid contribution 0.077 -0.191 -1.032 1.052 sum -1.825 6.996 11.883 13.910 Atomic orbital electron populations 1.23073 0.78148 1.04046 1.00529 1.85945 1.21063 1.25393 1.94266 1.18401 1.00084 0.87022 0.91632 1.20615 1.01234 0.95852 0.95895 1.20529 1.02491 0.99983 0.92270 1.17680 0.99949 0.91985 0.85340 1.84751 1.45776 1.64402 1.35176 1.20481 1.00677 0.98899 0.91792 1.20641 0.99745 0.91563 1.03560 1.20719 0.99130 0.94762 0.97703 1.20836 0.97000 0.94460 0.95848 1.17592 0.94878 0.93453 0.88173 0.97021 1.21625 0.96561 0.98317 1.01179 1.21348 0.92959 1.39061 1.02424 0.93632 1.25675 0.98949 0.95223 0.98468 1.70002 1.25143 1.41503 1.18831 0.85651 0.80161 0.78501 0.77945 1.20553 1.20361 1.19323 0.87496 0.91853 0.95065 0.89796 0.92009 0.90169 0.73884 0.91234 0.91067 0.89552 0.86211 0.92108 0.95925 0.94869 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.15 10.88 113.37 1.23 2.38 16 2 O -0.35 -14.40 8.30 -92.43 -0.77 -15.17 16 3 C 0.07 2.98 5.67 22.49 0.13 3.11 16 4 C -0.13 -4.59 5.91 -19.68 -0.12 -4.71 16 5 C -0.10 -2.53 9.57 71.24 0.68 -1.84 16 6 C 0.10 2.97 6.65 22.49 0.15 3.12 16 7 O -0.49 -11.57 11.59 -92.35 -1.07 -12.64 16 8 C -0.12 -3.91 5.89 -19.75 -0.12 -4.02 16 9 C -0.10 -2.45 9.79 71.24 0.70 -1.75 16 10 C -0.10 -4.25 8.36 22.24 0.19 -4.07 16 11 C -0.08 -3.69 4.75 -19.75 -0.09 -3.78 16 12 C 0.08 4.08 2.44 -12.28 -0.03 4.05 16 13 H 0.01 0.68 6.74 -2.39 -0.02 0.66 16 14 C -0.12 -5.89 8.78 71.98 0.63 -5.26 16 15 C -0.52 -29.76 8.25 25.60 0.21 -29.55 16 16 H 0.05 2.63 7.61 -2.91 -0.02 2.61 16 17 C 0.02 0.87 5.30 84.66 0.45 1.32 16 18 N -0.92 -53.55 11.32 21.45 0.24 -53.30 16 19 Si 0.95 44.82 29.54 68.60 2.03 46.85 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.03 1.09 8.11 -2.39 -0.02 1.07 16 26 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.06 1.74 7.53 -2.39 -0.02 1.72 16 28 H 0.08 1.90 7.53 -2.39 -0.02 1.88 16 29 H 0.40 5.33 9.06 -74.05 -0.67 4.66 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 32 H 0.09 1.68 7.53 -2.39 -0.02 1.67 16 33 H 0.12 4.95 7.56 -2.91 -0.02 4.93 16 34 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 35 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.03 1.55 7.37 -2.39 -0.02 1.53 16 37 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -67.71 306.49 4.84 -62.87 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.40 Total: 12.40 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 4.01 Total: -41.01 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.24 Total: -53.30 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -1.84 Total: -27.81 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.71 4.84 -62.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260244595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.754 kcal (2) G-P(sol) polarization free energy of solvation -67.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds