Wall clock time and date at job start Mon Mar 30 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00033 * 2 1 4 4 C 1.50704 * 109.47011 * 180.02562 * 3 2 1 5 5 C 1.38161 * 120.02850 * 0.27291 * 4 3 2 6 6 C 1.38244 * 120.05475 * 180.29632 * 5 4 3 7 7 C 1.38285 * 120.11316 * 359.68669 * 6 5 4 8 8 C 1.38123 * 120.05589 * 0.03714 * 7 6 5 9 9 C 1.50698 * 120.03129 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47376 * 243.23250 * 9 8 7 11 11 C 1.53004 * 109.46850 * 3.22863 * 9 8 7 12 12 C 1.50693 * 109.47113 * 123.22927 * 9 8 7 13 13 H 1.07995 * 120.00429 * 359.65636 * 12 9 8 14 14 C 1.37877 * 119.99933 * 179.65667 * 12 9 8 15 15 N 1.31521 * 120.00161 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 120.00146 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47012 * 60.00022 * 16 14 12 18 18 H 1.48494 * 109.47096 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46988 * 300.00214 * 16 14 12 20 20 C 1.38717 * 120.02670 * 180.02562 * 4 3 2 21 21 O 1.35899 * 120.05796 * 359.97438 * 20 4 3 22 22 H 1.09000 * 109.46723 * 300.00036 * 1 2 3 23 23 H 1.09000 * 109.47410 * 59.99401 * 1 2 3 24 24 H 1.08995 * 109.46988 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47250 * 60.00164 * 3 2 1 26 26 H 1.09004 * 109.47579 * 300.00130 * 3 2 1 27 27 H 1.08001 * 119.97531 * 0.02562 * 5 4 3 28 28 H 1.08005 * 119.94754 * 179.70608 * 6 5 4 29 29 H 1.08002 * 119.97514 * 180.02562 * 7 6 5 30 30 H 1.09003 * 109.47577 * 59.99531 * 10 9 8 31 31 H 1.09004 * 109.47429 * 180.02562 * 10 9 8 32 32 H 1.09001 * 109.47339 * 299.99832 * 10 9 8 33 33 H 1.09002 * 109.46828 * 60.00313 * 11 9 8 34 34 H 1.09004 * 109.46749 * 180.02562 * 11 9 8 35 35 H 1.08993 * 109.46960 * 299.99851 * 11 9 8 36 36 H 0.96996 * 120.00039 * 179.97438 * 15 14 12 37 37 H 0.96696 * 114.00098 * 269.73379 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1073 -0.0606 -0.0068 6 6 5.4854 -0.1705 -0.0012 7 6 6.2720 0.9668 0.0040 8 6 5.6823 2.2158 0.0045 9 6 6.5401 3.4548 0.0108 10 6 6.2911 4.2411 1.2994 11 6 8.0149 3.0545 -0.0654 12 6 6.1907 4.3137 -1.1772 13 1 5.4281 3.9917 -1.8707 14 6 6.8447 5.5106 -1.3786 15 7 7.7738 5.9026 -0.5343 16 14 6.4112 6.5757 -2.8508 17 1 4.9779 6.9574 -2.7806 18 1 7.2512 7.8002 -2.8404 19 1 6.6603 5.8157 -4.1020 20 6 4.2994 2.3288 -0.0002 21 8 3.7168 3.5566 0.0003 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6887 1.8463 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 3.4952 -0.9504 -0.0116 28 1 5.9485 -1.1462 -0.0012 29 1 7.3484 0.8784 0.0080 30 1 6.5437 3.6198 2.1588 31 1 6.9112 5.1375 1.3038 32 1 5.2404 4.5263 1.3538 33 1 8.1923 2.4944 -0.9835 34 1 8.6353 3.9507 -0.0604 35 1 8.2675 2.4333 0.7939 36 1 8.2342 6.7445 -0.6762 37 1 3.5519 3.9140 -0.8830 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260268724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:32 Heat of formation + Delta-G solvation = -67.963620 kcal Electronic energy + Delta-G solvation = -18898.965219 eV Core-core repulsion = 16027.589424 eV Total energy + Delta-G solvation = -2871.375795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.59113 -37.65383 -35.78810 -35.21559 -31.83145 -30.45249 -28.24700 -27.04982 -25.91373 -25.19907 -24.77002 -21.98114 -20.96283 -18.65554 -17.59918 -16.44959 -15.86715 -15.77606 -15.60695 -14.77917 -14.56665 -14.41230 -13.81227 -13.11132 -12.86339 -12.60771 -12.52412 -11.80634 -11.66075 -11.28985 -11.24065 -11.08450 -10.92553 -10.75529 -10.68251 -10.35237 -10.16246 -10.11373 -9.75073 -9.48638 -9.14273 -8.81604 -8.31997 -7.93946 -7.61242 -5.96654 -4.06656 1.91183 2.13499 3.28590 3.34284 3.35976 3.81115 4.31370 4.43771 5.08348 5.13610 5.27564 5.30061 5.37744 5.47724 5.57028 5.64282 5.71188 5.82059 6.10508 6.27415 6.53200 6.68689 6.79240 6.85553 6.92096 7.01686 7.08867 7.21713 7.32643 7.38952 7.47531 7.56850 7.71650 7.75585 8.15076 8.19743 8.44296 8.54437 8.89481 9.56593 11.04163 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025576 B = 0.007033 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.521957 B = 3980.230511 C = 4605.393375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.116 3.884 4 C -0.131 4.131 5 C -0.111 4.111 6 C -0.138 4.138 7 C -0.120 4.120 8 C -0.053 4.053 9 C 0.103 3.897 10 C -0.127 4.127 11 C -0.134 4.134 12 C -0.493 4.493 13 H 0.049 0.951 14 C 0.067 3.933 15 N -0.884 5.884 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.279 1.279 20 C 0.119 3.881 21 O -0.484 6.484 22 H 0.040 0.960 23 H 0.039 0.961 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.002 0.998 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.027 0.973 34 H 0.085 0.915 35 H 0.011 0.989 36 H 0.260 0.740 37 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.837 -8.303 0.507 12.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C 0.040 3.960 4 C -0.131 4.131 5 C -0.129 4.129 6 C -0.156 4.156 7 C -0.138 4.138 8 C -0.054 4.054 9 C 0.103 3.897 10 C -0.184 4.184 11 C -0.191 4.191 12 C -0.531 4.531 13 H 0.067 0.933 14 C -0.134 4.134 15 N -0.523 5.523 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.205 1.205 20 C 0.074 3.926 21 O -0.295 6.295 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.102 0.898 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.130 0.870 29 H 0.142 0.858 30 H 0.021 0.979 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.104 0.896 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -8.574 -8.354 1.145 12.026 hybrid contribution -0.454 0.864 -1.384 1.693 sum -9.028 -7.490 -0.238 11.733 Atomic orbital electron populations 1.22702 0.81384 1.02421 0.99925 1.87841 1.19259 1.28257 1.95469 1.21023 0.90656 0.83897 1.00446 1.19891 0.93497 0.93884 1.05874 1.20585 0.94275 0.96447 1.01592 1.21054 0.93730 0.98109 1.02745 1.21217 1.00203 0.91722 1.00687 1.20987 0.93377 0.96795 0.94214 1.17132 0.89943 0.87529 0.95136 1.21813 1.01331 1.01080 0.94202 1.21912 0.99755 1.00942 0.96509 1.20796 1.20580 1.03676 1.08053 0.93283 1.24871 0.95015 0.97418 0.96137 1.69804 1.24569 1.22021 1.35874 0.86705 0.78380 0.79926 0.83223 1.20340 1.21329 1.20502 1.17985 0.90104 0.83624 1.00868 1.84726 1.81070 1.30496 1.33184 0.94159 0.94204 0.89844 0.92051 0.92628 0.85992 0.86955 0.85787 0.97881 0.89850 0.93743 0.95374 0.89649 0.96979 0.92983 0.75919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.64 9.18 -35.23 -0.32 -5.96 16 3 C 0.12 1.77 5.80 36.01 0.21 1.98 16 4 C -0.13 -2.38 5.89 -104.47 -0.62 -3.00 16 5 C -0.11 -1.93 9.37 -39.61 -0.37 -2.30 16 6 C -0.14 -2.40 10.04 -39.56 -0.40 -2.80 16 7 C -0.12 -2.37 8.98 -39.61 -0.36 -2.73 16 8 C -0.05 -1.17 4.73 -104.47 -0.49 -1.66 16 9 C 0.10 2.48 0.48 -156.82 -0.08 2.41 16 10 C -0.13 -3.12 8.06 37.16 0.30 -2.82 16 11 C -0.13 -3.16 6.92 37.16 0.26 -2.90 16 12 C -0.49 -12.62 6.72 -34.44 -0.23 -12.85 16 13 H 0.05 1.23 6.72 -52.49 -0.35 0.88 16 14 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 15 N -0.88 -23.81 9.35 55.43 0.52 -23.29 16 16 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.12 2.43 6.13 -39.21 -0.24 2.19 16 21 O -0.48 -9.67 9.94 -19.42 -0.19 -9.87 16 22 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.12 1.94 7.01 -52.49 -0.37 1.58 16 28 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 29 H 0.12 2.34 5.90 -52.49 -0.31 2.03 16 30 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.08 2.21 6.04 -51.93 -0.31 1.89 16 32 H 0.04 1.09 6.40 -51.93 -0.33 0.76 16 33 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 34 H 0.08 2.20 6.10 -51.93 -0.32 1.89 16 35 H 0.01 0.25 7.36 -51.93 -0.38 -0.13 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.38 6.77 8.03 45.56 0.37 7.14 16 LS Contribution 295.07 15.07 4.45 4.45 Total: -1.00 -28.19 295.07 -6.07 -34.26 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.50 Total: 6.44 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -1.00 Total: -21.39 kcal Atomic # 7 Polarization: -23.81 SS G_CDS: 0.52 Total: -23.29 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.52 Total: -15.83 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.19 -6.07 -34.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260268724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.702 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds