Wall clock time and date at job start Mon Mar 30 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00033 * 2 1 4 4 C 1.50704 * 109.47011 * 180.02562 * 3 2 1 5 5 C 1.38161 * 120.02850 * 0.27291 * 4 3 2 6 6 C 1.38244 * 120.05475 * 180.29632 * 5 4 3 7 7 C 1.38285 * 120.11316 * 359.68669 * 6 5 4 8 8 C 1.38123 * 120.05589 * 0.03714 * 7 6 5 9 9 C 1.50698 * 120.03129 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47376 * 243.23250 * 9 8 7 11 11 C 1.53004 * 109.46850 * 3.22863 * 9 8 7 12 12 C 1.50693 * 109.47113 * 123.22927 * 9 8 7 13 13 H 1.07995 * 120.00429 * 359.65636 * 12 9 8 14 14 C 1.37877 * 119.99933 * 179.65667 * 12 9 8 15 15 N 1.31521 * 120.00161 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 120.00146 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47012 * 60.00022 * 16 14 12 18 18 H 1.48494 * 109.47096 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46988 * 300.00214 * 16 14 12 20 20 C 1.38717 * 120.02670 * 180.02562 * 4 3 2 21 21 O 1.35899 * 120.05796 * 359.97438 * 20 4 3 22 22 H 1.09000 * 109.46723 * 300.00036 * 1 2 3 23 23 H 1.09000 * 109.47410 * 59.99401 * 1 2 3 24 24 H 1.08995 * 109.46988 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47250 * 60.00164 * 3 2 1 26 26 H 1.09004 * 109.47579 * 300.00130 * 3 2 1 27 27 H 1.08001 * 119.97531 * 0.02562 * 5 4 3 28 28 H 1.08005 * 119.94754 * 179.70608 * 6 5 4 29 29 H 1.08002 * 119.97514 * 180.02562 * 7 6 5 30 30 H 1.09003 * 109.47577 * 59.99531 * 10 9 8 31 31 H 1.09004 * 109.47429 * 180.02562 * 10 9 8 32 32 H 1.09001 * 109.47339 * 299.99832 * 10 9 8 33 33 H 1.09002 * 109.46828 * 60.00313 * 11 9 8 34 34 H 1.09004 * 109.46749 * 180.02562 * 11 9 8 35 35 H 1.08993 * 109.46960 * 299.99851 * 11 9 8 36 36 H 0.96996 * 120.00039 * 179.97438 * 15 14 12 37 37 H 0.96696 * 114.00098 * 269.73379 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1073 -0.0606 -0.0068 6 6 5.4854 -0.1705 -0.0012 7 6 6.2720 0.9668 0.0040 8 6 5.6823 2.2158 0.0045 9 6 6.5401 3.4548 0.0108 10 6 6.2911 4.2411 1.2994 11 6 8.0149 3.0545 -0.0654 12 6 6.1907 4.3137 -1.1772 13 1 5.4281 3.9917 -1.8707 14 6 6.8447 5.5106 -1.3786 15 7 7.7738 5.9026 -0.5343 16 14 6.4112 6.5757 -2.8508 17 1 4.9779 6.9574 -2.7806 18 1 7.2512 7.8002 -2.8404 19 1 6.6603 5.8157 -4.1020 20 6 4.2994 2.3288 -0.0002 21 8 3.7168 3.5566 0.0003 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6887 1.8463 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 3.4952 -0.9504 -0.0116 28 1 5.9485 -1.1462 -0.0012 29 1 7.3484 0.8784 0.0080 30 1 6.5437 3.6198 2.1588 31 1 6.9112 5.1375 1.3038 32 1 5.2404 4.5263 1.3538 33 1 8.1923 2.4944 -0.9835 34 1 8.6353 3.9507 -0.0604 35 1 8.2675 2.4333 0.7939 36 1 8.2342 6.7445 -0.6762 37 1 3.5519 3.9140 -0.8830 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260268724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:32 Heat of formation + Delta-G solvation = -84.664302 kcal Electronic energy + Delta-G solvation = -18899.689415 eV Core-core repulsion = 16027.589424 eV Total energy + Delta-G solvation = -2872.099991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.06940 -38.78514 -37.31511 -36.91354 -33.61349 -31.92097 -29.81950 -28.31251 -27.43456 -27.17890 -26.09638 -23.55998 -22.43197 -20.35482 -19.11829 -18.00949 -17.26950 -17.17183 -16.80462 -16.39457 -15.98879 -15.81639 -15.32325 -14.75597 -14.53987 -13.95934 -13.69745 -13.42423 -13.25078 -13.04057 -12.79425 -12.64310 -12.50403 -12.46021 -12.23273 -12.06532 -12.05441 -11.79512 -11.34321 -10.92815 -10.76450 -10.61339 -10.28566 -9.36855 -9.15927 -7.94018 -6.09243 0.47476 0.65345 1.46409 1.47693 1.53244 2.48473 2.77972 2.90282 3.28468 3.64927 3.95910 4.22268 4.29044 4.36724 4.45516 4.57246 4.62188 4.70301 4.78061 4.86698 4.89036 5.00827 5.03452 5.11776 5.19750 5.34740 5.48527 5.58998 5.65629 5.67846 5.73823 5.84770 6.11212 6.22985 6.25628 6.29048 6.48725 6.92210 7.07139 7.56065 9.04883 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025576 B = 0.007033 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.521957 B = 3980.230511 C = 4605.393375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.121 3.879 4 C -0.133 4.133 5 C -0.108 4.108 6 C -0.129 4.129 7 C -0.132 4.132 8 C -0.084 4.084 9 C 0.097 3.903 10 C -0.115 4.115 11 C -0.124 4.124 12 C -0.498 4.498 13 H 0.049 0.951 14 C 0.022 3.978 15 N -0.907 5.907 16 Si 0.945 3.055 17 H -0.270 1.270 18 H -0.291 1.291 19 H -0.278 1.278 20 C 0.103 3.897 21 O -0.493 6.493 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.103 0.897 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.142 0.858 28 H 0.147 0.853 29 H 0.127 0.873 30 H 0.007 0.993 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.027 0.973 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.257 0.743 37 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.319 -9.926 -0.028 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.045 3.955 4 C -0.134 4.134 5 C -0.126 4.126 6 C -0.147 4.147 7 C -0.150 4.150 8 C -0.085 4.085 9 C 0.097 3.903 10 C -0.173 4.173 11 C -0.181 4.181 12 C -0.536 4.536 13 H 0.067 0.933 14 C -0.176 4.176 15 N -0.547 5.547 16 Si 0.772 3.228 17 H -0.195 1.195 18 H -0.217 1.217 19 H -0.204 1.204 20 C 0.058 3.942 21 O -0.305 6.305 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.121 0.879 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.160 0.840 28 H 0.165 0.835 29 H 0.145 0.855 30 H 0.026 0.974 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.073 -9.985 0.607 14.196 hybrid contribution -0.059 1.275 -1.189 1.744 sum -10.132 -8.710 -0.582 13.374 Atomic orbital electron populations 1.22954 0.79183 1.04094 1.00852 1.87791 1.21601 1.27513 1.95628 1.20920 0.88949 0.84655 1.00980 1.20168 0.95171 0.93416 1.04619 1.20901 0.94590 0.96807 1.00300 1.21382 0.93684 0.98794 1.00838 1.21329 1.00700 0.91797 1.01188 1.20901 0.93976 0.96591 0.96994 1.17087 0.90546 0.88613 0.94088 1.21659 1.00165 1.00310 0.95156 1.21766 0.99325 0.99899 0.97136 1.21048 1.20173 1.03911 1.08461 0.93316 1.25521 0.95142 0.98643 0.98320 1.69946 1.25416 1.22142 1.37192 0.85815 0.78292 0.78216 0.80442 1.19544 1.21693 1.20405 1.18108 0.89961 0.84282 1.01834 1.84694 1.81014 1.30886 1.33866 0.93341 0.93171 0.87864 0.91976 0.91549 0.84042 0.83544 0.85516 0.97373 0.92183 0.94495 0.95342 0.92199 0.95499 0.93367 0.75239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -10.58 9.18 -148.98 -1.37 -11.95 16 3 C 0.12 3.44 5.80 71.24 0.41 3.86 16 4 C -0.13 -4.60 5.89 -19.77 -0.12 -4.72 16 5 C -0.11 -3.46 9.37 22.25 0.21 -3.25 16 6 C -0.13 -4.11 10.04 22.28 0.22 -3.89 16 7 C -0.13 -5.02 8.98 22.25 0.20 -4.82 16 8 C -0.08 -3.65 4.73 -19.77 -0.09 -3.74 16 9 C 0.10 4.71 0.48 -53.68 -0.03 4.69 16 10 C -0.12 -5.78 8.06 71.98 0.58 -5.20 16 11 C -0.12 -5.90 6.92 71.98 0.50 -5.40 16 12 C -0.50 -25.66 6.72 25.60 0.17 -25.48 16 13 H 0.05 2.45 6.72 -2.91 -0.02 2.43 16 14 C 0.02 1.17 5.15 84.65 0.44 1.61 16 15 N -0.91 -49.88 9.35 21.45 0.20 -49.68 16 16 Si 0.95 42.03 29.54 68.60 2.03 44.06 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 C 0.10 4.13 6.13 22.51 0.14 4.26 16 21 O -0.49 -19.62 9.94 -92.41 -0.92 -20.54 16 22 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.14 3.98 7.01 -2.91 -0.02 3.96 16 28 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 29 H 0.13 4.63 5.90 -2.91 -0.02 4.61 16 30 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 3.27 6.04 -2.38 -0.01 3.25 16 32 H 0.04 1.84 6.40 -2.39 -0.02 1.83 16 33 H 0.03 1.29 7.67 -2.39 -0.02 1.28 16 34 H 0.06 3.15 6.10 -2.38 -0.01 3.14 16 35 H 0.03 1.15 7.36 -2.39 -0.02 1.13 16 36 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 37 H 0.39 13.74 8.03 -74.06 -0.60 13.15 16 Total: -1.00 -59.58 295.07 4.30 -55.28 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.48 Total: 23.24 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: 3.88 Total: -40.40 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.20 Total: -49.68 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -2.29 Total: -32.49 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -59.58 4.30 -55.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260268724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.387 kcal (2) G-P(sol) polarization free energy of solvation -59.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds