Wall clock time and date at job start Mon Mar 30 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46984 * 2 1 4 4 C 1.38714 * 120.00267 * 270.01971 * 3 2 1 5 5 O 1.35990 * 119.99439 * 359.97438 * 4 3 2 6 6 C 1.42903 * 116.99404 * 180.02562 * 5 4 3 7 7 C 1.38672 * 120.00480 * 180.02562 * 4 3 2 8 8 C 1.38152 * 119.99931 * 359.97403 * 7 4 3 9 9 C 1.38679 * 119.99744 * 359.70596 * 8 7 4 10 10 O 1.35991 * 120.00108 * 180.31716 * 9 8 7 11 11 C 1.42900 * 116.99990 * 0.27931 * 10 9 8 12 12 C 1.38109 * 119.99927 * 89.99967 * 3 2 1 13 13 C 1.50700 * 120.00234 * 359.97438 * 12 3 2 14 14 C 1.50702 * 109.46869 * 90.00151 * 13 12 3 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.09000 * 109.47102 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47378 * 300.00318 * 1 2 3 24 24 H 1.09001 * 109.47114 * 60.00079 * 1 2 3 25 25 H 1.08996 * 109.47378 * 239.99682 * 2 1 3 26 26 H 1.09003 * 109.46617 * 119.99788 * 2 1 3 27 27 H 1.08991 * 109.47188 * 60.00505 * 6 5 4 28 28 H 1.08999 * 109.46709 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.46804 * 300.00008 * 6 5 4 30 30 H 1.08003 * 120.00065 * 179.97438 * 7 4 3 31 31 H 1.07997 * 120.00374 * 180.02562 * 8 7 4 32 32 H 1.08998 * 109.47012 * 179.97438 * 11 10 9 33 33 H 1.08999 * 109.46873 * 300.00002 * 11 10 9 34 34 H 1.09001 * 109.47291 * 59.99210 * 11 10 9 35 35 H 1.09004 * 109.47210 * 330.00444 * 13 12 3 36 36 H 1.08994 * 109.47551 * 210.00096 * 13 12 3 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2631 2.0749 -1.2013 5 8 2.0366 1.4338 -2.3789 6 6 2.2961 2.1676 -3.5774 7 6 2.7258 3.3822 -1.2013 8 6 2.9564 4.0333 -0.0049 9 6 2.7194 3.3817 1.1961 10 8 2.9402 4.0248 2.3738 11 6 3.4105 5.3721 2.2990 12 6 2.2625 2.0719 1.1961 13 6 2.0108 1.3617 2.5012 14 6 3.2663 0.6509 2.9365 15 1 4.1575 0.7081 2.3291 16 6 3.2791 -0.0673 4.1135 17 7 2.1940 -0.1366 4.8533 18 14 4.8376 -0.9419 4.6569 19 1 5.9101 -0.7096 3.6565 20 1 5.2683 -0.4122 5.9758 21 1 4.5736 -2.3988 4.7710 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 3.3447 2.4637 -3.6022 28 1 2.0744 1.5417 -4.4418 29 1 1.6666 3.0571 -3.6023 30 1 2.9059 3.8913 -2.1367 31 1 3.3164 5.0516 -0.0049 32 1 3.5446 5.7665 3.3062 33 1 4.3628 5.3957 1.7693 34 1 2.6823 5.9820 1.7643 35 1 1.2086 0.6352 2.3708 36 1 1.7228 2.0884 3.2607 37 1 2.2029 -0.6421 5.6811 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260278206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:19 Heat of formation + Delta-G solvation = -64.212431 kcal Electronic energy + Delta-G solvation = -18797.669557 eV Core-core repulsion = 15926.456426 eV Total energy + Delta-G solvation = -2871.213131 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.05417 -38.43408 -36.34260 -33.63706 -32.69246 -30.62562 -28.68628 -27.45527 -26.59003 -26.34044 -23.55433 -22.65084 -20.68454 -19.76718 -17.10780 -16.92460 -16.47548 -16.20592 -15.42060 -15.00766 -14.48483 -14.29214 -13.90676 -13.80905 -12.96857 -12.65333 -12.37822 -12.35302 -12.18027 -11.66206 -11.52615 -11.29264 -11.17077 -11.14096 -10.87567 -10.68037 -10.42728 -10.17015 -10.06133 -9.87796 -9.40981 -9.27485 -8.31023 -7.83940 -7.04759 -5.93499 -3.95195 1.91937 2.12870 3.35404 3.42742 3.48155 3.68060 3.98551 4.33388 4.55889 5.12944 5.24761 5.28634 5.30997 5.41302 5.45304 5.51746 5.55570 5.69745 5.80383 5.82725 5.94098 6.08812 6.14822 6.39246 6.44553 6.53283 6.69819 6.77218 6.94295 7.01892 7.04895 7.39145 7.71084 7.80799 7.89358 8.03411 8.17591 8.44154 9.08682 9.66549 11.16471 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018433 B = 0.008109 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.673213 B = 3452.128978 C = 4288.701357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C -0.077 4.077 4 C 0.086 3.914 5 O -0.316 6.316 6 C 0.031 3.969 7 C -0.195 4.195 8 C -0.183 4.183 9 C 0.091 3.909 10 O -0.296 6.296 11 C 0.030 3.970 12 C -0.028 4.028 13 C 0.055 3.945 14 C -0.499 4.499 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 7.348 -12.221 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C -0.078 4.078 4 C 0.042 3.958 5 O -0.230 6.230 6 C -0.065 4.065 7 C -0.214 4.214 8 C -0.202 4.202 9 C 0.046 3.954 10 O -0.209 6.209 11 C -0.066 4.066 12 C -0.029 4.029 13 C 0.019 3.981 14 C -0.537 4.537 15 H 0.073 0.927 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.508 7.010 -11.894 13.815 hybrid contribution 1.167 0.242 -0.012 1.192 sum 0.659 7.252 -11.906 13.956 Atomic orbital electron populations 1.21658 0.95610 1.00914 1.01376 1.20383 0.95412 0.92243 1.03456 1.18939 1.03077 0.97033 0.88718 1.18706 1.00395 0.91351 0.85318 1.86063 1.83608 1.41127 1.12213 1.22899 1.00317 0.97241 0.85998 1.20661 1.08138 0.94670 0.97945 1.20824 1.07275 1.00267 0.91844 1.18800 0.99704 0.92661 0.84188 1.86283 1.81291 1.25866 1.27494 1.22917 0.98115 0.82511 1.03090 1.19828 0.95406 0.90391 0.97253 1.18271 0.97730 0.94965 0.87180 1.21015 0.96805 1.29941 1.05941 0.92732 1.24951 0.96109 0.96682 0.96455 1.69969 1.27368 1.41923 1.14125 0.86550 0.83712 0.79325 0.78546 1.19784 1.21075 1.21024 0.93058 0.92423 0.93599 0.91798 0.88646 0.93311 0.89013 0.93352 0.86410 0.86306 0.88904 0.93521 0.93701 0.94569 0.94666 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.76 37.16 0.36 -2.06 16 2 C -0.08 -1.54 5.15 -27.88 -0.14 -1.68 16 3 C -0.08 -1.61 5.14 -104.49 -0.54 -2.15 16 4 C 0.09 1.60 6.66 -39.25 -0.26 1.34 16 5 O -0.32 -5.19 9.54 -19.71 -0.19 -5.37 16 6 C 0.03 0.35 9.81 101.05 0.99 1.34 16 7 C -0.20 -3.28 9.03 -39.45 -0.36 -3.64 16 8 C -0.18 -3.23 9.03 -39.45 -0.36 -3.59 16 9 C 0.09 1.93 6.66 -39.24 -0.26 1.67 16 10 O -0.30 -6.21 9.53 -19.71 -0.19 -6.40 16 11 C 0.03 0.43 9.81 101.05 0.99 1.42 16 12 C -0.03 -0.65 5.08 -104.49 -0.53 -1.18 16 13 C 0.06 1.46 4.20 -29.03 -0.12 1.34 16 14 C -0.50 -14.24 8.69 -34.44 -0.30 -14.54 16 15 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 18 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 1.07 7.40 -51.93 -0.38 0.69 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.18 7.53 -51.93 -0.39 0.78 16 26 H 0.10 2.12 6.36 -51.93 -0.33 1.79 16 27 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 30 H 0.12 1.59 6.29 -52.48 -0.33 1.26 16 31 H 0.12 1.73 6.29 -52.49 -0.33 1.40 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 34 H 0.04 0.56 7.67 -51.93 -0.40 0.17 16 35 H 0.04 0.98 5.85 -51.93 -0.30 0.67 16 36 H 0.04 1.01 7.52 -51.93 -0.39 0.62 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 304.19 15.07 4.58 4.58 Total: -1.00 -31.88 304.19 -5.98 -37.86 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.28 Total: -1.53 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -0.62 Total: -20.12 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.38 Total: -11.77 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.88 -5.98 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260278206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.351 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds