Wall clock time and date at job start Mon Mar 30 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46984 * 2 1 4 4 C 1.38714 * 120.00267 * 270.01971 * 3 2 1 5 5 O 1.35990 * 119.99439 * 359.97438 * 4 3 2 6 6 C 1.42903 * 116.99404 * 180.02562 * 5 4 3 7 7 C 1.38672 * 120.00480 * 180.02562 * 4 3 2 8 8 C 1.38152 * 119.99931 * 359.97403 * 7 4 3 9 9 C 1.38679 * 119.99744 * 359.70596 * 8 7 4 10 10 O 1.35991 * 120.00108 * 180.31716 * 9 8 7 11 11 C 1.42900 * 116.99990 * 0.27931 * 10 9 8 12 12 C 1.38109 * 119.99927 * 89.99967 * 3 2 1 13 13 C 1.50700 * 120.00234 * 359.97438 * 12 3 2 14 14 C 1.50702 * 109.46869 * 90.00151 * 13 12 3 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.09000 * 109.47102 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47378 * 300.00318 * 1 2 3 24 24 H 1.09001 * 109.47114 * 60.00079 * 1 2 3 25 25 H 1.08996 * 109.47378 * 239.99682 * 2 1 3 26 26 H 1.09003 * 109.46617 * 119.99788 * 2 1 3 27 27 H 1.08991 * 109.47188 * 60.00505 * 6 5 4 28 28 H 1.08999 * 109.46709 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.46804 * 300.00008 * 6 5 4 30 30 H 1.08003 * 120.00065 * 179.97438 * 7 4 3 31 31 H 1.07997 * 120.00374 * 180.02562 * 8 7 4 32 32 H 1.08998 * 109.47012 * 179.97438 * 11 10 9 33 33 H 1.08999 * 109.46873 * 300.00002 * 11 10 9 34 34 H 1.09001 * 109.47291 * 59.99210 * 11 10 9 35 35 H 1.09004 * 109.47210 * 330.00444 * 13 12 3 36 36 H 1.08994 * 109.47551 * 210.00096 * 13 12 3 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2631 2.0749 -1.2013 5 8 2.0366 1.4338 -2.3789 6 6 2.2961 2.1676 -3.5774 7 6 2.7258 3.3822 -1.2013 8 6 2.9564 4.0333 -0.0049 9 6 2.7194 3.3817 1.1961 10 8 2.9402 4.0248 2.3738 11 6 3.4105 5.3721 2.2990 12 6 2.2625 2.0719 1.1961 13 6 2.0108 1.3617 2.5012 14 6 3.2663 0.6509 2.9365 15 1 4.1575 0.7081 2.3291 16 6 3.2791 -0.0673 4.1135 17 7 2.1940 -0.1366 4.8533 18 14 4.8376 -0.9419 4.6569 19 1 5.9101 -0.7096 3.6565 20 1 5.2683 -0.4122 5.9758 21 1 4.5736 -2.3988 4.7710 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 3.3447 2.4637 -3.6022 28 1 2.0744 1.5417 -4.4418 29 1 1.6666 3.0571 -3.6023 30 1 2.9059 3.8913 -2.1367 31 1 3.3164 5.0516 -0.0049 32 1 3.5446 5.7665 3.3062 33 1 4.3628 5.3957 1.7693 34 1 2.6823 5.9820 1.7643 35 1 1.2086 0.6352 2.3708 36 1 1.7228 2.0884 3.2607 37 1 2.2029 -0.6421 5.6811 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260278206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:19 Heat of formation + Delta-G solvation = -83.991476 kcal Electronic energy + Delta-G solvation = -18798.527241 eV Core-core repulsion = 15926.456426 eV Total energy + Delta-G solvation = -2872.070815 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.47098 -39.76636 -37.78956 -35.37994 -34.51970 -32.36972 -30.00046 -29.06910 -27.89764 -27.60440 -25.38272 -24.29052 -22.15804 -21.28729 -18.62720 -18.31312 -18.26500 -17.88708 -16.63537 -16.50414 -16.26944 -15.54413 -15.33317 -15.25958 -14.56214 -14.25958 -13.93986 -13.83212 -13.54545 -13.19704 -13.12516 -12.88938 -12.64575 -12.53404 -12.46116 -12.28005 -12.16699 -11.84859 -11.69327 -11.50321 -11.12541 -11.04466 -10.53918 -9.44153 -8.50039 -8.12555 -6.24564 0.43919 0.65526 1.38794 1.38995 1.52456 2.42020 2.51251 2.67650 2.88726 3.16653 3.86856 3.93382 4.21871 4.31896 4.38315 4.40288 4.45649 4.49535 4.53086 4.61653 4.68661 4.73651 4.79858 4.89336 4.93496 5.14581 5.17126 5.26930 5.35575 5.39941 5.46088 5.56509 5.75882 5.82598 6.03084 6.25438 6.54607 6.78553 6.85944 7.41307 8.95901 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018433 B = 0.008109 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.673213 B = 3452.128978 C = 4288.701357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 C -0.095 4.095 4 C 0.087 3.913 5 O -0.330 6.330 6 C 0.019 3.981 7 C -0.180 4.180 8 C -0.172 4.172 9 C 0.071 3.929 10 O -0.338 6.338 11 C 0.020 3.980 12 C -0.070 4.070 13 C 0.073 3.927 14 C -0.511 4.511 15 H 0.044 0.956 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.959 3.041 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.274 1.274 22 H 0.068 0.932 23 H 0.035 0.965 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.015 0.985 36 H -0.004 1.004 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.862 8.546 -14.805 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 C -0.095 4.095 4 C 0.042 3.958 5 O -0.245 6.245 6 C -0.076 4.076 7 C -0.199 4.199 8 C -0.191 4.191 9 C 0.026 3.974 10 O -0.252 6.252 11 C -0.075 4.075 12 C -0.071 4.071 13 C 0.036 3.964 14 C -0.549 4.549 15 H 0.063 0.937 16 C -0.191 4.191 17 N -0.570 5.570 18 Si 0.784 3.216 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.199 1.199 22 H 0.086 0.914 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.136 0.864 29 H 0.082 0.918 30 H 0.179 0.821 31 H 0.174 0.826 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.033 0.967 36 H 0.015 0.985 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.703 8.221 -14.497 16.681 hybrid contribution 0.774 -0.046 0.660 1.018 sum 1.477 8.174 -13.837 16.139 Atomic orbital electron populations 1.21581 0.94153 1.01941 1.01002 1.20300 0.96730 0.92035 1.02063 1.19012 1.03714 0.97383 0.89420 1.18676 0.99780 0.91904 0.85417 1.86046 1.83433 1.42255 1.12726 1.23304 1.01503 0.98288 0.84468 1.21149 1.05519 0.93824 0.99376 1.21187 1.05705 1.01632 0.90558 1.18976 1.00399 0.92362 0.85618 1.86217 1.81863 1.28788 1.28380 1.23257 0.99326 0.80059 1.04821 1.19595 0.99240 0.92062 0.96204 1.17852 0.96311 0.93527 0.88662 1.21239 0.97190 1.30318 1.06141 0.93729 1.25823 0.99488 0.97387 0.96438 1.70091 1.29519 1.42789 1.14619 0.85489 0.79569 0.78394 0.78169 1.19273 1.20264 1.19926 0.91351 0.94602 0.91956 0.90492 0.92415 0.92075 0.86421 0.91755 0.82093 0.82607 0.87528 0.91911 0.91397 0.96659 0.98535 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 9.76 71.98 0.70 -3.94 16 2 C -0.07 -3.02 5.15 29.85 0.15 -2.87 16 3 C -0.09 -4.02 5.14 -19.78 -0.10 -4.12 16 4 C 0.09 3.05 6.66 22.49 0.15 3.20 16 5 O -0.33 -9.87 9.54 -93.44 -0.89 -10.77 16 6 C 0.02 0.34 9.81 113.37 1.11 1.45 16 7 C -0.18 -5.39 9.03 22.35 0.20 -5.19 16 8 C -0.17 -5.61 9.03 22.35 0.20 -5.40 16 9 C 0.07 3.03 6.66 22.49 0.15 3.18 16 10 O -0.34 -14.49 9.53 -93.45 -0.89 -15.38 16 11 C 0.02 0.55 9.81 113.37 1.11 1.66 16 12 C -0.07 -3.38 5.08 -19.78 -0.10 -3.49 16 13 C 0.07 4.18 4.20 29.10 0.12 4.30 16 14 C -0.51 -30.71 8.69 25.60 0.22 -30.48 16 15 H 0.04 2.69 7.74 -2.91 -0.02 2.67 16 16 C 0.01 0.37 5.46 84.66 0.46 0.83 16 17 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 18 Si 0.96 46.19 29.54 68.60 2.03 48.21 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 22 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.03 1.41 7.40 -2.39 -0.02 1.39 16 24 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.08 2.85 7.53 -2.39 -0.02 2.83 16 26 H 0.06 2.75 6.36 -2.39 -0.02 2.74 16 27 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 28 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 30 H 0.16 3.39 6.29 -2.91 -0.02 3.37 16 31 H 0.16 3.82 6.29 -2.91 -0.02 3.80 16 32 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.06 1.51 7.65 -2.39 -0.02 1.49 16 34 H 0.07 1.54 7.67 -2.39 -0.02 1.52 16 35 H 0.02 0.90 5.85 -2.38 -0.01 0.89 16 36 H 0.00 -0.23 7.52 -2.39 -0.02 -0.25 16 37 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -73.32 304.19 5.98 -67.34 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.06 Total: 9.07 kcal Atomic # 6 Polarization: -45.25 SS G_CDS: 4.39 Total: -40.86 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.28 Total: -57.63 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -1.78 Total: -26.14 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -73.32 5.98 -67.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260278206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.647 kcal (2) G-P(sol) polarization free energy of solvation -73.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds