Wall clock time and date at job start Mon Mar 30 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 C 1.50694 * 109.47502 * 120.00599 * 2 1 3 5 5 C 1.34769 * 125.76152 * 120.01886 * 4 2 1 6 6 C 1.40651 * 106.64016 * 180.02562 * 5 4 2 7 7 C 1.34892 * 107.15949 * 359.95618 * 6 5 4 8 8 O 1.33834 * 108.29860 * 0.07258 * 7 6 5 9 9 C 1.50929 * 123.89766 * 180.16898 * 7 6 5 10 10 O 1.42890 * 109.67479 * 256.91890 * 9 7 6 11 11 C 1.50700 * 109.70076 * 136.40089 * 9 7 6 12 12 H 1.07995 * 120.00546 * 241.01338 * 11 9 7 13 13 C 1.37880 * 119.99555 * 61.01457 * 11 9 7 14 14 N 1.31510 * 120.00303 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99929 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47298 * 59.99954 * 15 13 11 17 17 H 1.48494 * 109.47308 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47133 * 300.00182 * 15 13 11 19 19 C 1.53343 * 108.42871 * 16.65286 * 9 7 6 20 20 C 1.53115 * 109.53339 * 309.97121 * 19 9 7 21 21 C 1.50639 * 128.27951 * 179.87595 * 6 5 4 22 22 H 1.08998 * 109.47609 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47153 * 299.99776 * 1 2 3 24 24 H 1.09001 * 109.47510 * 59.99440 * 1 2 3 25 25 H 1.09000 * 109.46906 * 240.00688 * 2 1 3 26 26 H 1.09004 * 109.47387 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47920 * 300.00303 * 3 2 1 28 28 H 1.09000 * 109.47203 * 60.00875 * 3 2 1 29 29 H 1.08000 * 126.67768 * 0.03252 * 5 4 2 30 30 H 0.96701 * 113.99991 * 298.96853 * 10 9 7 31 31 H 0.97006 * 120.00132 * 179.97438 * 14 13 11 32 32 H 1.08996 * 109.45834 * 189.94487 * 19 9 7 33 33 H 1.09000 * 109.45670 * 69.98859 * 19 9 7 34 34 H 1.09005 * 109.48055 * 310.02413 * 20 19 9 35 35 H 1.09000 * 109.49217 * 189.99694 * 20 19 9 36 36 H 1.09000 * 109.67946 * 316.13840 * 21 6 5 37 37 H 1.08996 * 109.68170 * 76.68883 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 2.8108 -1.8106 1.2418 6 6 3.0360 -2.1305 2.5928 7 6 2.3853 -1.2099 3.3336 8 8 1.7790 -0.3539 2.5024 9 6 2.3788 -1.1955 4.8428 10 8 1.1315 -1.7004 5.3234 11 6 2.5807 0.2133 5.3383 12 1 3.4388 0.4535 5.9484 13 6 1.6697 1.1957 5.0126 14 7 0.6250 0.9034 4.2692 15 14 1.9194 2.9419 5.6272 16 1 3.2110 3.4667 5.1160 17 1 0.8097 3.8010 5.1418 18 1 1.9362 2.9463 7.1122 19 6 3.5229 -2.0868 5.3410 20 6 3.4584 -3.4444 4.6360 21 6 3.8396 -3.2713 3.1603 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9565 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 3.1882 -2.3429 0.3812 30 1 0.3639 -1.1825 5.0447 31 1 -0.0161 1.5945 4.0403 32 1 3.4283 -2.2314 6.4172 33 1 4.4776 -1.6086 5.1216 34 1 2.4461 -3.8425 4.7057 35 1 4.1541 -4.1351 5.1125 36 1 3.6146 -4.1867 2.6131 37 1 4.9032 -3.0469 3.0798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260285542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:11 Heat of formation + Delta-G solvation = -72.838504 kcal Electronic energy + Delta-G solvation = -19649.599106 eV Core-core repulsion = 16778.011920 eV Total energy + Delta-G solvation = -2871.587186 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.18581 -38.83170 -36.21741 -36.09425 -34.14068 -32.73327 -30.36294 -29.06855 -28.04056 -26.95601 -23.83399 -23.32789 -21.90478 -21.19842 -19.27525 -18.80334 -17.93503 -16.83647 -16.50127 -16.14157 -15.75532 -15.32860 -15.12565 -14.54094 -14.34392 -13.93773 -13.69708 -13.59574 -13.42857 -13.37619 -13.03292 -12.86968 -12.68562 -12.45542 -12.29638 -12.09821 -11.97883 -11.87960 -11.80594 -11.51474 -11.21259 -10.60541 -10.28943 -10.08576 -8.72737 -8.19622 -6.38350 1.25388 1.38022 1.39652 1.46044 1.95583 2.36653 2.56912 3.06628 3.77412 3.97554 4.04423 4.21014 4.24582 4.26237 4.29257 4.37952 4.61656 4.74377 4.76252 4.77532 4.88637 4.92566 4.93902 5.00398 5.03550 5.12092 5.18965 5.33159 5.37788 5.42687 5.51348 5.57920 5.71124 5.81345 5.99569 6.11499 6.61402 6.95295 7.25932 7.36323 8.81865 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.013377 C = 0.008146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.350652 B = 2092.600582 C = 3436.271535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.005 4.005 3 C -0.140 4.140 4 C -0.064 4.064 5 C -0.222 4.222 6 C -0.239 4.239 7 C -0.002 4.002 8 O -0.123 6.123 9 C 0.306 3.694 10 O -0.588 6.588 11 C -0.580 4.580 12 H 0.058 0.942 13 C 0.038 3.962 14 N -0.877 5.877 15 Si 0.954 3.046 16 H -0.277 1.277 17 H -0.279 1.279 18 H -0.270 1.270 19 C -0.090 4.090 20 C -0.112 4.112 21 C -0.036 4.036 22 H 0.051 0.949 23 H 0.034 0.966 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.029 0.971 29 H 0.159 0.841 30 H 0.374 0.626 31 H 0.268 0.732 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -3.095 -8.055 9.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 C -0.197 4.197 4 C -0.116 4.116 5 C -0.241 4.241 6 C -0.241 4.241 7 C -0.056 4.056 8 O -0.016 6.016 9 C 0.267 3.733 10 O -0.397 6.397 11 C -0.617 4.617 12 H 0.076 0.924 13 C -0.166 4.166 14 N -0.514 5.514 15 Si 0.779 3.221 16 H -0.203 1.203 17 H -0.204 1.204 18 H -0.195 1.195 19 C -0.128 4.128 20 C -0.149 4.149 21 C -0.073 4.073 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.106 0.894 25 H 0.135 0.865 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.177 0.823 30 H 0.224 0.776 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.813 -3.218 -7.773 8.871 hybrid contribution -0.370 1.442 0.191 1.501 sum 2.443 -1.776 -7.582 8.162 Atomic orbital electron populations 1.21765 0.93818 1.01835 1.02127 1.19758 0.96371 0.95626 0.90552 1.21783 1.00849 0.95066 1.02003 1.23328 1.03222 0.98858 0.86179 1.21338 1.05639 1.00052 0.97023 1.20599 1.08123 1.01956 0.93388 1.24208 0.96496 0.89525 0.95353 1.84379 1.57008 1.45986 1.14204 1.17515 0.82983 0.92166 0.80683 1.86154 1.18068 1.57927 1.77535 1.21854 1.10372 0.94929 1.34572 0.92412 1.25651 0.94770 1.02377 0.93792 1.69682 1.11967 1.35112 1.34628 0.85687 0.77695 0.79806 0.78893 1.20255 1.20436 1.19545 1.21464 0.96161 0.95229 0.99920 1.21585 1.01586 0.96577 0.95199 1.19996 0.97888 0.94563 0.94866 0.92941 0.94721 0.89375 0.86535 0.92974 0.89194 0.95142 0.82332 0.77602 0.92226 0.91598 0.91465 0.93255 0.89036 0.90064 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.18 71.98 0.66 -3.52 16 2 C 0.00 -0.16 3.32 -11.54 -0.04 -0.19 16 3 C -0.14 -4.28 9.18 71.98 0.66 -3.62 16 4 C -0.06 -2.70 5.84 24.89 0.15 -2.56 16 5 C -0.22 -8.84 10.77 22.06 0.24 -8.60 16 6 C -0.24 -10.52 5.95 -20.06 -0.12 -10.64 16 7 C 0.00 -0.11 5.91 24.99 0.15 0.03 16 8 O -0.12 -6.37 7.91 -0.22 0.00 -6.38 16 9 C 0.31 15.99 0.78 -12.10 -0.01 15.98 16 10 O -0.59 -32.23 12.59 -148.98 -1.88 -34.11 16 11 C -0.58 -32.44 8.23 25.60 0.21 -32.22 16 12 H 0.06 3.19 7.75 -2.91 -0.02 3.17 16 13 C 0.04 2.06 5.06 84.66 0.43 2.49 16 14 N -0.88 -48.21 9.04 21.45 0.19 -48.02 16 15 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 C -0.09 -3.93 4.84 30.75 0.15 -3.78 16 20 C -0.11 -4.08 5.90 30.77 0.18 -3.90 16 21 C -0.04 -1.27 6.29 29.96 0.19 -1.09 16 22 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.12 2.92 8.10 -2.39 -0.02 2.90 16 26 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.16 5.09 8.06 -2.91 -0.02 5.07 16 30 H 0.37 21.28 7.12 -74.06 -0.53 20.76 16 31 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 32 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.07 2.84 8.08 -2.39 -0.02 2.82 16 34 H 0.05 1.96 7.78 -2.38 -0.02 1.94 16 35 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -63.43 298.25 3.71 -59.72 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.53 Total: 34.86 kcal Atomic # 6 Polarization: -54.46 SS G_CDS: 2.84 Total: -51.62 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.19 Total: -48.02 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.88 Total: -40.48 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -63.43 3.71 -59.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260285542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.123 kcal (2) G-P(sol) polarization free energy of solvation -63.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds