Wall clock time and date at job start Mon Mar 30 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47163 * 2 1 4 4 C 1.50700 * 109.47114 * 120.00356 * 2 1 3 5 5 C 1.34774 * 125.75748 * 119.99888 * 4 2 1 6 6 C 1.40643 * 106.63723 * 179.97438 * 5 4 2 7 7 C 1.34894 * 107.16207 * 0.05188 * 6 5 4 8 8 O 1.33832 * 108.29783 * 359.93028 * 7 6 5 9 9 C 1.50931 * 123.90152 * 179.84198 * 7 6 5 10 10 O 1.42903 * 109.67271 * 103.09278 * 9 7 6 11 11 C 1.50694 * 109.67364 * 223.58945 * 9 7 6 12 12 H 1.08003 * 120.00314 * 119.99915 * 11 9 7 13 13 C 1.37878 * 120.00061 * 300.00653 * 11 9 7 14 14 N 1.31512 * 119.99818 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00154 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47419 * 59.99500 * 15 13 11 17 17 H 1.48500 * 109.47511 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47094 * 299.99526 * 15 13 11 19 19 C 1.53330 * 108.42600 * 343.32492 * 9 7 6 20 20 C 1.53123 * 109.53653 * 50.04149 * 19 9 7 21 21 C 1.50642 * 128.28277 * 180.12373 * 6 5 4 22 22 H 1.09001 * 109.47266 * 60.00073 * 1 2 3 23 23 H 1.09003 * 109.46804 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46978 * 299.99354 * 1 2 3 25 25 H 1.09004 * 109.47194 * 240.00244 * 2 1 3 26 26 H 1.09007 * 109.47171 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47422 * 299.99825 * 3 2 1 28 28 H 1.08998 * 109.47101 * 60.00721 * 3 2 1 29 29 H 1.08000 * 126.68125 * 359.72715 * 5 4 2 30 30 H 0.96699 * 113.99506 * 60.00193 * 10 9 7 31 31 H 0.97009 * 119.99663 * 180.02562 * 14 13 11 32 32 H 1.09007 * 109.46052 * 170.06342 * 19 9 7 33 33 H 1.09001 * 109.46531 * 290.02257 * 19 9 7 34 34 H 1.09000 * 109.48067 * 49.97547 * 20 19 9 35 35 H 1.08998 * 109.48160 * 170.00417 * 20 19 9 36 36 H 1.09002 * 109.67908 * 43.87567 * 21 6 5 37 37 H 1.08995 * 109.71468 * 283.34208 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8104 -1.8109 1.2419 6 6 3.0367 -2.1299 2.5929 7 6 2.3851 -1.2099 3.3337 8 8 1.7800 -0.3532 2.5025 9 6 2.3735 -1.1990 4.8429 10 8 3.2646 -0.1906 5.3236 11 6 0.9776 -0.9202 5.3375 12 1 0.4713 -1.6422 5.9610 13 6 0.3467 0.2567 4.9939 14 7 0.9634 1.1360 4.2350 15 14 -1.3833 0.6027 5.6076 16 1 -1.3891 0.6127 7.0926 17 1 -1.8326 1.9248 5.1024 18 1 -2.3034 -0.4542 5.1162 19 6 2.8325 -2.5746 5.3410 20 6 4.1344 -2.9661 4.6364 21 6 3.8446 -3.2677 3.1605 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1838 -2.3461 0.3814 30 1 3.0406 0.7037 5.0319 31 1 0.5197 1.9642 3.9936 32 1 3.0002 -2.5337 6.4174 33 1 2.0638 -3.3155 5.1214 34 1 4.8470 -2.1443 4.7064 35 1 4.5535 -3.8522 5.1131 36 1 4.7829 -3.3602 2.6136 37 1 3.2795 -4.1961 3.0796 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260285545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:13 Heat of formation + Delta-G solvation = -72.001507 kcal Electronic energy + Delta-G solvation = -19658.068395 eV Core-core repulsion = 16786.517504 eV Total energy + Delta-G solvation = -2871.550891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.17706 -38.82733 -36.21175 -36.08922 -34.15154 -32.72331 -30.35871 -29.06312 -28.03806 -26.95122 -23.83034 -23.32615 -21.90134 -21.19353 -19.26547 -18.79835 -17.93900 -16.82616 -16.49224 -16.14165 -15.75380 -15.32524 -15.12405 -14.54341 -14.33843 -13.93448 -13.69510 -13.59765 -13.42382 -13.36832 -13.03046 -12.86455 -12.68014 -12.46129 -12.29547 -12.09564 -11.97547 -11.87676 -11.80426 -11.51612 -11.20875 -10.60384 -10.28339 -10.07867 -8.72154 -8.19138 -6.37907 1.26102 1.38038 1.39869 1.46062 1.95968 2.36793 2.57837 3.06933 3.77806 3.97296 4.04600 4.21080 4.24850 4.26345 4.29277 4.38157 4.61905 4.74526 4.76510 4.77699 4.88759 4.92698 4.94144 5.00531 5.03689 5.12289 5.18940 5.33378 5.38106 5.42834 5.51401 5.58377 5.70935 5.82137 6.00023 6.12016 6.61912 6.96194 7.25197 7.36230 8.82106 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.013435 C = 0.008161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.978159 B = 2083.534423 C = 3430.147940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.005 4.005 3 C -0.138 4.138 4 C -0.065 4.065 5 C -0.222 4.222 6 C -0.239 4.239 7 C -0.002 4.002 8 O -0.121 6.121 9 C 0.306 3.694 10 O -0.588 6.588 11 C -0.580 4.580 12 H 0.057 0.943 13 C 0.038 3.962 14 N -0.875 5.875 15 Si 0.953 3.047 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.277 1.277 19 C -0.090 4.090 20 C -0.112 4.112 21 C -0.036 4.036 22 H 0.089 0.911 23 H 0.051 0.949 24 H 0.029 0.971 25 H 0.116 0.884 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.034 0.966 29 H 0.159 0.841 30 H 0.374 0.626 31 H 0.268 0.732 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 -3.594 -8.018 9.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 C -0.195 4.195 4 C -0.117 4.117 5 C -0.241 4.241 6 C -0.241 4.241 7 C -0.056 4.056 8 O -0.013 6.013 9 C 0.267 3.733 10 O -0.396 6.396 11 C -0.617 4.617 12 H 0.076 0.924 13 C -0.166 4.166 14 N -0.512 5.512 15 Si 0.779 3.221 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.203 1.203 19 C -0.128 4.128 20 C -0.149 4.149 21 C -0.073 4.073 22 H 0.108 0.892 23 H 0.070 0.930 24 H 0.049 0.951 25 H 0.134 0.866 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.053 0.947 29 H 0.176 0.824 30 H 0.223 0.777 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.119 -3.671 -7.729 8.815 hybrid contribution -1.234 0.818 0.179 1.491 sum 0.885 -2.853 -7.550 8.119 Atomic orbital electron populations 1.21781 0.94150 1.01757 1.01998 1.19756 0.96075 0.95916 0.90554 1.21764 1.00836 0.94803 1.02129 1.23340 1.03191 0.98845 0.86279 1.21333 1.05796 0.99978 0.97011 1.20595 1.07363 1.02742 0.93391 1.24200 0.95362 0.90720 0.95329 1.84417 1.56980 1.45766 1.14103 1.17512 0.88201 0.86909 0.80717 1.86164 1.56475 1.20193 1.76780 1.21850 1.01214 1.04887 1.33783 0.92441 1.25648 1.01341 0.95794 0.93827 1.69700 1.38923 1.08707 1.33840 0.85693 0.80218 0.77335 0.78870 1.19585 1.20440 1.20251 1.21463 0.97638 0.93761 0.99913 1.21586 0.96738 1.01424 0.95192 1.19995 0.98172 0.94282 0.94868 0.89213 0.93001 0.95124 0.86584 0.92950 0.89399 0.94686 0.82386 0.77710 0.92250 0.91607 0.91471 0.93242 0.89047 0.90088 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 9.18 71.98 0.66 -3.62 16 2 C 0.00 -0.15 3.32 -11.54 -0.04 -0.19 16 3 C -0.14 -4.18 9.18 71.98 0.66 -3.52 16 4 C -0.06 -2.73 5.84 24.89 0.15 -2.59 16 5 C -0.22 -8.88 10.77 22.06 0.24 -8.64 16 6 C -0.24 -10.54 5.95 -20.06 -0.12 -10.66 16 7 C 0.00 -0.13 5.89 24.99 0.15 0.02 16 8 O -0.12 -6.22 7.80 -0.15 0.00 -6.22 16 9 C 0.31 15.97 0.78 -12.10 -0.01 15.96 16 10 O -0.59 -32.12 12.59 -148.98 -1.88 -33.99 16 11 C -0.58 -32.42 8.24 25.60 0.21 -32.21 16 12 H 0.06 3.17 7.75 -2.91 -0.02 3.15 16 13 C 0.04 2.05 5.06 84.66 0.43 2.48 16 14 N -0.87 -48.00 8.99 21.45 0.19 -47.81 16 15 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 C -0.09 -3.93 4.84 30.75 0.15 -3.78 16 20 C -0.11 -4.07 5.90 30.77 0.18 -3.89 16 21 C -0.04 -1.28 6.29 29.96 0.19 -1.09 16 22 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.12 2.91 8.10 -2.38 -0.02 2.90 16 26 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.16 5.09 8.06 -2.91 -0.02 5.07 16 30 H 0.37 21.16 7.21 -74.06 -0.53 20.62 16 31 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 32 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 33 H 0.07 2.84 8.08 -2.39 -0.02 2.82 16 34 H 0.05 1.96 7.78 -2.39 -0.02 1.94 16 35 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -63.27 298.19 3.70 -59.57 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.52 Total: 34.66 kcal Atomic # 6 Polarization: -54.56 SS G_CDS: 2.84 Total: -51.72 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.19 Total: -47.81 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.88 Total: -40.21 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -63.27 3.70 -59.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260285545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.432 kcal (2) G-P(sol) polarization free energy of solvation -63.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds