Wall clock time and date at job start Mon Mar 30 2020 06:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00173 * 2 1 4 4 O 1.42896 * 109.47128 * 85.76214 * 3 2 1 5 5 C 1.42898 * 114.00021 * 286.14894 * 4 3 2 6 6 C 1.50706 * 109.46942 * 205.75745 * 3 2 1 7 7 C 1.38250 * 120.00497 * 345.21200 * 6 3 2 8 8 C 1.38210 * 120.00279 * 180.22947 * 7 6 3 9 9 C 1.38264 * 119.99727 * 359.81473 * 8 7 6 10 10 C 1.38208 * 120.00204 * 359.97380 * 9 8 7 11 11 C 1.38220 * 119.99443 * 164.99914 * 6 3 2 12 12 C 1.50696 * 120.00209 * 0.02562 * 11 6 3 13 13 H 1.08999 * 109.47436 * 359.73054 * 12 11 6 14 14 C 1.53001 * 109.47087 * 119.72766 * 12 11 6 15 15 C 1.50696 * 109.47267 * 239.72150 * 12 11 6 16 16 H 1.07998 * 119.99905 * 0.02562 * 15 12 11 17 17 C 1.37883 * 120.00200 * 180.27067 * 15 12 11 18 18 N 1.31512 * 120.00031 * 179.72459 * 17 15 12 19 19 Si 1.86797 * 119.99883 * 359.73415 * 17 15 12 20 20 H 1.48499 * 109.47370 * 89.99323 * 19 17 15 21 21 H 1.48501 * 109.47188 * 209.99512 * 19 17 15 22 22 H 1.48505 * 109.47038 * 329.99591 * 19 17 15 23 23 H 1.08996 * 109.47051 * 186.53174 * 1 2 3 24 24 H 1.08996 * 109.46966 * 306.53371 * 1 2 3 25 25 H 1.09005 * 109.46942 * 66.53482 * 1 2 3 26 26 H 1.08997 * 109.47617 * 325.75966 * 3 2 1 27 27 H 1.09006 * 109.47168 * 76.31332 * 5 4 3 28 28 H 1.08994 * 109.47626 * 196.31571 * 5 4 3 29 29 H 1.08998 * 109.47012 * 316.31866 * 5 4 3 30 30 H 1.08007 * 119.99913 * 0.06380 * 7 6 3 31 31 H 1.07993 * 120.00491 * 179.83434 * 8 7 6 32 32 H 1.08001 * 119.99812 * 180.02562 * 9 8 7 33 33 H 1.07996 * 120.00085 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47613 * 59.99614 * 14 12 11 35 35 H 1.09003 * 109.47283 * 180.02562 * 14 12 11 36 36 H 1.09001 * 109.47220 * 299.99584 * 14 12 11 37 37 H 0.96993 * 120.00120 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 2.1130 1.7811 1.3436 5 6 0.8650 2.1741 1.9181 6 6 3.3836 1.2438 -0.6175 7 6 4.0084 0.0231 -0.7932 8 6 5.2699 -0.0330 -1.3551 9 6 5.9054 1.1314 -1.7450 10 6 5.2790 2.3513 -1.5734 11 6 4.0166 2.4074 -1.0121 12 6 3.3338 3.7376 -0.8245 13 1 2.3548 3.5828 -0.3709 14 6 4.1844 4.6232 0.0882 15 6 3.1668 4.4098 -2.1629 16 1 3.5195 3.9222 -3.0597 17 6 2.5684 5.6494 -2.2419 18 7 2.4275 6.2384 -3.4093 19 14 1.9579 6.4924 -0.6908 20 1 3.0448 7.3286 -0.1212 21 1 0.7929 7.3522 -1.0205 22 1 1.5505 5.4664 0.3026 23 1 -0.3633 -1.0210 0.1169 24 1 -0.3633 0.6117 0.8257 25 1 -0.3633 0.4092 -0.9427 26 1 1.3820 1.9830 -0.5782 27 1 0.2976 1.2861 2.1968 28 1 1.0482 2.7812 2.8045 29 1 0.2972 2.7547 1.1911 30 1 3.5119 -0.8865 -0.4888 31 1 5.7591 -0.9863 -1.4899 32 1 6.8910 1.0875 -2.1845 33 1 5.7752 3.2608 -1.8784 34 1 5.1634 4.7781 -0.3652 35 1 3.6903 5.5852 0.2244 36 1 4.3052 4.1371 1.0564 37 1 2.0062 7.1103 -3.4650 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260290175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:33 Heat of formation + Delta-G solvation = -62.101837 kcal Electronic energy + Delta-G solvation = -19171.063904 eV Core-core repulsion = 16299.942295 eV Total energy + Delta-G solvation = -2871.121609 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.67271 -38.03470 -35.78523 -34.51219 -31.80748 -31.21650 -28.89934 -27.59680 -25.89700 -25.06681 -24.47228 -22.77915 -20.91907 -19.46137 -17.14794 -16.97332 -16.62484 -16.39877 -15.25037 -14.66427 -14.38021 -14.23082 -13.93378 -13.48482 -13.35161 -12.97199 -12.79228 -12.44603 -12.35118 -12.08165 -11.75322 -11.43335 -11.28511 -11.02606 -10.84663 -10.56055 -10.12289 -9.91832 -9.76310 -9.64232 -9.35442 -9.14062 -8.61518 -8.24825 -7.88290 -6.12204 -4.11952 1.85280 2.10139 3.22929 3.32595 3.35190 3.71852 4.07272 4.35455 4.57804 5.04154 5.19971 5.26600 5.32526 5.42408 5.45810 5.49412 5.55941 5.64108 5.64672 5.73911 5.85436 6.02942 6.25019 6.35552 6.41543 6.55908 6.69347 6.75681 6.92614 6.97082 7.05670 7.17924 7.30538 7.34837 7.55090 7.62735 7.71810 8.46735 8.92437 9.48869 11.00479 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.010098 C = 0.007551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.109857 B = 2772.086298 C = 3707.267071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.393 6.393 3 C 0.290 3.710 4 O -0.379 6.379 5 C 0.022 3.978 6 C -0.099 4.099 7 C -0.085 4.085 8 C -0.152 4.152 9 C -0.113 4.113 10 C -0.113 4.113 11 C -0.002 4.002 12 C 0.036 3.964 13 H 0.034 0.966 14 C -0.141 4.141 15 C -0.510 4.510 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.885 3.115 20 H -0.278 1.278 21 H -0.298 1.298 22 H -0.267 1.267 23 H 0.085 0.915 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.034 0.966 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 -9.966 7.835 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.314 6.314 3 C 0.196 3.804 4 O -0.299 6.299 5 C -0.074 4.074 6 C -0.100 4.100 7 C -0.103 4.103 8 C -0.170 4.170 9 C -0.132 4.132 10 C -0.131 4.131 11 C -0.002 4.002 12 C 0.018 3.982 13 H 0.052 0.948 14 C -0.198 4.198 15 C -0.548 4.548 16 H 0.095 0.905 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.226 1.226 22 H -0.192 1.192 23 H 0.103 0.897 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.145 0.855 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.958 -9.955 7.825 12.698 hybrid contribution -0.893 0.834 0.614 1.368 sum -1.851 -9.120 8.439 12.563 Atomic orbital electron populations 1.23047 0.81410 1.02836 1.00642 1.87941 1.19473 1.30067 1.93909 1.21843 0.93248 0.82190 0.83138 1.88126 1.29978 1.82191 1.29634 1.22953 0.86902 0.98727 0.98865 1.19007 0.94047 0.94010 1.02889 1.20829 0.94375 0.97157 0.97957 1.20918 0.95712 0.97859 1.02544 1.21151 0.99500 0.92863 0.99642 1.21024 0.95072 0.97688 0.99336 1.19973 0.93340 0.94886 0.91986 1.18381 0.94191 0.88923 0.96731 0.94768 1.22104 1.00615 0.98860 0.98202 1.20987 1.39414 1.02684 0.91715 0.90457 1.24984 0.95274 0.96981 0.95779 1.69886 1.43931 1.16030 1.23691 0.86884 0.77873 0.79716 0.83944 1.20446 1.22578 1.19179 0.89674 0.93448 0.93558 0.90744 0.93746 0.89862 0.93689 0.85944 0.86818 0.86733 0.85465 0.92764 0.94213 0.94662 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.68 101.05 1.08 1.29 16 2 O -0.39 -6.61 9.17 -59.04 -0.54 -7.16 16 3 C 0.29 5.47 2.10 36.01 0.08 5.55 16 4 O -0.38 -7.08 10.19 -59.04 -0.60 -7.68 16 5 C 0.02 0.32 9.76 101.05 0.99 1.30 16 6 C -0.10 -2.00 5.49 -104.62 -0.57 -2.57 16 7 C -0.09 -1.52 9.36 -39.59 -0.37 -1.89 16 8 C -0.15 -2.48 10.05 -39.58 -0.40 -2.87 16 9 C -0.11 -1.92 10.05 -39.58 -0.40 -2.32 16 10 C -0.11 -2.25 8.71 -39.58 -0.34 -2.59 16 11 C 0.00 -0.04 4.74 -104.62 -0.50 -0.53 16 12 C 0.04 0.86 1.85 -92.93 -0.17 0.69 16 13 H 0.03 0.83 4.60 -51.93 -0.24 0.59 16 14 C -0.14 -3.12 8.48 37.16 0.32 -2.80 16 15 C -0.51 -14.03 8.83 -34.44 -0.30 -14.34 16 16 H 0.08 2.32 7.85 -52.49 -0.41 1.91 16 17 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 18 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 19 Si 0.89 21.61 24.37 -169.99 -4.14 17.47 16 20 H -0.28 -6.64 6.86 56.52 0.39 -6.25 16 21 H -0.30 -7.28 7.11 56.52 0.40 -6.87 16 22 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 23 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.55 4.80 -51.93 -0.25 0.30 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 1.47 6.42 -51.93 -0.33 1.14 16 27 H 0.04 0.55 6.27 -51.93 -0.33 0.22 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.04 0.65 7.80 -51.93 -0.41 0.24 16 30 H 0.12 2.02 7.13 -52.48 -0.37 1.65 16 31 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.13 2.53 7.58 -52.49 -0.40 2.13 16 34 H 0.05 1.15 7.39 -51.93 -0.38 0.76 16 35 H 0.04 0.90 3.25 -51.93 -0.17 0.74 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 293.80 15.07 4.43 4.43 Total: -1.00 -30.86 293.80 -5.79 -36.65 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.01 Total: 1.62 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -0.70 Total: -19.16 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.77 Total: -26.17 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -1.14 Total: -14.84 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.14 Total: 17.47 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.86 -5.79 -36.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.450 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds