Wall clock time and date at job start Mon Mar 30 2020 06:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00173 * 2 1 4 4 O 1.42896 * 109.47128 * 85.76214 * 3 2 1 5 5 C 1.42898 * 114.00021 * 286.14894 * 4 3 2 6 6 C 1.50706 * 109.46942 * 205.75745 * 3 2 1 7 7 C 1.38250 * 120.00497 * 345.21200 * 6 3 2 8 8 C 1.38210 * 120.00279 * 180.22947 * 7 6 3 9 9 C 1.38264 * 119.99727 * 359.81473 * 8 7 6 10 10 C 1.38208 * 120.00204 * 359.97380 * 9 8 7 11 11 C 1.38220 * 119.99443 * 164.99914 * 6 3 2 12 12 C 1.50696 * 120.00209 * 0.02562 * 11 6 3 13 13 H 1.08999 * 109.47436 * 359.73054 * 12 11 6 14 14 C 1.53001 * 109.47087 * 119.72766 * 12 11 6 15 15 C 1.50696 * 109.47267 * 239.72150 * 12 11 6 16 16 H 1.07998 * 119.99905 * 0.02562 * 15 12 11 17 17 C 1.37883 * 120.00200 * 180.27067 * 15 12 11 18 18 N 1.31512 * 120.00031 * 179.72459 * 17 15 12 19 19 Si 1.86797 * 119.99883 * 359.73415 * 17 15 12 20 20 H 1.48499 * 109.47370 * 89.99323 * 19 17 15 21 21 H 1.48501 * 109.47188 * 209.99512 * 19 17 15 22 22 H 1.48505 * 109.47038 * 329.99591 * 19 17 15 23 23 H 1.08996 * 109.47051 * 186.53174 * 1 2 3 24 24 H 1.08996 * 109.46966 * 306.53371 * 1 2 3 25 25 H 1.09005 * 109.46942 * 66.53482 * 1 2 3 26 26 H 1.08997 * 109.47617 * 325.75966 * 3 2 1 27 27 H 1.09006 * 109.47168 * 76.31332 * 5 4 3 28 28 H 1.08994 * 109.47626 * 196.31571 * 5 4 3 29 29 H 1.08998 * 109.47012 * 316.31866 * 5 4 3 30 30 H 1.08007 * 119.99913 * 0.06380 * 7 6 3 31 31 H 1.07993 * 120.00491 * 179.83434 * 8 7 6 32 32 H 1.08001 * 119.99812 * 180.02562 * 9 8 7 33 33 H 1.07996 * 120.00085 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47613 * 59.99614 * 14 12 11 35 35 H 1.09003 * 109.47283 * 180.02562 * 14 12 11 36 36 H 1.09001 * 109.47220 * 299.99584 * 14 12 11 37 37 H 0.96993 * 120.00120 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 2.1130 1.7811 1.3436 5 6 0.8650 2.1741 1.9181 6 6 3.3836 1.2438 -0.6175 7 6 4.0084 0.0231 -0.7932 8 6 5.2699 -0.0330 -1.3551 9 6 5.9054 1.1314 -1.7450 10 6 5.2790 2.3513 -1.5734 11 6 4.0166 2.4074 -1.0121 12 6 3.3338 3.7376 -0.8245 13 1 2.3548 3.5828 -0.3709 14 6 4.1844 4.6232 0.0882 15 6 3.1668 4.4098 -2.1629 16 1 3.5195 3.9222 -3.0597 17 6 2.5684 5.6494 -2.2419 18 7 2.4275 6.2384 -3.4093 19 14 1.9579 6.4924 -0.6908 20 1 3.0448 7.3286 -0.1212 21 1 0.7929 7.3522 -1.0205 22 1 1.5505 5.4664 0.3026 23 1 -0.3633 -1.0210 0.1169 24 1 -0.3633 0.6117 0.8257 25 1 -0.3633 0.4092 -0.9427 26 1 1.3820 1.9830 -0.5782 27 1 0.2976 1.2861 2.1968 28 1 1.0482 2.7812 2.8045 29 1 0.2972 2.7547 1.1911 30 1 3.5119 -0.8865 -0.4888 31 1 5.7591 -0.9863 -1.4899 32 1 6.8910 1.0875 -2.1845 33 1 5.7752 3.2608 -1.8784 34 1 5.1634 4.7781 -0.3652 35 1 3.6903 5.5852 0.2244 36 1 4.3052 4.1371 1.0564 37 1 2.0062 7.1103 -3.4650 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260290175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:33 Heat of formation + Delta-G solvation = -81.658675 kcal Electronic energy + Delta-G solvation = -19171.911952 eV Core-core repulsion = 16299.942295 eV Total energy + Delta-G solvation = -2871.969657 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.06967 -39.39562 -37.06977 -36.30330 -33.78759 -32.63825 -30.46797 -28.79809 -27.10657 -26.99525 -25.81456 -24.42514 -22.38496 -21.10404 -18.82922 -18.29301 -18.09210 -17.99814 -16.93179 -16.20063 -15.78827 -15.51322 -15.32868 -14.85859 -14.70455 -14.59068 -14.49343 -14.12126 -13.76693 -13.55547 -13.19585 -12.99203 -12.83200 -12.56617 -12.43667 -12.20542 -11.79115 -11.64906 -11.20582 -11.12944 -11.00669 -10.82666 -10.74909 -9.67499 -9.39405 -8.30957 -6.34643 0.43454 0.65073 1.28576 1.32043 1.43570 2.29752 2.45076 2.77362 3.02702 3.21735 3.69958 3.97410 4.09188 4.19837 4.22051 4.29521 4.36227 4.44143 4.49179 4.54397 4.65404 4.71069 4.72968 4.81388 4.84952 4.88038 5.11372 5.17457 5.29730 5.43299 5.57813 5.60872 5.71669 5.94174 6.01930 6.08279 6.19097 6.32781 6.70919 7.29434 8.85325 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.010098 C = 0.007551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.109857 B = 2772.086298 C = 3707.267071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.402 6.402 3 C 0.297 3.703 4 O -0.400 6.400 5 C 0.013 3.987 6 C -0.118 4.118 7 C -0.090 4.090 8 C -0.139 4.139 9 C -0.109 4.109 10 C -0.132 4.132 11 C -0.035 4.035 12 C 0.042 3.958 13 H 0.030 0.970 14 C -0.137 4.137 15 C -0.507 4.507 16 H 0.035 0.965 17 C 0.017 3.983 18 N -0.945 5.945 19 Si 0.944 3.056 20 H -0.266 1.266 21 H -0.297 1.297 22 H -0.248 1.248 23 H 0.114 0.886 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.041 0.959 30 H 0.138 0.862 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.114 0.886 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.054 0.946 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.998 -11.686 9.713 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.323 6.323 3 C 0.202 3.798 4 O -0.321 6.321 5 C -0.083 4.083 6 C -0.118 4.118 7 C -0.108 4.108 8 C -0.157 4.157 9 C -0.127 4.127 10 C -0.150 4.150 11 C -0.035 4.035 12 C 0.023 3.977 13 H 0.048 0.952 14 C -0.194 4.194 15 C -0.545 4.545 16 H 0.054 0.946 17 C -0.181 4.181 18 N -0.585 5.585 19 Si 0.771 3.229 20 H -0.193 1.193 21 H -0.225 1.225 22 H -0.172 1.172 23 H 0.132 0.868 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.155 0.845 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.132 0.868 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.785 -11.693 9.718 15.224 hybrid contribution -0.938 1.231 -0.035 1.548 sum -1.723 -10.461 9.684 14.359 Atomic orbital electron populations 1.23328 0.79393 1.04985 1.01094 1.87904 1.21658 1.28763 1.93966 1.21545 0.92484 0.82646 0.83105 1.88078 1.32130 1.82503 1.29366 1.23205 0.85881 1.00089 0.99085 1.19264 0.94897 0.94361 1.03273 1.21103 0.95108 0.96775 0.97766 1.21384 0.94860 0.99285 1.00126 1.21495 1.00681 0.91803 0.98671 1.21084 0.95002 0.98776 1.00171 1.19890 0.94464 0.94422 0.94708 1.18219 0.94651 0.90316 0.94530 0.95209 1.22030 1.00268 0.98280 0.98827 1.21171 1.38329 1.02607 0.92435 0.94639 1.25789 0.95625 0.97770 0.98881 1.70029 1.45656 1.16729 1.26134 0.85923 0.77558 0.79023 0.80421 1.19255 1.22485 1.17242 0.86788 0.92292 0.93766 0.92845 0.91398 0.88237 0.94069 0.84455 0.82730 0.83404 0.86756 0.92632 0.94803 0.92729 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 10.68 113.37 1.21 1.38 16 2 O -0.40 -12.90 9.17 -126.21 -1.16 -14.06 16 3 C 0.30 11.04 2.10 71.24 0.15 11.19 16 4 O -0.40 -14.44 10.19 -126.21 -1.29 -15.73 16 5 C 0.01 0.35 9.76 113.37 1.11 1.46 16 6 C -0.12 -4.67 5.49 -19.86 -0.11 -4.78 16 7 C -0.09 -3.02 9.36 22.27 0.21 -2.81 16 8 C -0.14 -4.06 10.05 22.27 0.22 -3.83 16 9 C -0.11 -3.44 10.05 22.27 0.22 -3.21 16 10 C -0.13 -5.26 8.71 22.27 0.19 -5.06 16 11 C -0.03 -1.51 4.74 -19.86 -0.09 -1.60 16 12 C 0.04 1.99 1.85 -12.29 -0.02 1.97 16 13 H 0.03 1.45 4.60 -2.39 -0.01 1.44 16 14 C -0.14 -6.00 8.48 71.98 0.61 -5.38 16 15 C -0.51 -28.96 8.83 25.60 0.23 -28.74 16 16 H 0.04 2.26 7.85 -2.91 -0.02 2.23 16 17 C 0.02 0.96 5.45 84.66 0.46 1.42 16 18 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 19 Si 0.94 44.76 24.37 68.60 1.67 46.43 16 20 H -0.27 -12.10 6.86 99.48 0.68 -11.42 16 21 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 23 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.06 1.24 4.80 -2.39 -0.01 1.23 16 25 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.05 2.17 6.42 -2.39 -0.02 2.15 16 27 H 0.07 1.50 6.27 -2.38 -0.01 1.48 16 28 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.04 1.13 7.80 -2.39 -0.02 1.11 16 30 H 0.14 4.16 7.13 -2.91 -0.02 4.14 16 31 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 33 H 0.11 4.69 7.58 -2.91 -0.02 4.67 16 34 H 0.05 2.36 7.39 -2.39 -0.02 2.34 16 35 H 0.03 1.49 3.25 -2.39 -0.01 1.49 16 36 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -68.37 293.80 4.90 -63.47 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.98 Total: 16.34 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 4.39 Total: -38.01 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.30 Total: -58.44 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -2.44 Total: -29.79 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.67 Total: 46.43 kcal Total: -68.37 4.90 -63.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.188 kcal (2) G-P(sol) polarization free energy of solvation -68.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds