Wall clock time and date at job start Mon Mar 30 2020 06:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00393 * 2 1 4 4 O 1.42905 * 109.46842 * 82.53438 * 3 2 1 5 5 C 1.42892 * 114.00322 * 286.44799 * 4 3 2 6 6 C 1.50693 * 109.47516 * 202.53697 * 3 2 1 7 7 C 1.38255 * 119.99915 * 345.02376 * 6 3 2 8 8 C 1.38217 * 120.00043 * 179.97438 * 7 6 3 9 9 C 1.38252 * 120.00181 * 359.97438 * 8 7 6 10 10 C 1.38220 * 119.99797 * 359.73879 * 9 8 7 11 11 C 1.38211 * 120.00292 * 165.00034 * 6 3 2 12 12 C 1.50701 * 119.99793 * 0.02562 * 11 6 3 13 13 H 1.09002 * 109.46952 * 359.97438 * 12 11 6 14 14 C 1.53004 * 109.47052 * 240.00293 * 12 11 6 15 15 C 1.50693 * 109.47069 * 120.00220 * 12 11 6 16 16 H 1.08007 * 120.00008 * 5.52865 * 15 12 11 17 17 C 1.37881 * 120.00514 * 185.53352 * 15 12 11 18 18 N 1.31506 * 120.00495 * 185.78345 * 17 15 12 19 19 Si 1.86800 * 119.99368 * 5.78115 * 17 15 12 20 20 H 1.48503 * 109.47237 * 270.00249 * 19 17 15 21 21 H 1.48502 * 109.47504 * 30.00056 * 19 17 15 22 22 H 1.48502 * 109.47200 * 150.00385 * 19 17 15 23 23 H 1.09003 * 109.47281 * 183.29692 * 1 2 3 24 24 H 1.09001 * 109.47083 * 303.29691 * 1 2 3 25 25 H 1.09001 * 109.46876 * 63.29609 * 1 2 3 26 26 H 1.08999 * 109.47067 * 322.54330 * 3 2 1 27 27 H 1.09000 * 109.47094 * 197.46664 * 5 4 3 28 28 H 1.08998 * 109.47050 * 317.46260 * 5 4 3 29 29 H 1.09001 * 109.47134 * 77.46371 * 5 4 3 30 30 H 1.08000 * 120.00033 * 359.97438 * 7 6 3 31 31 H 1.07999 * 119.99729 * 179.97438 * 8 7 6 32 32 H 1.08000 * 120.00285 * 179.97438 * 9 8 7 33 33 H 1.08001 * 120.00070 * 180.27483 * 10 9 8 34 34 H 1.08997 * 109.47413 * 54.75258 * 14 12 11 35 35 H 1.09000 * 109.46618 * 174.75816 * 14 12 11 36 36 H 1.09003 * 109.46673 * 294.75037 * 14 12 11 37 37 H 0.97004 * 119.99829 * 354.89018 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 2.0442 1.8117 1.3359 5 6 0.7676 2.2108 1.8388 6 6 3.4134 1.2305 -0.5445 7 6 4.0472 0.0069 -0.6563 8 6 5.3339 -0.0618 -1.1563 9 6 5.9871 1.0929 -1.5451 10 6 5.3514 2.3157 -1.4388 11 6 4.0667 2.3851 -0.9326 12 6 3.3759 3.7189 -0.8107 13 1 2.3764 3.5742 -0.4005 14 6 3.2705 4.3669 -2.1928 15 6 4.1705 4.6142 0.1046 16 1 5.1282 4.2874 0.4821 17 6 3.6749 5.8507 0.4604 18 7 4.4154 6.6781 1.1651 19 14 1.9515 6.3507 -0.0585 20 1 2.0092 7.0294 -1.3781 21 1 1.0950 5.1418 -0.1608 22 1 1.3801 7.2782 0.9506 23 1 -0.3634 -1.0260 0.0591 24 1 -0.3633 0.5642 0.8590 25 1 -0.3633 0.4618 -0.9181 26 1 1.4129 1.9692 -0.6250 27 1 0.9044 2.8554 2.7071 28 1 0.2259 2.7543 1.0647 29 1 0.1987 1.3272 2.1282 30 1 3.5368 -0.8953 -0.3530 31 1 5.8291 -1.0177 -1.2432 32 1 6.9927 1.0393 -1.9353 33 1 5.8600 3.2173 -1.7467 34 1 2.7773 3.6793 -2.8798 35 1 2.6899 5.2864 -2.1195 36 1 4.2695 4.5966 -2.5634 37 1 5.2804 6.3914 1.4977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260290177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:36 Heat of formation + Delta-G solvation = -67.099423 kcal Electronic energy + Delta-G solvation = -19230.834401 eV Core-core repulsion = 16359.496080 eV Total energy + Delta-G solvation = -2871.338321 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.67280 -38.04385 -35.70610 -34.49215 -31.79319 -31.21575 -28.83304 -27.61416 -25.80854 -24.72495 -24.47671 -22.59340 -20.89633 -19.32856 -17.50110 -17.00729 -16.82731 -16.58363 -15.13712 -14.50061 -14.22780 -14.09425 -13.95290 -13.36053 -13.29114 -13.14710 -12.68146 -12.43638 -12.35438 -11.86684 -11.73456 -11.40000 -11.24694 -11.14438 -10.65120 -10.53004 -10.17637 -9.83733 -9.73627 -9.58833 -9.49527 -8.72382 -8.39890 -8.27575 -7.95988 -6.38049 -4.03390 1.83012 2.08067 3.32983 3.37173 3.54022 3.73363 4.09268 4.47381 4.60219 5.01353 5.19812 5.30706 5.34036 5.34578 5.48249 5.49918 5.56620 5.62455 5.67475 5.72527 5.99146 6.02188 6.22436 6.33505 6.38575 6.51745 6.68578 6.73403 6.88488 6.95987 7.04689 7.18745 7.32400 7.43296 7.57517 7.61717 8.08923 8.42080 8.93134 9.64627 11.00315 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.010574 C = 0.007611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.749685 B = 2647.302132 C = 3677.875527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.395 6.395 3 C 0.293 3.707 4 O -0.367 6.367 5 C 0.022 3.978 6 C -0.102 4.102 7 C -0.084 4.084 8 C -0.154 4.154 9 C -0.113 4.113 10 C -0.117 4.117 11 C 0.000 4.000 12 C 0.035 3.965 13 H 0.035 0.965 14 C -0.145 4.145 15 C -0.570 4.570 16 H 0.059 0.941 17 C 0.027 3.973 18 N -0.915 5.915 19 Si 1.055 2.945 20 H -0.284 1.284 21 H -0.283 1.283 22 H -0.290 1.290 23 H 0.085 0.915 24 H 0.051 0.949 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.026 0.974 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.639 -11.575 -4.452 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.315 6.315 3 C 0.198 3.802 4 O -0.287 6.287 5 C -0.074 4.074 6 C -0.102 4.102 7 C -0.102 4.102 8 C -0.172 4.172 9 C -0.131 4.131 10 C -0.135 4.135 11 C 0.000 4.000 12 C 0.016 3.984 13 H 0.053 0.947 14 C -0.202 4.202 15 C -0.608 4.608 16 H 0.077 0.923 17 C -0.176 4.176 18 N -0.550 5.550 19 Si 0.885 3.115 20 H -0.211 1.211 21 H -0.210 1.210 22 H -0.217 1.217 23 H 0.103 0.897 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.143 0.857 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.436 -10.454 -4.311 13.533 hybrid contribution 0.664 -1.046 -0.024 1.239 sum -6.772 -11.500 -4.335 14.032 Atomic orbital electron populations 1.23096 0.81554 1.02971 1.00548 1.87959 1.19365 1.30231 1.93991 1.21765 0.92679 0.81503 0.84209 1.88245 1.29058 1.80885 1.30481 1.23002 0.86035 0.98590 0.99818 1.19023 0.93654 0.94002 1.03550 1.20839 0.94312 0.97155 0.97891 1.20908 0.95350 0.97932 1.03036 1.21147 0.99256 0.92942 0.99800 1.21001 0.94708 0.97338 1.00405 1.20056 0.93777 0.94817 0.91382 1.18439 0.96545 0.89460 0.93983 0.94720 1.22165 1.00959 0.99140 0.97968 1.21942 1.06031 1.02334 1.30524 0.92262 1.25688 1.04031 0.92824 0.95082 1.70792 1.12900 1.36102 1.35255 0.83859 0.75923 0.75653 0.76047 1.21118 1.20988 1.21699 0.89655 0.93042 0.93980 0.91819 0.89492 0.93957 0.93854 0.85933 0.86816 0.86804 0.85723 0.95474 0.93748 0.92748 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 10.64 101.05 1.08 1.25 16 2 O -0.39 -6.60 9.19 -59.04 -0.54 -7.14 16 3 C 0.29 5.60 2.11 36.00 0.08 5.68 16 4 O -0.37 -7.59 10.19 -59.04 -0.60 -8.20 16 5 C 0.02 0.35 9.77 101.05 0.99 1.34 16 6 C -0.10 -2.08 5.49 -104.63 -0.57 -2.66 16 7 C -0.08 -1.52 9.36 -39.58 -0.37 -1.89 16 8 C -0.15 -2.55 10.05 -39.58 -0.40 -2.95 16 9 C -0.11 -1.95 10.05 -39.58 -0.40 -2.35 16 10 C -0.12 -2.35 8.72 -39.58 -0.35 -2.70 16 11 C 0.00 0.00 4.74 -104.62 -0.50 -0.50 16 12 C 0.03 0.82 1.83 -92.92 -0.17 0.65 16 13 H 0.03 0.84 4.00 -51.93 -0.21 0.63 16 14 C -0.14 -3.12 8.52 37.16 0.32 -2.80 16 15 C -0.57 -15.95 8.63 -34.44 -0.30 -16.25 16 16 H 0.06 1.81 7.77 -52.48 -0.41 1.40 16 17 C 0.03 0.79 5.43 -17.82 -0.10 0.69 16 18 N -0.92 -28.20 13.69 55.43 0.76 -27.44 16 19 Si 1.05 25.41 25.33 -169.99 -4.31 21.11 16 20 H -0.28 -6.50 6.80 56.52 0.38 -6.11 16 21 H -0.28 -6.26 6.35 56.52 0.36 -5.90 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.59 4.58 -51.93 -0.24 0.36 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 1.20 6.46 -51.93 -0.34 0.86 16 27 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.04 0.64 7.78 -51.93 -0.40 0.24 16 29 H 0.04 0.58 6.04 -51.93 -0.31 0.26 16 30 H 0.12 2.05 7.14 -52.49 -0.37 1.68 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.12 2.53 7.63 -52.49 -0.40 2.13 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.96 4.47 -51.93 -0.23 0.73 16 36 H 0.05 1.15 7.56 -51.93 -0.39 0.75 16 37 H 0.27 8.25 8.72 -40.82 -0.36 7.90 16 LS Contribution 294.83 15.07 4.44 4.44 Total: -1.00 -31.64 294.83 -5.99 -37.63 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.05 Total: 2.08 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -0.69 Total: -22.48 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 0.76 Total: -27.44 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -1.14 Total: -15.34 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.31 Total: 21.11 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.64 -5.99 -37.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.472 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds