Wall clock time and date at job start Mon Mar 30 2020 06:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00393 * 2 1 4 4 O 1.42905 * 109.46842 * 82.53438 * 3 2 1 5 5 C 1.42892 * 114.00322 * 286.44799 * 4 3 2 6 6 C 1.50693 * 109.47516 * 202.53697 * 3 2 1 7 7 C 1.38255 * 119.99915 * 345.02376 * 6 3 2 8 8 C 1.38217 * 120.00043 * 179.97438 * 7 6 3 9 9 C 1.38252 * 120.00181 * 359.97438 * 8 7 6 10 10 C 1.38220 * 119.99797 * 359.73879 * 9 8 7 11 11 C 1.38211 * 120.00292 * 165.00034 * 6 3 2 12 12 C 1.50701 * 119.99793 * 0.02562 * 11 6 3 13 13 H 1.09002 * 109.46952 * 359.97438 * 12 11 6 14 14 C 1.53004 * 109.47052 * 240.00293 * 12 11 6 15 15 C 1.50693 * 109.47069 * 120.00220 * 12 11 6 16 16 H 1.08007 * 120.00008 * 5.52865 * 15 12 11 17 17 C 1.37881 * 120.00514 * 185.53352 * 15 12 11 18 18 N 1.31506 * 120.00495 * 185.78345 * 17 15 12 19 19 Si 1.86800 * 119.99368 * 5.78115 * 17 15 12 20 20 H 1.48503 * 109.47237 * 270.00249 * 19 17 15 21 21 H 1.48502 * 109.47504 * 30.00056 * 19 17 15 22 22 H 1.48502 * 109.47200 * 150.00385 * 19 17 15 23 23 H 1.09003 * 109.47281 * 183.29692 * 1 2 3 24 24 H 1.09001 * 109.47083 * 303.29691 * 1 2 3 25 25 H 1.09001 * 109.46876 * 63.29609 * 1 2 3 26 26 H 1.08999 * 109.47067 * 322.54330 * 3 2 1 27 27 H 1.09000 * 109.47094 * 197.46664 * 5 4 3 28 28 H 1.08998 * 109.47050 * 317.46260 * 5 4 3 29 29 H 1.09001 * 109.47134 * 77.46371 * 5 4 3 30 30 H 1.08000 * 120.00033 * 359.97438 * 7 6 3 31 31 H 1.07999 * 119.99729 * 179.97438 * 8 7 6 32 32 H 1.08000 * 120.00285 * 179.97438 * 9 8 7 33 33 H 1.08001 * 120.00070 * 180.27483 * 10 9 8 34 34 H 1.08997 * 109.47413 * 54.75258 * 14 12 11 35 35 H 1.09000 * 109.46618 * 174.75816 * 14 12 11 36 36 H 1.09003 * 109.46673 * 294.75037 * 14 12 11 37 37 H 0.97004 * 119.99829 * 354.89018 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 2.0442 1.8117 1.3359 5 6 0.7676 2.2108 1.8388 6 6 3.4134 1.2305 -0.5445 7 6 4.0472 0.0069 -0.6563 8 6 5.3339 -0.0618 -1.1563 9 6 5.9871 1.0929 -1.5451 10 6 5.3514 2.3157 -1.4388 11 6 4.0667 2.3851 -0.9326 12 6 3.3759 3.7189 -0.8107 13 1 2.3764 3.5742 -0.4005 14 6 3.2705 4.3669 -2.1928 15 6 4.1705 4.6142 0.1046 16 1 5.1282 4.2874 0.4821 17 6 3.6749 5.8507 0.4604 18 7 4.4154 6.6781 1.1651 19 14 1.9515 6.3507 -0.0585 20 1 2.0092 7.0294 -1.3781 21 1 1.0950 5.1418 -0.1608 22 1 1.3801 7.2782 0.9506 23 1 -0.3634 -1.0260 0.0591 24 1 -0.3633 0.5642 0.8590 25 1 -0.3633 0.4618 -0.9181 26 1 1.4129 1.9692 -0.6250 27 1 0.9044 2.8554 2.7071 28 1 0.2259 2.7543 1.0647 29 1 0.1987 1.3272 2.1282 30 1 3.5368 -0.8953 -0.3530 31 1 5.8291 -1.0177 -1.2432 32 1 6.9927 1.0393 -1.9353 33 1 5.8600 3.2173 -1.7467 34 1 2.7773 3.6793 -2.8798 35 1 2.6899 5.2864 -2.1195 36 1 4.2695 4.5966 -2.5634 37 1 5.2804 6.3914 1.4977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260290177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:35 Heat of formation + Delta-G solvation = -87.502707 kcal Electronic energy + Delta-G solvation = -19231.719154 eV Core-core repulsion = 16359.496080 eV Total energy + Delta-G solvation = -2872.223073 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.08700 -39.42382 -37.03360 -36.30858 -33.77177 -32.66443 -30.40629 -28.83402 -26.93945 -26.72934 -25.84606 -24.25441 -22.37672 -21.03337 -19.52965 -18.33167 -18.22379 -17.96909 -16.60823 -15.95879 -15.74819 -15.53692 -15.32119 -14.95522 -14.68782 -14.52323 -14.37670 -14.12406 -13.59648 -13.51851 -13.27347 -13.04579 -12.73689 -12.47355 -12.38974 -12.09875 -11.80384 -11.56305 -11.33828 -11.04081 -10.81494 -10.74286 -10.56890 -9.72184 -9.51154 -8.64934 -6.32709 0.38973 0.60891 1.38383 1.48716 1.65481 2.47272 2.47852 2.75218 3.13356 3.21893 3.67529 3.91605 4.09779 4.15623 4.20065 4.26110 4.31486 4.44818 4.50768 4.54366 4.64692 4.70254 4.75393 4.79642 4.87553 4.89803 5.09457 5.16930 5.25829 5.46592 5.55734 5.67333 5.86263 6.03521 6.04828 6.06457 6.13713 6.21488 6.59333 7.44354 8.69721 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.010574 C = 0.007611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.749685 B = 2647.302132 C = 3677.875527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.404 6.404 3 C 0.297 3.703 4 O -0.406 6.406 5 C 0.014 3.986 6 C -0.120 4.120 7 C -0.088 4.088 8 C -0.141 4.141 9 C -0.110 4.110 10 C -0.136 4.136 11 C -0.034 4.034 12 C 0.037 3.963 13 H 0.034 0.966 14 C -0.141 4.141 15 C -0.564 4.564 16 H 0.014 0.986 17 C -0.026 4.026 18 N -0.950 5.950 19 Si 1.088 2.912 20 H -0.262 1.262 21 H -0.252 1.252 22 H -0.292 1.292 23 H 0.112 0.888 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.048 0.952 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.229 -13.833 -5.794 17.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.325 6.325 3 C 0.202 3.798 4 O -0.327 6.327 5 C -0.082 4.082 6 C -0.120 4.120 7 C -0.106 4.106 8 C -0.159 4.159 9 C -0.127 4.127 10 C -0.155 4.155 11 C -0.034 4.034 12 C 0.018 3.982 13 H 0.052 0.948 14 C -0.199 4.199 15 C -0.602 4.602 16 H 0.033 0.967 17 C -0.222 4.222 18 N -0.587 5.587 19 Si 0.910 3.090 20 H -0.187 1.187 21 H -0.176 1.176 22 H -0.219 1.219 23 H 0.130 0.870 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.156 0.844 31 H 0.173 0.827 32 H 0.164 0.836 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.026 -12.745 -5.671 16.615 hybrid contribution 1.230 -0.500 0.422 1.393 sum -7.795 -13.245 -5.248 16.240 Atomic orbital electron populations 1.23402 0.79258 1.05037 1.01449 1.87920 1.21843 1.28727 1.93995 1.21605 0.92229 0.82433 0.83516 1.88182 1.31603 1.81472 1.31419 1.23226 0.84968 1.00083 0.99902 1.19300 0.94796 0.94303 1.03628 1.21125 0.95059 0.96850 0.97592 1.21377 0.94596 0.99327 1.00560 1.21484 1.00501 0.91901 0.98842 1.21050 0.94627 0.98329 1.01449 1.19993 0.94833 0.94502 0.94080 1.18301 0.95768 0.90089 0.94021 0.94776 1.22063 1.01068 0.99560 0.97167 1.22080 1.04600 1.03134 1.30426 0.96740 1.27139 1.07239 0.93200 0.94605 1.70934 1.12764 1.37139 1.37868 0.83497 0.71921 0.76849 0.76703 1.18716 1.17635 1.21919 0.86998 0.92402 0.92856 0.91914 0.89706 0.93136 0.90933 0.84400 0.82737 0.83566 0.87242 0.92427 0.93846 0.93326 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.08 10.64 113.37 1.21 1.29 16 2 O -0.40 -12.54 9.19 -126.21 -1.16 -13.70 16 3 C 0.30 10.95 2.11 71.23 0.15 11.10 16 4 O -0.41 -16.56 10.19 -126.21 -1.29 -17.85 16 5 C 0.01 0.42 9.77 113.37 1.11 1.53 16 6 C -0.12 -4.78 5.49 -19.87 -0.11 -4.89 16 7 C -0.09 -3.00 9.36 22.27 0.21 -2.79 16 8 C -0.14 -4.18 10.05 22.27 0.22 -3.96 16 9 C -0.11 -3.53 10.05 22.27 0.22 -3.31 16 10 C -0.14 -5.52 8.72 22.27 0.19 -5.32 16 11 C -0.03 -1.48 4.74 -19.87 -0.09 -1.58 16 12 C 0.04 1.77 1.83 -12.29 -0.02 1.75 16 13 H 0.03 1.63 4.00 -2.39 -0.01 1.62 16 14 C -0.14 -5.94 8.52 71.98 0.61 -5.32 16 15 C -0.56 -32.73 8.63 25.60 0.22 -32.51 16 16 H 0.01 0.93 7.77 -2.91 -0.02 0.91 16 17 C -0.03 -1.53 5.43 84.66 0.46 -1.07 16 18 N -0.95 -60.93 13.69 21.45 0.29 -60.64 16 19 Si 1.09 50.67 25.33 68.60 1.74 52.41 16 20 H -0.26 -11.20 6.80 99.48 0.68 -10.53 16 21 H -0.25 -10.34 6.35 99.48 0.63 -9.70 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.06 1.16 4.58 -2.39 -0.01 1.15 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 2.26 6.46 -2.39 -0.02 2.25 16 27 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.05 1.43 7.78 -2.39 -0.02 1.41 16 29 H 0.07 1.76 6.04 -2.39 -0.01 1.74 16 30 H 0.14 4.20 7.14 -2.91 -0.02 4.18 16 31 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 32 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.11 4.61 7.63 -2.91 -0.02 4.59 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.04 1.80 4.47 -2.39 -0.01 1.79 16 36 H 0.05 2.05 7.56 -2.39 -0.02 2.03 16 37 H 0.25 16.34 8.72 -92.71 -0.81 15.53 16 Total: -1.00 -71.41 294.83 4.89 -66.53 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.92 Total: 18.35 kcal Atomic # 6 Polarization: -49.48 SS G_CDS: 4.38 Total: -45.10 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.29 Total: -60.64 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -2.45 Total: -31.55 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 1.74 Total: 52.41 kcal Total: -71.41 4.89 -66.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.977 kcal (2) G-P(sol) polarization free energy of solvation -71.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds