Wall clock time and date at job start Mon Mar 30 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47352 * 2 1 4 4 C 1.38659 * 120.05795 * 89.99661 * 3 2 1 5 5 O 1.35901 * 120.02467 * 0.02562 * 4 3 2 6 6 C 1.42895 * 116.99959 * 179.97438 * 5 4 3 7 7 C 1.38752 * 119.94454 * 179.97438 * 4 3 2 8 8 C 1.38190 * 120.05912 * 0.02562 * 7 4 3 9 9 C 1.38160 * 120.10622 * 359.97438 * 8 7 4 10 10 C 1.50703 * 119.97084 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47064 * 264.99738 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.38618 * 120.05359 * 270.27459 * 3 2 1 20 20 O 1.35891 * 120.02857 * 0.02562 * 19 3 2 21 21 C 1.42898 * 117.00175 * 270.23203 * 20 19 3 22 22 H 1.09000 * 109.46601 * 60.00009 * 1 2 3 23 23 H 1.08996 * 109.47222 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47094 * 300.00595 * 1 2 3 25 25 H 1.08997 * 109.47088 * 239.99538 * 2 1 3 26 26 H 1.09010 * 109.47126 * 119.99820 * 2 1 3 27 27 H 1.09007 * 109.46867 * 59.99996 * 6 5 4 28 28 H 1.08995 * 109.47132 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.47584 * 300.00809 * 6 5 4 30 30 H 1.08004 * 119.96863 * 180.02562 * 7 4 3 31 31 H 1.07998 * 119.94638 * 179.97438 * 8 7 4 32 32 H 1.09002 * 109.47152 * 144.99831 * 10 9 8 33 33 H 1.09001 * 109.46980 * 24.99931 * 10 9 8 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.08992 * 109.47546 * 299.99738 * 21 20 19 36 36 H 1.08999 * 109.47137 * 59.99946 * 21 20 19 37 37 H 1.09001 * 109.47060 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2639 2.0756 1.2001 5 8 2.0383 1.4364 2.3780 6 6 2.2988 2.1716 3.5753 7 6 2.7269 3.3835 1.1974 8 6 2.9570 4.0339 0.0000 9 6 2.7271 3.3836 -1.1972 10 6 2.9784 4.0959 -2.5012 11 6 1.6919 4.7036 -2.9978 12 1 0.7832 4.5861 -2.4260 13 6 1.6751 5.4104 -4.1815 14 7 2.7817 5.5539 -4.8774 15 14 0.0805 6.1642 -4.7965 16 1 -0.4285 7.1333 -3.7929 17 1 0.3281 6.8661 -6.0816 18 1 -0.9260 5.0923 -5.0045 19 6 2.2584 2.0772 -1.1998 20 8 2.0266 1.4402 -2.3776 21 6 3.1147 0.7070 -2.9437 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 1.6693 3.0612 3.5996 28 1 2.0778 1.5469 4.4407 29 1 3.3475 2.4680 3.5990 30 1 2.9077 3.8938 2.1319 31 1 3.3170 5.0521 -0.0001 32 1 3.3522 3.3845 -3.2377 33 1 3.7170 4.8829 -2.3488 34 1 2.7698 6.0508 -5.7104 35 1 3.9478 1.3831 -3.1355 36 1 3.4303 -0.0701 -2.2477 37 1 2.7958 0.2483 -3.8797 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260290534.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:10 Heat of formation + Delta-G solvation = -65.348711 kcal Electronic energy + Delta-G solvation = -18751.716839 eV Core-core repulsion = 15880.454435 eV Total energy + Delta-G solvation = -2871.262404 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11039 -38.33961 -35.91017 -34.09896 -32.78963 -30.33769 -29.01947 -27.79332 -26.36112 -26.00107 -23.48736 -22.86213 -20.97601 -19.76340 -17.89212 -16.56881 -16.26049 -15.70153 -15.56111 -14.94766 -14.67993 -14.48775 -13.89173 -13.56568 -13.21181 -12.89335 -12.61292 -12.33304 -12.20585 -11.74122 -11.49015 -11.40938 -11.30572 -11.14299 -10.76157 -10.56213 -10.50668 -10.45781 -10.21299 -9.65684 -9.29775 -9.14034 -8.33740 -8.05174 -7.34992 -5.96277 -3.97914 1.73754 2.03829 3.37592 3.40616 3.45181 3.48901 4.09122 4.50617 4.65191 5.10303 5.17552 5.23109 5.29173 5.39265 5.47428 5.54003 5.68975 5.69788 5.76739 5.85520 5.93640 6.03817 6.05101 6.16029 6.24433 6.39387 6.43967 6.64660 6.82588 6.93784 7.10200 7.18512 7.58397 7.73506 7.82311 7.99245 8.22662 8.42158 9.04993 9.64238 11.13704 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023304 B = 0.006768 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.204490 B = 4136.046181 C = 4516.922210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.136 4.136 4 C 0.107 3.893 5 O -0.319 6.319 6 C 0.031 3.969 7 C -0.209 4.209 8 C -0.082 4.082 9 C -0.083 4.083 10 C 0.058 3.942 11 C -0.498 4.498 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.898 5.898 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.128 3.872 20 O -0.316 6.316 21 C 0.039 3.961 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.031 0.969 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.694 -8.951 12.150 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 C -0.137 4.137 4 C 0.063 3.937 5 O -0.233 6.233 6 C -0.065 4.065 7 C -0.228 4.228 8 C -0.101 4.101 9 C -0.084 4.084 10 C 0.022 3.978 11 C -0.537 4.537 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.538 5.538 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.201 1.201 19 C 0.084 3.916 20 O -0.232 6.232 21 C -0.056 4.056 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.527 -9.074 11.909 14.981 hybrid contribution -0.553 0.828 -0.173 1.011 sum -0.025 -8.245 11.736 14.343 Atomic orbital electron populations 1.21669 0.95075 1.00780 1.02233 1.20162 0.96095 0.92247 1.01736 1.19369 1.06866 0.97395 0.90084 1.18376 0.99224 0.91254 0.84831 1.85993 1.83567 1.41391 1.12353 1.22937 1.00611 0.97369 0.85563 1.21125 1.08099 0.94530 0.99051 1.20764 0.99106 0.99395 0.90805 1.20966 0.95844 0.93442 0.98100 1.18198 0.97511 0.94570 0.87539 1.20966 0.94360 1.32313 1.06036 0.92699 1.24960 0.96275 0.96441 0.96608 1.69941 1.26591 1.41952 1.15307 0.86626 0.83931 0.79369 0.77932 1.20305 1.21320 1.20149 1.18064 0.98590 0.90836 0.84093 1.86072 1.35745 1.66753 1.34662 1.22877 0.90436 0.94565 0.97690 0.92164 0.93180 0.92992 0.91548 0.91519 0.92984 0.88923 0.93062 0.86201 0.85730 0.95100 0.95706 0.92962 0.93251 0.94607 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.89 37.16 0.37 -1.73 16 2 C -0.07 -1.03 5.62 -27.88 -0.16 -1.18 16 3 C -0.14 -2.52 5.16 -104.33 -0.54 -3.06 16 4 C 0.11 1.87 6.66 -39.24 -0.26 1.60 16 5 O -0.32 -4.80 9.54 -19.43 -0.19 -4.98 16 6 C 0.03 0.32 9.81 101.05 0.99 1.32 16 7 C -0.21 -3.57 9.04 -39.41 -0.36 -3.92 16 8 C -0.08 -1.63 9.67 -39.63 -0.38 -2.01 16 9 C -0.08 -1.87 5.08 -104.44 -0.53 -2.40 16 10 C 0.06 1.54 4.82 -29.03 -0.14 1.40 16 11 C -0.50 -14.36 9.09 -34.44 -0.31 -14.68 16 12 H 0.05 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 15 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.13 2.70 5.66 -39.24 -0.22 2.48 16 20 O -0.32 -6.68 8.91 -19.40 -0.17 -6.86 16 21 C 0.04 0.65 10.42 101.05 1.05 1.71 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.01 6.30 -51.93 -0.33 0.68 16 26 H 0.07 0.98 7.53 -51.92 -0.39 0.58 16 27 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.12 1.66 6.29 -52.48 -0.33 1.33 16 31 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.03 0.85 6.42 -51.93 -0.33 0.51 16 33 H 0.02 0.67 8.05 -51.93 -0.42 0.26 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.05 0.87 7.17 -51.93 -0.37 0.50 16 36 H 0.04 0.51 7.23 -51.93 -0.38 0.14 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -31.76 308.11 -6.01 -37.76 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -5.42 Total: -2.68 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -0.59 Total: -18.90 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.36 Total: -11.84 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.76 -6.01 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290534.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.587 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds