Wall clock time and date at job start Mon Mar 30 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47352 * 2 1 4 4 C 1.38659 * 120.05795 * 89.99661 * 3 2 1 5 5 O 1.35901 * 120.02467 * 0.02562 * 4 3 2 6 6 C 1.42895 * 116.99959 * 179.97438 * 5 4 3 7 7 C 1.38752 * 119.94454 * 179.97438 * 4 3 2 8 8 C 1.38190 * 120.05912 * 0.02562 * 7 4 3 9 9 C 1.38160 * 120.10622 * 359.97438 * 8 7 4 10 10 C 1.50703 * 119.97084 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47064 * 264.99738 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.38618 * 120.05359 * 270.27459 * 3 2 1 20 20 O 1.35891 * 120.02857 * 0.02562 * 19 3 2 21 21 C 1.42898 * 117.00175 * 270.23203 * 20 19 3 22 22 H 1.09000 * 109.46601 * 60.00009 * 1 2 3 23 23 H 1.08996 * 109.47222 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47094 * 300.00595 * 1 2 3 25 25 H 1.08997 * 109.47088 * 239.99538 * 2 1 3 26 26 H 1.09010 * 109.47126 * 119.99820 * 2 1 3 27 27 H 1.09007 * 109.46867 * 59.99996 * 6 5 4 28 28 H 1.08995 * 109.47132 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.47584 * 300.00809 * 6 5 4 30 30 H 1.08004 * 119.96863 * 180.02562 * 7 4 3 31 31 H 1.07998 * 119.94638 * 179.97438 * 8 7 4 32 32 H 1.09002 * 109.47152 * 144.99831 * 10 9 8 33 33 H 1.09001 * 109.46980 * 24.99931 * 10 9 8 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.08992 * 109.47546 * 299.99738 * 21 20 19 36 36 H 1.08999 * 109.47137 * 59.99946 * 21 20 19 37 37 H 1.09001 * 109.47060 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2639 2.0756 1.2001 5 8 2.0383 1.4364 2.3780 6 6 2.2988 2.1716 3.5753 7 6 2.7269 3.3835 1.1974 8 6 2.9570 4.0339 0.0000 9 6 2.7271 3.3836 -1.1972 10 6 2.9784 4.0959 -2.5012 11 6 1.6919 4.7036 -2.9978 12 1 0.7832 4.5861 -2.4260 13 6 1.6751 5.4104 -4.1815 14 7 2.7817 5.5539 -4.8774 15 14 0.0805 6.1642 -4.7965 16 1 -0.4285 7.1333 -3.7929 17 1 0.3281 6.8661 -6.0816 18 1 -0.9260 5.0923 -5.0045 19 6 2.2584 2.0772 -1.1998 20 8 2.0266 1.4402 -2.3776 21 6 3.1147 0.7070 -2.9437 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 1.6693 3.0612 3.5996 28 1 2.0778 1.5469 4.4407 29 1 3.3475 2.4680 3.5990 30 1 2.9077 3.8938 2.1319 31 1 3.3170 5.0521 -0.0001 32 1 3.3522 3.3845 -3.2377 33 1 3.7170 4.8829 -2.3488 34 1 2.7698 6.0508 -5.7104 35 1 3.9478 1.3831 -3.1355 36 1 3.4303 -0.0701 -2.2477 37 1 2.7958 0.2483 -3.8797 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260290534.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:10 Heat of formation + Delta-G solvation = -84.338437 kcal Electronic energy + Delta-G solvation = -18752.540295 eV Core-core repulsion = 15880.454435 eV Total energy + Delta-G solvation = -2872.085860 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.50751 -39.68172 -37.37445 -35.67227 -34.66469 -32.08523 -30.36119 -29.15675 -27.70295 -27.55550 -25.04587 -24.56232 -22.38181 -21.29217 -19.21770 -18.48419 -17.96111 -17.07056 -16.77122 -16.65450 -16.15415 -15.89843 -15.40556 -14.81785 -14.61574 -14.42551 -14.22409 -13.82204 -13.46868 -13.45131 -13.20295 -12.77608 -12.63775 -12.61157 -12.46902 -12.37235 -11.94181 -11.88398 -11.57991 -11.53141 -11.27853 -10.72255 -10.53860 -9.49593 -8.87659 -8.15575 -6.27688 0.28455 0.53809 1.37869 1.41164 1.49077 2.32186 2.40353 2.67487 3.13537 3.19073 3.81703 3.98560 4.12241 4.31575 4.39728 4.46690 4.49260 4.51522 4.54231 4.56591 4.60691 4.66416 4.76410 4.79334 5.03625 5.09146 5.12404 5.24750 5.33354 5.41898 5.43804 5.55768 5.67084 5.77677 5.96007 6.21973 6.48204 6.74581 6.81820 7.38724 8.92140 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023304 B = 0.006768 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.204490 B = 4136.046181 C = 4516.922210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 C -0.145 4.145 4 C 0.120 3.880 5 O -0.323 6.323 6 C 0.018 3.982 7 C -0.201 4.201 8 C -0.089 4.089 9 C -0.124 4.124 10 C 0.072 3.928 11 C -0.516 4.516 12 H 0.044 0.956 13 C 0.007 3.993 14 N -0.930 5.930 15 Si 0.959 3.041 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.273 1.273 19 C 0.117 3.883 20 O -0.342 6.342 21 C 0.036 3.964 22 H 0.036 0.964 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.123 0.877 29 H 0.063 0.937 30 H 0.157 0.843 31 H 0.127 0.873 32 H 0.006 0.994 33 H 0.001 0.999 34 H 0.264 0.736 35 H 0.030 0.970 36 H 0.063 0.937 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -9.856 14.303 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.100 4.100 3 C -0.146 4.146 4 C 0.074 3.926 5 O -0.237 6.237 6 C -0.077 4.077 7 C -0.220 4.220 8 C -0.107 4.107 9 C -0.124 4.124 10 C 0.035 3.965 11 C -0.554 4.554 12 H 0.063 0.937 13 C -0.191 4.191 14 N -0.570 5.570 15 Si 0.784 3.216 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.198 1.198 19 C 0.073 3.927 20 O -0.259 6.259 21 C -0.058 4.058 22 H 0.055 0.945 23 H 0.096 0.904 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.141 0.859 29 H 0.082 0.918 30 H 0.175 0.825 31 H 0.145 0.855 32 H 0.024 0.976 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.484 -9.984 14.084 17.270 hybrid contribution -0.196 1.042 -0.705 1.273 sum -0.680 -8.942 13.379 16.107 Atomic orbital electron populations 1.21624 0.94472 1.02196 1.00961 1.20221 0.96513 0.90603 1.02640 1.19606 1.06583 0.98804 0.89607 1.18474 0.97349 0.91087 0.85659 1.86004 1.83060 1.42025 1.12585 1.23344 1.01677 0.98264 0.84387 1.21388 1.06754 0.94511 0.99307 1.20843 0.99192 0.99686 0.91014 1.20748 0.99740 0.94729 0.97207 1.17865 0.95830 0.93424 0.89371 1.21241 0.94951 1.32788 1.06435 0.93720 1.25818 0.99781 0.96801 0.96702 1.70057 1.28664 1.42608 1.15717 0.85593 0.79614 0.78637 0.77777 1.19280 1.20245 1.19803 1.18191 0.98928 0.90566 0.85018 1.86000 1.37388 1.67275 1.35283 1.23047 0.89136 0.94459 0.99133 0.94519 0.90441 0.93095 0.91260 0.89870 0.92221 0.85860 0.91806 0.82526 0.85521 0.97568 0.98107 0.92682 0.95113 0.91860 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.89 71.98 0.71 -3.07 16 2 C -0.06 -1.85 5.62 29.85 0.17 -1.68 16 3 C -0.14 -5.21 5.16 -19.67 -0.10 -5.32 16 4 C 0.12 3.88 6.66 22.49 0.15 4.03 16 5 O -0.32 -8.55 9.54 -92.44 -0.88 -9.43 16 6 C 0.02 0.30 9.81 113.37 1.11 1.41 16 7 C -0.20 -6.46 9.04 22.38 0.20 -6.25 16 8 C -0.09 -3.54 9.67 22.24 0.22 -3.32 16 9 C -0.12 -5.77 5.08 -19.75 -0.10 -5.87 16 10 C 0.07 4.00 4.82 29.10 0.14 4.14 16 11 C -0.52 -30.88 9.09 25.60 0.23 -30.65 16 12 H 0.04 2.69 7.74 -2.91 -0.02 2.67 16 13 C 0.01 0.39 5.46 84.66 0.46 0.86 16 14 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 15 Si 0.96 46.04 29.54 68.60 2.03 48.07 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 19 C 0.12 5.01 5.66 22.49 0.13 5.13 16 20 O -0.34 -14.88 8.91 -92.32 -0.82 -15.71 16 21 C 0.04 1.24 10.42 113.37 1.18 2.42 16 22 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.07 1.98 6.30 -2.39 -0.02 1.97 16 26 H 0.08 2.17 7.53 -2.38 -0.02 2.16 16 27 H 0.06 0.95 7.66 -2.38 -0.02 0.93 16 28 H 0.12 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 30 H 0.16 3.77 6.29 -2.91 -0.02 3.75 16 31 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 32 H 0.01 0.36 6.42 -2.39 -0.02 0.35 16 33 H 0.00 0.04 8.05 -2.39 -0.02 0.02 16 34 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.03 1.14 7.17 -2.39 -0.02 1.13 16 36 H 0.06 1.78 7.23 -2.39 -0.02 1.77 16 37 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -70.53 308.11 6.16 -64.37 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.05 Total: 7.80 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 4.50 Total: -38.17 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.28 Total: -56.94 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -1.70 Total: -25.14 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -70.53 6.16 -64.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290534.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.971 kcal (2) G-P(sol) polarization free energy of solvation -70.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds