Wall clock time and date at job start Mon Mar 30 2020 06:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99819 * 2 1 4 4 C 1.52995 * 109.46706 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47329 * 304.99635 * 4 3 2 6 6 O 1.42905 * 109.47424 * 65.00224 * 4 3 2 7 7 C 1.42904 * 113.99349 * 269.99912 * 6 4 3 8 8 C 1.50702 * 109.47178 * 184.99934 * 4 3 2 9 9 C 1.38256 * 119.99963 * 264.72737 * 8 4 3 10 10 C 1.38217 * 120.00088 * 180.29934 * 9 8 4 11 11 C 1.38255 * 120.00155 * 359.97105 * 10 9 8 12 12 C 1.38220 * 119.99677 * 0.02562 * 11 10 9 13 13 C 1.38215 * 120.00248 * 84.99787 * 8 4 3 14 14 C 1.50701 * 119.99815 * 359.72401 * 13 8 4 15 15 C 1.50701 * 109.46852 * 84.99787 * 14 13 8 16 16 H 1.08001 * 120.00218 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99719 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00101 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99762 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47051 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46958 * 120.00074 * 19 17 15 22 22 H 1.48492 * 109.47415 * 239.99730 * 19 17 15 23 23 H 1.09004 * 109.47180 * 300.00589 * 1 2 3 24 24 H 1.09001 * 109.46955 * 59.99905 * 1 2 3 25 25 H 1.09004 * 109.47475 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47526 * 59.99659 * 3 2 1 27 27 H 1.09004 * 109.47012 * 299.99390 * 3 2 1 28 28 H 1.09000 * 109.47012 * 299.99592 * 7 6 4 29 29 H 1.08997 * 109.47467 * 60.00051 * 7 6 4 30 30 H 1.08997 * 109.46575 * 179.97438 * 7 6 4 31 31 H 1.08001 * 120.00211 * 0.27430 * 9 8 4 32 32 H 1.08005 * 120.00022 * 180.02562 * 10 9 8 33 33 H 1.07999 * 120.00170 * 180.02562 * 11 10 9 34 34 H 1.08002 * 119.99600 * 179.97438 * 12 11 10 35 35 H 1.08997 * 109.47068 * 205.00015 * 14 13 8 36 36 H 1.09007 * 109.47121 * 325.00481 * 14 13 8 37 37 H 0.96998 * 119.99850 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8507 0.5685 0.8427 6 8 3.9658 0.5792 -1.2202 7 6 4.0472 -0.8465 -1.1647 8 6 4.1479 2.5559 0.1245 9 6 4.5381 3.2437 -1.0096 10 6 5.1056 4.4988 -0.8957 11 6 5.2825 5.0669 0.3523 12 6 4.8924 4.3793 1.4861 13 6 4.3248 3.1238 1.3721 14 6 3.8994 2.3742 2.6083 15 6 5.0037 1.4420 3.0354 16 1 5.9220 1.3971 2.4686 17 6 4.8418 0.6463 4.1497 18 7 3.7235 0.7005 4.8396 19 14 6.2110 -0.5088 4.6795 20 1 7.3563 -0.3812 3.7430 21 1 6.6532 -0.1554 6.0525 22 1 5.7123 -1.9074 4.6648 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 4.7578 -1.1400 -0.3920 29 1 3.0653 -1.2576 -0.9305 30 1 4.3802 -1.2291 -2.1294 31 1 4.3999 2.8001 -1.9846 32 1 5.4101 5.0363 -1.7817 33 1 5.7256 6.0478 0.4413 34 1 5.0310 4.8228 2.4610 35 1 3.6920 3.0832 3.4098 36 1 3.0002 1.7971 2.3919 37 1 3.6097 0.1410 5.6237 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260310766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:02 Heat of formation + Delta-G solvation = -77.800712 kcal Electronic energy + Delta-G solvation = -18826.361378 eV Core-core repulsion = 15954.559015 eV Total energy + Delta-G solvation = -2871.802363 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.33776 -37.67985 -36.45509 -33.59639 -31.93299 -30.98060 -28.50437 -27.09036 -26.33858 -25.44691 -23.38668 -22.71324 -20.80128 -19.79403 -16.66204 -16.41411 -16.23192 -15.70877 -15.44391 -14.89799 -14.68702 -14.21448 -14.04548 -13.74220 -13.39125 -12.64340 -12.45477 -12.29078 -12.14025 -11.77592 -11.44229 -11.32223 -11.18461 -10.92487 -10.78969 -10.67687 -10.39748 -10.11694 -9.54583 -9.42484 -9.34691 -9.07656 -8.45090 -8.15177 -7.78714 -6.07804 -4.11520 1.96550 2.14280 3.27379 3.35543 3.40720 4.03679 4.22004 4.38700 4.57145 5.26272 5.42160 5.46777 5.51434 5.55186 5.66914 5.68792 5.70492 5.78611 5.83266 5.87963 6.01032 6.03545 6.18745 6.24743 6.31355 6.42018 6.65117 6.76611 7.06040 7.12559 7.19159 7.42802 7.48177 7.70658 7.71811 7.81153 7.88801 8.27491 8.93962 9.52677 11.01820 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.009720 C = 0.007140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.645807 B = 2879.947719 C = 3920.627877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.049 3.951 4 C 0.134 3.866 5 H 0.105 0.895 6 O -0.385 6.385 7 C 0.033 3.967 8 C -0.095 4.095 9 C -0.094 4.094 10 C -0.154 4.154 11 C -0.119 4.119 12 C -0.129 4.129 13 C -0.026 4.026 14 C 0.042 3.958 15 C -0.511 4.511 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.041 0.959 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.029 0.971 36 H 0.033 0.967 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 2.007 -10.125 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.027 4.027 4 C 0.077 3.923 5 H 0.123 0.877 6 O -0.304 6.304 7 C -0.064 4.064 8 C -0.095 4.095 9 C -0.112 4.112 10 C -0.173 4.173 11 C -0.137 4.137 12 C -0.147 4.147 13 C -0.026 4.026 14 C 0.006 3.994 15 C -0.549 4.549 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.977 1.868 -10.133 10.726 hybrid contribution 0.463 -0.562 0.621 0.957 sum -2.515 1.307 -9.512 9.925 Atomic orbital electron populations 1.22688 0.81772 1.02219 0.99696 1.87863 1.19178 1.28145 1.95368 1.23157 0.94295 0.84683 1.00581 1.20873 0.90186 0.92836 0.88441 0.87743 1.87750 1.88136 1.19785 1.34724 1.22780 1.01145 0.81256 1.01169 1.19353 1.02360 0.94569 0.93241 1.20882 0.98054 0.94073 0.98233 1.20892 1.03093 0.96291 0.96976 1.21062 1.00311 0.99396 0.92943 1.21029 1.00385 0.95141 0.98134 1.20497 0.93083 0.93387 0.95605 1.18462 0.97233 0.94774 0.88946 1.21035 1.01201 1.21726 1.10976 0.92404 1.24984 0.95695 0.97062 0.96316 1.69956 1.24952 1.39895 1.18107 0.86538 0.82299 0.80713 0.78587 1.19594 1.20910 1.20871 0.94028 0.94623 0.90052 0.91784 0.93321 0.94094 0.92720 0.90817 0.86250 0.87131 0.87094 0.86322 0.95289 0.94907 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.39 -6.89 8.83 -40.08 -0.35 -7.25 16 3 C 0.05 0.90 5.35 37.16 0.20 1.10 16 4 C 0.13 2.69 2.03 -27.88 -0.06 2.63 16 5 H 0.10 2.42 6.06 -51.93 -0.31 2.11 16 6 O -0.39 -7.24 9.18 -40.08 -0.37 -7.61 16 7 C 0.03 0.54 10.71 101.05 1.08 1.62 16 8 C -0.09 -1.93 5.07 -104.62 -0.53 -2.46 16 9 C -0.09 -1.70 9.35 -39.58 -0.37 -2.07 16 10 C -0.15 -2.53 10.05 -39.58 -0.40 -2.93 16 11 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 12 C -0.13 -2.51 9.68 -39.58 -0.38 -2.90 16 13 C -0.03 -0.56 5.07 -104.62 -0.53 -1.09 16 14 C 0.04 1.07 4.44 -29.03 -0.13 0.94 16 15 C -0.51 -14.01 8.28 -34.44 -0.29 -14.30 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.06 1.22 6.89 -51.93 -0.36 0.86 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.05 0.89 6.40 -51.93 -0.33 0.56 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.12 2.01 7.35 -52.49 -0.39 1.63 16 32 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.03 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.03 0.85 5.67 -51.92 -0.29 0.56 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -29.71 308.14 -6.59 -36.30 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.45 Total: 1.22 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -0.78 Total: -18.67 kcal Atomic # 7 Polarization: -25.74 SS G_CDS: 0.74 Total: -25.01 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.72 Total: -14.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.71 -6.59 -36.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.500 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds