Wall clock time and date at job start Mon Mar 30 2020 06:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47298 * 55.00215 * 4 3 2 6 6 O 1.42903 * 109.47290 * 295.00270 * 4 3 2 7 7 C 1.42903 * 114.00320 * 149.99910 * 6 4 3 8 8 C 1.50693 * 109.47356 * 175.00246 * 4 3 2 9 9 C 1.38255 * 120.00316 * 94.99583 * 8 4 3 10 10 C 1.38209 * 120.00270 * 180.02562 * 9 8 4 11 11 C 1.38261 * 120.00318 * 359.97438 * 10 9 8 12 12 C 1.38213 * 119.99279 * 359.97438 * 11 10 9 13 13 C 1.38220 * 119.99786 * 274.72946 * 8 4 3 14 14 C 1.50699 * 119.99910 * 359.97438 * 13 8 4 15 15 C 1.50699 * 109.47187 * 85.00456 * 14 13 8 16 16 H 1.08004 * 119.99998 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99781 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00433 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99534 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47087 * 90.00034 * 19 17 15 21 21 H 1.48509 * 109.46634 * 209.99944 * 19 17 15 22 22 H 1.48501 * 109.47249 * 329.99516 * 19 17 15 23 23 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 24 24 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 25 25 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 27 27 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 28 28 H 1.09002 * 109.46884 * 300.00174 * 7 6 4 29 29 H 1.08996 * 109.46680 * 59.99629 * 7 6 4 30 30 H 1.09000 * 109.47187 * 179.97438 * 7 6 4 31 31 H 1.08002 * 119.99709 * 359.97438 * 9 8 4 32 32 H 1.08003 * 120.00429 * 179.97438 * 10 9 8 33 33 H 1.07998 * 120.00613 * 179.97438 * 11 10 9 34 34 H 1.08006 * 119.99917 * 179.97438 * 12 11 10 35 35 H 1.09002 * 109.46597 * 204.99755 * 14 13 8 36 36 H 1.08997 * 109.47089 * 324.99537 * 14 13 8 37 37 H 0.96997 * 120.00263 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5682 -0.8410 6 8 3.9649 0.5795 1.2220 7 6 5.1682 -0.1818 1.1018 8 6 4.1481 2.5558 -0.1231 9 6 4.5322 3.2464 1.0114 10 6 5.0936 4.5042 0.8979 11 6 5.2717 5.0718 -0.3502 12 6 4.8887 4.3809 -1.4844 13 6 4.3312 3.1208 -1.3712 14 6 3.9186 2.3653 -2.6082 15 6 2.4544 2.6010 -2.8757 16 1 1.8799 3.2341 -2.2158 17 6 1.8483 2.0083 -3.9630 18 7 2.5479 1.2377 -4.7669 19 14 0.0331 2.2998 -4.2942 20 1 -0.1257 3.4898 -5.1682 21 1 -0.5444 1.1095 -4.9689 22 1 -0.6737 2.5317 -3.0089 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6887 1.8463 -0.8899 27 1 1.6887 1.8463 0.8900 28 1 5.0195 -0.9849 0.3799 29 1 5.9760 0.4666 0.7627 30 1 5.4271 -0.6076 2.0713 31 1 4.3927 2.8032 1.9864 32 1 5.3932 5.0439 1.7841 33 1 5.7100 6.0548 -0.4389 34 1 5.0274 4.8244 -2.4594 35 1 4.5041 2.7140 -3.4589 36 1 4.0939 1.3000 -2.4586 37 1 2.1215 0.8210 -5.5320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260310809.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:05 Heat of formation + Delta-G solvation = -75.323629 kcal Electronic energy + Delta-G solvation = -19005.897021 eV Core-core repulsion = 16134.202072 eV Total energy + Delta-G solvation = -2871.694949 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.37718 -37.40528 -36.49099 -33.66343 -31.83455 -30.96180 -28.56507 -27.11216 -26.22187 -25.36005 -23.32606 -22.74191 -20.89969 -19.72873 -16.58341 -16.42609 -16.34651 -15.46794 -15.17624 -14.79807 -14.70453 -14.33609 -14.07838 -13.87771 -13.29872 -12.68047 -12.48206 -12.25855 -11.89278 -11.80477 -11.42535 -11.31523 -11.07216 -10.98732 -10.74007 -10.55824 -10.33699 -10.25384 -9.64108 -9.48124 -9.15772 -8.97050 -8.46286 -8.17962 -7.83562 -6.11909 -4.14964 1.94334 2.11205 3.23577 3.31178 3.32168 4.16501 4.26783 4.36217 4.59726 5.21871 5.42878 5.49134 5.62351 5.65418 5.69563 5.72887 5.78930 5.83968 5.86007 5.96469 6.04651 6.09033 6.15353 6.24297 6.33016 6.61706 6.64332 6.74686 7.02681 7.09435 7.15856 7.43158 7.62595 7.69810 7.75557 7.81381 7.84717 8.22257 8.87337 9.47297 10.97818 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.009884 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.551034 B = 2832.084747 C = 3833.857134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.386 6.386 3 C 0.060 3.940 4 C 0.142 3.858 5 H 0.087 0.913 6 O -0.382 6.382 7 C 0.034 3.966 8 C -0.120 4.120 9 C -0.098 4.098 10 C -0.154 4.154 11 C -0.120 4.120 12 C -0.128 4.128 13 C -0.027 4.027 14 C 0.044 3.956 15 C -0.511 4.511 16 H 0.058 0.942 17 C 0.065 3.935 18 N -0.886 5.886 19 Si 0.887 3.113 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.033 0.967 24 H 0.041 0.959 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.029 0.971 36 H 0.032 0.968 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 1.108 9.458 9.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.305 6.305 3 C -0.015 4.015 4 C 0.085 3.915 5 H 0.105 0.895 6 O -0.301 6.301 7 C -0.063 4.063 8 C -0.121 4.121 9 C -0.116 4.116 10 C -0.172 4.172 11 C -0.138 4.138 12 C -0.146 4.146 13 C -0.027 4.027 14 C 0.008 3.992 15 C -0.549 4.549 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.525 5.525 19 Si 0.715 3.285 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.097 0.903 26 H 0.123 0.877 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.089 0.841 9.466 9.730 hybrid contribution -1.004 0.425 -0.495 1.198 sum 1.085 1.267 8.971 9.125 Atomic orbital electron populations 1.22636 0.81990 1.01856 0.99685 1.87819 1.18827 1.28354 1.95478 1.23003 0.91186 0.84901 1.02455 1.20820 0.92787 0.90778 0.87112 0.89524 1.87844 1.41743 1.67601 1.32915 1.22690 0.87204 0.94743 1.01619 1.20002 1.02029 0.96809 0.93254 1.20882 0.98311 0.94245 0.98195 1.20886 1.03147 0.96199 0.96941 1.21062 1.00490 0.99276 0.92955 1.21055 1.00411 0.94986 0.98178 1.20535 0.91961 0.94228 0.95967 1.18420 0.96779 0.94997 0.89033 1.20909 0.93578 1.29870 1.10573 0.92361 1.24959 0.97962 0.94937 0.95930 1.69930 1.36120 1.31087 1.15314 0.86668 0.85338 0.77885 0.78649 1.20513 1.20987 1.19736 0.94850 0.94014 0.90325 0.87669 0.94220 0.94046 0.94376 0.90390 0.86333 0.87183 0.87131 0.86376 0.95259 0.95009 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 11.01 101.05 1.11 1.70 16 2 O -0.39 -7.91 10.67 -40.08 -0.43 -8.34 16 3 C 0.06 1.24 5.56 37.16 0.21 1.45 16 4 C 0.14 2.87 2.12 -27.89 -0.06 2.81 16 5 H 0.09 1.91 5.86 -51.93 -0.30 1.60 16 6 O -0.38 -7.08 9.15 -40.08 -0.37 -7.45 16 7 C 0.03 0.52 10.81 101.05 1.09 1.61 16 8 C -0.12 -2.40 5.02 -104.63 -0.53 -2.92 16 9 C -0.10 -1.74 9.35 -39.59 -0.37 -2.11 16 10 C -0.15 -2.48 10.05 -39.58 -0.40 -2.88 16 11 C -0.12 -1.98 10.05 -39.58 -0.40 -2.38 16 12 C -0.13 -2.46 9.68 -39.58 -0.38 -2.85 16 13 C -0.03 -0.57 5.07 -104.62 -0.53 -1.10 16 14 C 0.04 1.09 4.61 -29.04 -0.13 0.96 16 15 C -0.51 -13.43 6.93 -34.44 -0.24 -13.67 16 16 H 0.06 1.52 6.96 -52.48 -0.37 1.16 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -25.22 13.29 55.43 0.74 -24.49 16 19 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.11 2.39 4.77 -51.93 -0.25 2.14 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.12 1.97 7.35 -52.49 -0.39 1.58 16 32 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.12 2.18 8.06 -52.48 -0.42 1.75 16 35 H 0.03 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.03 0.83 6.23 -51.93 -0.32 0.51 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 308.32 15.07 4.65 4.65 Total: -1.00 -28.90 308.32 -6.56 -35.46 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.40 Total: 2.17 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -0.72 Total: -17.73 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.74 Total: -24.49 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.79 Total: -15.79 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.90 -6.56 -35.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310809.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.868 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds