Wall clock time and date at job start Mon Mar 30 2020 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47298 * 55.00215 * 4 3 2 6 6 O 1.42903 * 109.47290 * 295.00270 * 4 3 2 7 7 C 1.42903 * 114.00320 * 149.99910 * 6 4 3 8 8 C 1.50693 * 109.47356 * 175.00246 * 4 3 2 9 9 C 1.38255 * 120.00316 * 94.99583 * 8 4 3 10 10 C 1.38209 * 120.00270 * 180.02562 * 9 8 4 11 11 C 1.38261 * 120.00318 * 359.97438 * 10 9 8 12 12 C 1.38213 * 119.99279 * 359.97438 * 11 10 9 13 13 C 1.38220 * 119.99786 * 274.72946 * 8 4 3 14 14 C 1.50699 * 119.99910 * 359.97438 * 13 8 4 15 15 C 1.50699 * 109.47187 * 85.00456 * 14 13 8 16 16 H 1.08004 * 119.99998 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99781 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00433 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99534 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47087 * 90.00034 * 19 17 15 21 21 H 1.48509 * 109.46634 * 209.99944 * 19 17 15 22 22 H 1.48501 * 109.47249 * 329.99516 * 19 17 15 23 23 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 24 24 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 25 25 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 27 27 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 28 28 H 1.09002 * 109.46884 * 300.00174 * 7 6 4 29 29 H 1.08996 * 109.46680 * 59.99629 * 7 6 4 30 30 H 1.09000 * 109.47187 * 179.97438 * 7 6 4 31 31 H 1.08002 * 119.99709 * 359.97438 * 9 8 4 32 32 H 1.08003 * 120.00429 * 179.97438 * 10 9 8 33 33 H 1.07998 * 120.00613 * 179.97438 * 11 10 9 34 34 H 1.08006 * 119.99917 * 179.97438 * 12 11 10 35 35 H 1.09002 * 109.46597 * 204.99755 * 14 13 8 36 36 H 1.08997 * 109.47089 * 324.99537 * 14 13 8 37 37 H 0.96997 * 120.00263 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5682 -0.8410 6 8 3.9649 0.5795 1.2220 7 6 5.1682 -0.1818 1.1018 8 6 4.1481 2.5558 -0.1231 9 6 4.5322 3.2464 1.0114 10 6 5.0936 4.5042 0.8979 11 6 5.2717 5.0718 -0.3502 12 6 4.8887 4.3809 -1.4844 13 6 4.3312 3.1208 -1.3712 14 6 3.9186 2.3653 -2.6082 15 6 2.4544 2.6010 -2.8757 16 1 1.8799 3.2341 -2.2158 17 6 1.8483 2.0083 -3.9630 18 7 2.5479 1.2377 -4.7669 19 14 0.0331 2.2998 -4.2942 20 1 -0.1257 3.4898 -5.1682 21 1 -0.5444 1.1095 -4.9689 22 1 -0.6737 2.5317 -3.0089 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6887 1.8463 -0.8899 27 1 1.6887 1.8463 0.8900 28 1 5.0195 -0.9849 0.3799 29 1 5.9760 0.4666 0.7627 30 1 5.4271 -0.6076 2.0713 31 1 4.3927 2.8032 1.9864 32 1 5.3932 5.0439 1.7841 33 1 5.7100 6.0548 -0.4389 34 1 5.0274 4.8244 -2.4594 35 1 4.5041 2.7140 -3.4589 36 1 4.0939 1.3000 -2.4586 37 1 2.1215 0.8210 -5.5320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260310809.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:04 Heat of formation + Delta-G solvation = -92.235715 kcal Electronic energy + Delta-G solvation = -19006.630384 eV Core-core repulsion = 16134.202072 eV Total energy + Delta-G solvation = -2872.428312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86880 -38.88428 -37.95789 -35.55292 -33.49534 -32.54875 -30.03369 -28.91614 -27.54450 -26.74454 -25.21266 -24.26008 -22.44054 -21.25058 -18.55470 -17.96855 -17.85813 -16.99834 -16.65913 -16.50647 -16.18571 -15.87069 -15.50955 -15.29768 -14.67366 -14.53370 -14.09088 -13.71132 -13.50978 -13.35820 -13.13694 -12.83875 -12.71592 -12.54077 -12.36948 -12.17911 -11.95616 -11.77248 -11.51833 -11.26190 -10.67543 -10.59328 -10.45331 -9.60899 -9.37538 -8.19410 -6.28992 0.51911 0.65986 1.36830 1.37588 1.47173 2.37737 2.72536 2.86423 3.11637 3.13287 3.99494 4.08442 4.21446 4.26192 4.32009 4.37102 4.45780 4.53994 4.54639 4.60741 4.67488 4.74578 4.78588 4.79513 4.86286 4.99880 5.15601 5.24011 5.36615 5.39242 5.67280 5.69622 5.76527 5.98588 6.13380 6.25690 6.28350 6.31403 6.79759 7.36614 8.90212 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.009884 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.551034 B = 2832.084747 C = 3833.857134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.065 3.935 4 C 0.150 3.850 5 H 0.054 0.946 6 O -0.387 6.387 7 C 0.029 3.971 8 C -0.130 4.130 9 C -0.099 4.099 10 C -0.138 4.138 11 C -0.110 4.110 12 C -0.142 4.142 13 C -0.057 4.057 14 C 0.057 3.943 15 C -0.510 4.510 16 H 0.057 0.943 17 C 0.013 3.987 18 N -0.925 5.925 19 Si 0.946 3.054 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.261 1.261 23 H 0.056 0.944 24 H 0.029 0.971 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.112 0.888 31 H 0.134 0.866 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.116 0.884 35 H 0.001 0.999 36 H 0.005 0.995 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 2.542 11.904 12.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.011 4.011 4 C 0.092 3.908 5 H 0.072 0.928 6 O -0.306 6.306 7 C -0.067 4.067 8 C -0.131 4.131 9 C -0.117 4.117 10 C -0.156 4.156 11 C -0.128 4.128 12 C -0.160 4.160 13 C -0.057 4.057 14 C 0.020 3.980 15 C -0.548 4.548 16 H 0.075 0.925 17 C -0.186 4.186 18 N -0.565 5.565 19 Si 0.771 3.229 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.185 1.185 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.121 0.879 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.130 0.870 31 H 0.152 0.848 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.134 0.866 35 H 0.020 0.980 36 H 0.023 0.977 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.855 2.283 11.925 12.283 hybrid contribution -0.860 -0.023 -1.174 1.455 sum 0.996 2.260 10.751 11.031 Atomic orbital electron populations 1.22883 0.80062 1.03729 1.00172 1.87790 1.21069 1.28342 1.95562 1.22839 0.91613 0.84957 1.01677 1.20566 0.92695 0.90864 0.86651 0.92848 1.87804 1.43134 1.67934 1.31741 1.22904 0.85999 0.94314 1.03480 1.19993 1.02709 0.96827 0.93529 1.21096 0.97937 0.94908 0.97783 1.21360 1.00705 0.95284 0.98237 1.21425 0.99056 1.00363 0.91961 1.21165 1.00828 0.94468 0.99539 1.20274 0.94927 0.95468 0.95051 1.18124 0.95933 0.93864 0.90098 1.21134 0.94426 1.29058 1.10151 0.92482 1.25759 1.02191 0.94784 0.95862 1.70057 1.37947 1.32467 1.16016 0.85731 0.80424 0.77849 0.78937 1.19842 1.20792 1.18458 0.92560 0.95228 0.87880 0.90353 0.92790 0.94691 0.94242 0.86972 0.84827 0.83012 0.83401 0.86637 0.98024 0.97729 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.41 -16.82 10.67 -144.34 -1.54 -18.36 16 3 C 0.07 2.72 5.56 71.98 0.40 3.12 16 4 C 0.15 6.17 2.12 29.84 0.06 6.24 16 5 H 0.05 2.52 5.86 -2.38 -0.01 2.51 16 6 O -0.39 -14.05 9.15 -144.34 -1.32 -15.37 16 7 C 0.03 0.86 10.81 113.37 1.23 2.08 16 8 C -0.13 -5.17 5.02 -19.87 -0.10 -5.27 16 9 C -0.10 -3.26 9.35 22.27 0.21 -3.05 16 10 C -0.14 -3.86 10.05 22.27 0.22 -3.63 16 11 C -0.11 -3.27 10.05 22.27 0.22 -3.05 16 12 C -0.14 -5.37 9.68 22.27 0.22 -5.16 16 13 C -0.06 -2.49 5.07 -19.86 -0.10 -2.60 16 14 C 0.06 2.96 4.61 29.10 0.13 3.10 16 15 C -0.51 -27.83 6.93 25.60 0.18 -27.65 16 16 H 0.06 3.07 6.96 -2.91 -0.02 3.05 16 17 C 0.01 0.71 5.46 84.65 0.46 1.18 16 18 N -0.93 -54.89 13.29 21.45 0.28 -54.61 16 19 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 23 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.08 3.67 4.77 -2.39 -0.01 3.66 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.03 1.06 8.09 -2.39 -0.02 1.04 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.11 2.50 8.14 -2.39 -0.02 2.49 16 31 H 0.13 3.97 7.35 -2.91 -0.02 3.95 16 32 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 35 H 0.00 0.08 8.05 -2.39 -0.02 0.06 16 36 H 0.00 0.26 6.23 -2.39 -0.01 0.25 16 37 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -64.54 308.32 4.87 -59.66 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 1.04 Total: 15.97 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 4.38 Total: -32.56 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.28 Total: -54.61 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -2.86 Total: -33.73 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -64.54 4.87 -59.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310809.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.574 kcal (2) G-P(sol) polarization free energy of solvation -64.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds