Wall clock time and date at job start Mon Mar 30 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35994 * 117.00478 * 2 1 4 4 C 1.39200 * 120.07199 * 269.72515 * 3 2 1 5 5 O 1.35988 * 120.07162 * 0.25031 * 4 3 2 6 6 C 1.38523 * 119.85166 * 180.24988 * 4 3 2 7 7 C 1.38287 * 120.00126 * 0.02562 * 6 4 3 8 8 C 1.50699 * 119.92787 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47234 * 299.98468 * 8 7 6 10 10 C 1.53007 * 109.46462 * 59.98292 * 8 7 6 11 11 C 1.38208 * 120.14489 * 0.02562 * 7 6 4 12 12 C 1.38283 * 120.14924 * 359.97438 * 11 7 6 13 13 C 1.50700 * 120.00114 * 179.97438 * 12 11 7 14 14 C 1.50699 * 109.47059 * 265.01764 * 13 12 11 15 15 H 1.07994 * 120.00163 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99735 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00062 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99691 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47635 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.47239 * 120.00160 * 18 16 14 21 21 H 1.48500 * 109.46976 * 239.99877 * 18 16 14 22 22 H 1.08998 * 109.46861 * 300.00154 * 1 2 3 23 23 H 1.09000 * 109.46438 * 59.99854 * 1 2 3 24 24 H 1.08994 * 109.47155 * 179.97438 * 1 2 3 25 25 H 0.96706 * 114.00343 * 90.00627 * 5 4 3 26 26 H 1.08001 * 120.00092 * 180.02562 * 6 4 3 27 27 H 1.08997 * 109.47296 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.46751 * 179.97438 * 9 8 7 29 29 H 1.08999 * 109.47259 * 299.99554 * 9 8 7 30 30 H 1.08997 * 109.47405 * 59.99545 * 9 8 7 31 31 H 1.08990 * 109.47354 * 60.00197 * 10 8 7 32 32 H 1.09004 * 109.46288 * 179.97438 * 10 8 7 33 33 H 1.08998 * 109.47346 * 299.99312 * 10 8 7 34 34 H 1.08000 * 119.92399 * 179.97438 * 11 7 6 35 35 H 1.08998 * 109.47069 * 25.02234 * 13 12 11 36 36 H 1.09004 * 109.46799 * 145.02267 * 13 12 11 37 37 H 0.96995 * 120.00092 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 2.3684 1.8305 -1.2046 5 8 2.0614 1.2271 -2.3840 6 6 3.0020 3.0623 -1.1993 7 6 3.3139 3.6743 0.0010 8 6 4.0027 5.0146 0.0049 9 6 5.3491 4.8982 -0.7123 10 6 3.1268 6.0401 -0.7179 11 6 2.9952 3.0593 1.1970 12 6 2.3627 1.8296 1.1988 13 6 2.0173 1.1618 2.5048 14 6 3.1120 0.1966 2.8804 15 1 3.9720 0.0789 2.2379 16 6 3.0156 -0.5361 4.0444 17 7 1.9681 -0.3931 4.8266 18 14 4.3728 -1.7320 4.5103 19 1 5.4332 -1.7068 3.4710 20 1 4.9534 -1.3365 5.8188 21 1 3.8112 -3.1029 4.6120 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.1871 1.4567 -2.7275 26 1 3.2525 3.5448 -2.1325 27 1 4.1653 5.3366 1.0334 28 1 5.8471 5.8678 -0.7098 29 1 5.9731 4.1677 -0.1974 30 1 5.1864 4.5763 -1.7408 31 1 2.1676 6.1230 -0.2071 32 1 3.6248 7.0097 -0.7147 33 1 2.9641 5.7182 -1.7465 34 1 3.2408 3.5403 2.1323 35 1 1.9161 1.9176 3.2837 36 1 1.0768 0.6211 2.3988 37 1 1.9004 -0.9083 5.6456 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260320498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:01 Heat of formation + Delta-G solvation = -78.095764 kcal Electronic energy + Delta-G solvation = -18570.280675 eV Core-core repulsion = 15698.465517 eV Total energy + Delta-G solvation = -2871.815158 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.94082 -37.41055 -36.77785 -34.64153 -32.89483 -30.58543 -28.75709 -27.26411 -27.06903 -26.00019 -23.44732 -22.30495 -21.46705 -19.13249 -17.64511 -16.96342 -16.31768 -16.19608 -15.21525 -14.57208 -14.48252 -14.11378 -14.01082 -13.46720 -13.30106 -13.12821 -12.49471 -12.31213 -12.18446 -11.73509 -11.44107 -11.30466 -11.21333 -11.05662 -10.91945 -10.66346 -10.59286 -10.55230 -10.26458 -9.68551 -9.39321 -9.04921 -8.37828 -7.97285 -7.77095 -6.00483 -4.01842 1.66537 1.87426 3.33408 3.40591 3.47412 3.98121 4.39942 4.47511 4.55684 4.90738 5.01652 5.30303 5.35314 5.46406 5.60574 5.63712 5.66327 5.77417 5.83191 5.87008 5.89581 6.00575 6.05498 6.10688 6.22792 6.32351 6.36871 6.51667 6.75008 6.95133 7.04717 7.28913 7.53247 7.69973 7.81947 7.95887 8.28384 8.38108 9.01471 9.60725 11.10070 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.007194 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.965018 B = 3891.450149 C = 4691.029382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.313 6.313 3 C 0.063 3.937 4 C 0.080 3.920 5 O -0.491 6.491 6 C -0.154 4.154 7 C -0.072 4.072 8 C -0.054 4.054 9 C -0.143 4.143 10 C -0.142 4.142 11 C -0.118 4.118 12 C -0.037 4.037 13 C 0.054 3.946 14 C -0.498 4.498 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.898 5.898 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 H 0.048 0.952 23 H 0.030 0.970 24 H 0.088 0.912 25 H 0.376 0.624 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.124 0.876 35 H 0.028 0.972 36 H 0.033 0.967 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 9.995 -11.256 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.229 6.229 3 C 0.019 3.981 4 C 0.035 3.965 5 O -0.299 6.299 6 C -0.173 4.173 7 C -0.072 4.072 8 C -0.072 4.072 9 C -0.200 4.200 10 C -0.199 4.199 11 C -0.136 4.136 12 C -0.038 4.038 13 C 0.017 3.983 14 C -0.537 4.537 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.537 5.537 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.106 0.894 25 H 0.230 0.770 26 H 0.138 0.862 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.142 0.858 35 H 0.046 0.954 36 H 0.051 0.949 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.584 9.495 -11.038 14.572 hybrid contribution 0.051 -0.452 0.241 0.514 sum -0.533 9.043 -10.798 14.095 Atomic orbital electron populations 1.22836 0.80527 1.02649 0.99491 1.86171 1.18536 1.24110 1.94069 1.18891 1.00223 0.87734 0.91248 1.18765 1.01395 0.91802 0.84516 1.84894 1.38566 1.70635 1.35848 1.20806 1.04010 0.94545 0.97943 1.19641 0.98915 0.95976 0.92686 1.20079 0.94620 0.91989 1.00559 1.21849 0.96246 1.01404 1.00534 1.21843 0.99672 0.97960 1.00416 1.20955 1.00015 0.95382 0.97232 1.20975 0.93479 0.92392 0.96950 1.18286 0.97858 0.95229 0.86895 1.21006 1.04968 1.21855 1.05834 0.92491 1.24961 0.95943 0.97054 0.96334 1.69956 1.28663 1.41778 1.13325 0.86478 0.82108 0.80909 0.78245 1.19647 1.21032 1.20937 0.93368 0.95188 0.89394 0.76982 0.86176 0.90349 0.92752 0.92316 0.92639 0.92557 0.92738 0.92682 0.85775 0.95372 0.94933 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.80 101.05 1.09 1.76 16 2 O -0.31 -6.84 9.48 -34.20 -0.32 -7.17 16 3 C 0.06 1.34 5.71 -39.12 -0.22 1.12 16 4 C 0.08 1.46 6.72 -39.12 -0.26 1.20 16 5 O -0.49 -7.99 13.29 -34.18 -0.45 -8.44 16 6 C -0.15 -2.50 8.64 -39.46 -0.34 -2.84 16 7 C -0.07 -1.17 4.78 -104.62 -0.50 -1.67 16 8 C -0.05 -0.69 3.09 -91.77 -0.28 -0.97 16 9 C -0.14 -1.67 9.01 37.16 0.33 -1.34 16 10 C -0.14 -1.51 9.01 37.16 0.33 -1.17 16 11 C -0.12 -2.27 9.30 -39.58 -0.37 -2.63 16 12 C -0.04 -0.83 5.08 -104.50 -0.53 -1.36 16 13 C 0.05 1.41 4.82 -29.04 -0.14 1.27 16 14 C -0.50 -14.40 9.09 -34.44 -0.31 -14.71 16 15 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 18 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H 0.05 0.84 7.16 -51.93 -0.37 0.47 16 23 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.38 4.13 9.07 45.56 0.41 4.55 16 26 H 0.12 1.67 7.09 -52.49 -0.37 1.29 16 27 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.63 7.38 -51.93 -0.38 0.25 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.56 7.38 -51.93 -0.38 0.18 16 34 H 0.12 2.28 7.94 -52.49 -0.42 1.87 16 35 H 0.03 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.03 0.89 6.41 -51.93 -0.33 0.56 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 311.67 15.07 4.70 4.70 Total: -1.00 -32.60 311.67 -6.42 -39.02 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.75 Total: 0.50 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -1.30 Total: -19.78 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.78 Total: -15.61 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.60 -6.42 -39.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260320498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.080 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds