Wall clock time and date at job start Mon Mar 30 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35994 * 117.00478 * 2 1 4 4 C 1.39200 * 120.07199 * 269.72515 * 3 2 1 5 5 O 1.35988 * 120.07162 * 0.25031 * 4 3 2 6 6 C 1.38523 * 119.85166 * 180.24988 * 4 3 2 7 7 C 1.38287 * 120.00126 * 0.02562 * 6 4 3 8 8 C 1.50699 * 119.92787 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47234 * 299.98468 * 8 7 6 10 10 C 1.53007 * 109.46462 * 59.98292 * 8 7 6 11 11 C 1.38208 * 120.14489 * 0.02562 * 7 6 4 12 12 C 1.38283 * 120.14924 * 359.97438 * 11 7 6 13 13 C 1.50700 * 120.00114 * 179.97438 * 12 11 7 14 14 C 1.50699 * 109.47059 * 265.01764 * 13 12 11 15 15 H 1.07994 * 120.00163 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99735 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00062 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99691 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47635 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.47239 * 120.00160 * 18 16 14 21 21 H 1.48500 * 109.46976 * 239.99877 * 18 16 14 22 22 H 1.08998 * 109.46861 * 300.00154 * 1 2 3 23 23 H 1.09000 * 109.46438 * 59.99854 * 1 2 3 24 24 H 1.08994 * 109.47155 * 179.97438 * 1 2 3 25 25 H 0.96706 * 114.00343 * 90.00627 * 5 4 3 26 26 H 1.08001 * 120.00092 * 180.02562 * 6 4 3 27 27 H 1.08997 * 109.47296 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.46751 * 179.97438 * 9 8 7 29 29 H 1.08999 * 109.47259 * 299.99554 * 9 8 7 30 30 H 1.08997 * 109.47405 * 59.99545 * 9 8 7 31 31 H 1.08990 * 109.47354 * 60.00197 * 10 8 7 32 32 H 1.09004 * 109.46288 * 179.97438 * 10 8 7 33 33 H 1.08998 * 109.47346 * 299.99312 * 10 8 7 34 34 H 1.08000 * 119.92399 * 179.97438 * 11 7 6 35 35 H 1.08998 * 109.47069 * 25.02234 * 13 12 11 36 36 H 1.09004 * 109.46799 * 145.02267 * 13 12 11 37 37 H 0.96995 * 120.00092 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 2.3684 1.8305 -1.2046 5 8 2.0614 1.2271 -2.3840 6 6 3.0020 3.0623 -1.1993 7 6 3.3139 3.6743 0.0010 8 6 4.0027 5.0146 0.0049 9 6 5.3491 4.8982 -0.7123 10 6 3.1268 6.0401 -0.7179 11 6 2.9952 3.0593 1.1970 12 6 2.3627 1.8296 1.1988 13 6 2.0173 1.1618 2.5048 14 6 3.1120 0.1966 2.8804 15 1 3.9720 0.0789 2.2379 16 6 3.0156 -0.5361 4.0444 17 7 1.9681 -0.3931 4.8266 18 14 4.3728 -1.7320 4.5103 19 1 5.4332 -1.7068 3.4710 20 1 4.9534 -1.3365 5.8188 21 1 3.8112 -3.1029 4.6120 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.1871 1.4567 -2.7275 26 1 3.2525 3.5448 -2.1325 27 1 4.1653 5.3366 1.0334 28 1 5.8471 5.8678 -0.7098 29 1 5.9731 4.1677 -0.1974 30 1 5.1864 4.5763 -1.7408 31 1 2.1676 6.1230 -0.2071 32 1 3.6248 7.0097 -0.7147 33 1 2.9641 5.7182 -1.7465 34 1 3.2408 3.5403 2.1323 35 1 1.9161 1.9176 3.2837 36 1 1.0768 0.6211 2.3988 37 1 1.9004 -0.9083 5.6456 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260320498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:01 Heat of formation + Delta-G solvation = -99.053534 kcal Electronic energy + Delta-G solvation = -18571.189472 eV Core-core repulsion = 15698.465517 eV Total energy + Delta-G solvation = -2872.723955 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.38194 -38.77453 -38.12302 -36.11531 -34.81404 -32.28102 -30.13268 -29.02819 -27.91231 -27.50420 -25.34353 -23.62090 -22.96693 -20.47794 -19.02296 -18.56736 -18.33659 -17.64741 -16.69994 -16.47610 -15.83681 -15.46538 -15.18409 -14.71614 -14.50544 -14.42246 -14.23103 -14.06790 -13.38808 -13.19517 -13.00515 -12.75580 -12.63338 -12.57857 -12.38337 -12.28129 -12.02828 -11.90148 -11.57199 -11.45618 -11.34478 -10.64241 -10.54053 -9.47783 -9.25719 -8.21853 -6.32386 0.24482 0.40710 1.35652 1.36761 1.50394 2.37274 2.59033 2.98664 3.08992 3.21014 3.78585 3.93436 4.23623 4.33875 4.37475 4.39446 4.47075 4.52451 4.58599 4.70484 4.85080 4.88252 4.95473 4.98051 5.05068 5.16751 5.22682 5.33087 5.34744 5.41164 5.46564 5.67135 5.73868 5.86323 5.88382 6.16215 6.53492 6.76763 6.96069 7.34348 8.88171 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.007194 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.965018 B = 3891.450149 C = 4691.029382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.346 6.346 3 C 0.040 3.960 4 C 0.086 3.914 5 O -0.496 6.496 6 C -0.140 4.140 7 C -0.059 4.059 8 C -0.055 4.055 9 C -0.141 4.141 10 C -0.137 4.137 11 C -0.130 4.130 12 C -0.071 4.071 13 C 0.067 3.933 14 C -0.518 4.518 15 H 0.043 0.957 16 C 0.007 3.993 17 N -0.929 5.929 18 Si 0.961 3.039 19 H -0.271 1.271 20 H -0.271 1.271 21 H -0.275 1.275 22 H 0.030 0.970 23 H 0.065 0.935 24 H 0.102 0.898 25 H 0.402 0.598 26 H 0.155 0.845 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.121 0.879 35 H 0.005 0.995 36 H 0.008 0.992 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.095 11.179 -13.323 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.263 6.263 3 C -0.004 4.004 4 C 0.041 3.959 5 O -0.307 6.307 6 C -0.159 4.159 7 C -0.059 4.059 8 C -0.073 4.073 9 C -0.198 4.198 10 C -0.195 4.195 11 C -0.149 4.149 12 C -0.072 4.072 13 C 0.030 3.970 14 C -0.556 4.556 15 H 0.061 0.939 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.786 3.214 19 H -0.196 1.196 20 H -0.196 1.196 21 H -0.201 1.201 22 H 0.048 0.952 23 H 0.084 0.916 24 H 0.120 0.880 25 H 0.259 0.741 26 H 0.173 0.827 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.023 0.977 36 H 0.026 0.974 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.454 10.692 -13.118 16.929 hybrid contribution -0.333 -0.775 0.802 1.163 sum 0.122 9.917 -12.316 15.813 Atomic orbital electron populations 1.23024 0.78573 1.03911 1.00331 1.86084 1.20801 1.25143 1.94321 1.19108 1.01297 0.87919 0.92065 1.18749 1.00995 0.92031 0.84119 1.84825 1.40545 1.70826 1.34541 1.21147 1.02021 0.93506 0.99178 1.19992 0.97325 0.97151 0.91436 1.20187 0.95388 0.90365 1.01407 1.21848 0.95208 1.02419 1.00360 1.21821 0.99071 0.98206 1.00364 1.21011 1.00464 0.94679 0.98704 1.20717 0.96654 0.94147 0.95658 1.17949 0.96140 0.94142 0.88783 1.21249 1.05329 1.22929 1.06051 0.93859 1.25819 0.98346 0.98722 0.96166 1.70059 1.30345 1.42718 1.13783 0.85457 0.79082 0.78665 0.78232 1.19555 1.19616 1.20091 0.95162 0.91609 0.87982 0.74054 0.82710 0.90415 0.90297 0.93979 0.91909 0.93131 0.90551 0.91745 0.86108 0.97654 0.97400 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.22 10.80 113.37 1.22 2.44 16 2 O -0.35 -15.54 9.48 -79.64 -0.75 -16.30 16 3 C 0.04 1.73 5.71 22.57 0.13 1.86 16 4 C 0.09 3.01 6.72 22.57 0.15 3.16 16 5 O -0.50 -14.79 13.29 -79.57 -1.06 -15.85 16 6 C -0.14 -4.15 8.64 22.35 0.19 -3.96 16 7 C -0.06 -1.82 4.78 -19.86 -0.09 -1.91 16 8 C -0.06 -1.25 3.09 -11.54 -0.04 -1.29 16 9 C -0.14 -2.83 9.01 71.98 0.65 -2.18 16 10 C -0.14 -2.42 9.01 71.98 0.65 -1.77 16 11 C -0.13 -5.13 9.30 22.27 0.21 -4.92 16 12 C -0.07 -3.31 5.08 -19.79 -0.10 -3.41 16 13 C 0.07 3.71 4.82 29.10 0.14 3.85 16 14 C -0.52 -31.23 9.09 25.60 0.23 -31.00 16 15 H 0.04 2.66 7.74 -2.91 -0.02 2.64 16 16 C 0.01 0.43 5.46 84.66 0.46 0.90 16 17 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 18 Si 0.96 46.39 29.54 68.60 2.03 48.41 16 19 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H 0.03 1.11 7.16 -2.39 -0.02 1.10 16 23 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 25 H 0.40 7.49 9.07 -74.05 -0.67 6.82 16 26 H 0.16 3.54 7.09 -2.91 -0.02 3.52 16 27 H 0.08 1.79 7.87 -2.39 -0.02 1.78 16 28 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.17 7.38 -2.39 -0.02 1.15 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.06 1.02 7.38 -2.39 -0.02 1.01 16 34 H 0.12 4.66 7.94 -2.91 -0.02 4.64 16 35 H 0.01 0.30 8.05 -2.39 -0.02 0.28 16 36 H 0.01 0.46 6.41 -2.38 -0.02 0.45 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -72.89 311.67 4.69 -68.19 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.39 Total: 10.60 kcal Atomic # 6 Polarization: -42.04 SS G_CDS: 3.81 Total: -38.24 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.28 Total: -56.82 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -1.81 Total: -32.15 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -72.89 4.69 -68.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260320498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.859 kcal (2) G-P(sol) polarization free energy of solvation -72.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds