Wall clock time and date at job start Mon Mar 30 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47180 * 2 1 4 4 C 1.34769 * 125.75855 * 89.99957 * 3 2 1 5 5 C 1.40650 * 106.63992 * 179.97438 * 4 3 2 6 6 C 1.34886 * 107.15937 * 0.05580 * 5 4 3 7 7 O 1.33828 * 108.29877 * 359.91838 * 6 5 4 8 8 C 1.50926 * 123.89971 * 179.81874 * 6 5 4 9 9 C 1.53329 * 108.43339 * 343.32613 * 8 6 5 10 10 C 1.53121 * 109.54403 * 50.02162 * 9 8 6 11 11 H 1.09000 * 109.48719 * 50.00298 * 10 9 8 12 12 C 1.52994 * 109.47969 * 170.03265 * 10 9 8 13 13 C 1.50637 * 128.27905 * 180.02562 * 5 4 3 14 14 O 1.42896 * 109.68214 * 283.34933 * 13 5 4 15 15 C 1.50693 * 109.71637 * 43.88777 * 13 5 4 16 16 H 1.08002 * 120.00157 * 243.55320 * 15 13 5 17 17 C 1.37878 * 120.00309 * 63.54798 * 15 13 5 18 18 N 1.31513 * 120.00384 * 186.04409 * 17 15 13 19 19 Si 1.86798 * 119.99756 * 6.04539 * 17 15 13 20 20 H 1.48496 * 109.47109 * 84.40300 * 19 17 15 21 21 H 1.48500 * 109.47242 * 204.40901 * 19 17 15 22 22 H 1.48506 * 109.47176 * 324.40559 * 19 17 15 23 23 H 1.08997 * 109.47049 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46990 * 299.99911 * 1 2 3 25 25 H 1.09001 * 109.47132 * 59.99781 * 1 2 3 26 26 H 1.08998 * 109.46990 * 240.00089 * 2 1 3 27 27 H 1.09001 * 109.47132 * 120.00219 * 2 1 3 28 28 H 1.08003 * 126.67930 * 359.97438 * 4 3 2 29 29 H 1.09010 * 109.66924 * 103.03720 * 8 6 5 30 30 H 1.08998 * 109.67669 * 223.56041 * 8 6 5 31 31 H 1.08998 * 109.44447 * 290.00288 * 9 8 6 32 32 H 1.09001 * 109.46089 * 170.04892 * 9 8 6 33 33 H 1.08999 * 109.47207 * 179.97438 * 12 10 9 34 34 H 1.08994 * 109.47259 * 299.94341 * 12 10 9 35 35 H 1.09004 * 109.47134 * 59.94509 * 12 10 9 36 36 H 0.96703 * 114.00315 * 56.10089 * 14 13 5 37 37 H 0.96998 * 119.99824 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2949 2.1633 1.0936 5 6 2.7385 3.4160 0.6330 6 6 2.7222 3.3728 -0.7151 7 8 2.2948 2.1618 -1.0916 8 6 3.1265 4.5273 -1.5992 9 6 3.1335 5.8063 -0.7536 10 6 3.9367 5.5685 0.5282 11 1 4.9021 5.1295 0.2762 12 6 4.1544 6.9006 1.2484 13 6 3.1622 4.6122 1.4446 14 8 2.0077 5.2736 1.9658 15 6 4.0485 4.1683 2.5797 16 1 3.7295 4.3111 3.6016 17 6 5.2666 3.5796 2.3137 18 7 5.9866 3.0849 3.2968 19 14 5.8942 3.4848 0.5569 20 1 6.5780 4.7554 0.2062 21 1 6.8521 2.3567 0.4336 22 1 4.7514 3.2666 -0.3660 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.1859 1.8562 2.1233 29 1 4.1234 4.3490 -2.0026 30 1 2.4127 4.6312 -2.4164 31 1 2.1095 6.0763 -0.4956 32 1 3.5899 6.6158 -1.3232 33 1 4.7258 6.7311 2.1610 34 1 4.7040 7.5802 0.5972 35 1 3.1889 7.3397 1.5000 36 1 1.4317 4.7028 2.4926 37 1 6.8433 2.6705 3.1095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260335223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:54 Heat of formation + Delta-G solvation = -32.408176 kcal Electronic energy + Delta-G solvation = -19798.379213 eV Core-core repulsion = 16928.545217 eV Total energy + Delta-G solvation = -2869.833995 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.09469 -38.03144 -34.47073 -33.66237 -32.52980 -31.78879 -30.46094 -27.86412 -26.08948 -24.17654 -23.27268 -21.19786 -20.52554 -20.26610 -18.66727 -16.85713 -16.15399 -15.64945 -15.24669 -14.44434 -14.27012 -14.11577 -13.61409 -13.20166 -13.08338 -12.60293 -12.41358 -12.28984 -12.08222 -12.01106 -11.50955 -11.40030 -11.30613 -11.06964 -10.85508 -10.79663 -10.51592 -10.17848 -9.85578 -9.54729 -9.09167 -8.73401 -8.55085 -8.39333 -7.26441 -6.14716 -4.16542 2.38133 3.24931 3.37028 3.43276 3.48467 3.50980 4.40327 5.00745 5.12454 5.19616 5.32592 5.42450 5.43706 5.54227 5.63433 5.78062 5.84930 5.90913 5.93810 6.02081 6.08414 6.14224 6.22753 6.27153 6.42225 6.46732 6.61953 6.70680 6.83431 6.93117 7.01032 7.24839 7.25783 7.40581 7.59600 7.95032 8.41951 8.69564 8.96112 9.50953 10.96884 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.011210 C = 0.009753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.794483 B = 2497.165477 C = 2870.267306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 C -0.054 4.054 4 C -0.160 4.160 5 C -0.166 4.166 6 C -0.026 4.026 7 O -0.181 6.181 8 C -0.032 4.032 9 C -0.112 4.112 10 C -0.089 4.089 11 H 0.066 0.934 12 C -0.126 4.126 13 C 0.298 3.702 14 O -0.562 6.562 15 C -0.531 4.531 16 H 0.080 0.920 17 C 0.087 3.913 18 N -0.892 5.892 19 Si 0.843 3.157 20 H -0.280 1.280 21 H -0.305 1.305 22 H -0.219 1.219 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.144 0.856 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.057 0.943 36 H 0.364 0.636 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 -1.293 -8.287 11.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.103 4.103 4 C -0.179 4.179 5 C -0.168 4.168 6 C -0.076 4.076 7 O -0.079 6.079 8 C -0.069 4.069 9 C -0.150 4.150 10 C -0.107 4.107 11 H 0.083 0.917 12 C -0.183 4.183 13 C 0.258 3.742 14 O -0.367 6.367 15 C -0.569 4.569 16 H 0.098 0.902 17 C -0.117 4.117 18 N -0.529 5.529 19 Si 0.674 3.326 20 H -0.208 1.208 21 H -0.234 1.234 22 H -0.143 1.143 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.162 0.838 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.210 0.790 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.494 -0.970 -8.835 11.625 hybrid contribution 0.618 -0.757 -0.374 1.047 sum -6.876 -1.727 -9.209 11.622 Atomic orbital electron populations 1.21779 0.94664 1.01485 1.02484 1.19912 0.95735 0.88222 1.03302 1.22243 1.08609 0.95067 0.84389 1.21206 1.04041 0.93877 0.98825 1.21478 1.03327 0.98978 0.93011 1.22112 1.05070 0.85532 0.94895 1.83703 1.66341 1.22696 1.35136 1.20209 1.00858 0.89738 0.96116 1.21706 1.02077 0.94864 0.96323 1.21588 0.97845 0.97548 0.93730 0.91658 1.21517 1.01383 0.95055 1.00363 1.17488 0.83304 0.83594 0.89856 1.86303 1.37628 1.41039 1.71681 1.21344 1.02328 1.39956 0.93228 0.90171 1.24838 0.96466 0.93726 0.96638 1.69895 1.13256 1.37920 1.31788 0.87718 0.80568 0.76168 0.88138 1.20790 1.23362 1.14333 0.92301 0.92155 0.92664 0.91003 0.89328 0.83819 0.90782 0.90903 0.90745 0.91688 0.91498 0.94880 0.92367 0.79048 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.90 37.16 0.37 -1.37 16 2 C -0.03 -0.49 6.47 -27.88 -0.18 -0.67 16 3 C -0.05 -1.02 6.58 -35.54 -0.23 -1.26 16 4 C -0.16 -3.38 10.39 -39.90 -0.41 -3.79 16 5 C -0.17 -3.70 3.12 -104.93 -0.33 -4.03 16 6 C -0.03 -0.55 5.30 -35.39 -0.19 -0.74 16 7 O -0.18 -3.68 10.65 6.37 0.07 -3.61 16 8 C -0.03 -0.57 5.82 -27.60 -0.16 -0.73 16 9 C -0.11 -2.02 5.18 -26.50 -0.14 -2.16 16 10 C -0.09 -1.93 1.56 -90.33 -0.14 -2.08 16 11 H 0.07 1.53 2.09 -51.93 -0.11 1.42 16 12 C -0.13 -2.57 8.79 37.15 0.33 -2.24 16 13 C 0.30 6.93 0.52 -92.73 -0.05 6.88 16 14 O -0.56 -12.20 11.56 -35.23 -0.41 -12.61 16 15 C -0.53 -14.50 7.95 -34.44 -0.27 -14.77 16 16 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 17 C 0.09 2.47 5.42 -17.82 -0.10 2.37 16 18 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 19 Si 0.84 21.32 23.45 -169.99 -3.99 17.33 16 20 H -0.28 -6.94 6.78 56.52 0.38 -6.55 16 21 H -0.31 -8.03 7.11 56.52 0.40 -7.63 16 22 H -0.22 -5.18 2.36 56.52 0.13 -5.05 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.14 2.97 8.06 -52.48 -0.42 2.55 16 29 H 0.07 1.28 7.51 -51.92 -0.39 0.90 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.34 7.79 -51.93 -0.40 0.94 16 32 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 33 H 0.07 1.50 7.60 -51.93 -0.39 1.10 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 1.14 7.47 -51.93 -0.39 0.75 16 36 H 0.36 6.99 9.03 45.56 0.41 7.40 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 283.89 15.07 4.28 4.28 Total: -1.00 -31.34 283.89 -5.70 -37.04 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -4.92 Total: 8.43 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -1.51 Total: -24.59 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.77 Total: -26.27 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.34 Total: -16.22 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -3.99 Total: 17.33 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.34 -5.70 -37.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260335223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.634 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds