Wall clock time and date at job start Mon Mar 30 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47180 * 2 1 4 4 C 1.34769 * 125.75855 * 89.99957 * 3 2 1 5 5 C 1.40650 * 106.63992 * 179.97438 * 4 3 2 6 6 C 1.34886 * 107.15937 * 0.05580 * 5 4 3 7 7 O 1.33828 * 108.29877 * 359.91838 * 6 5 4 8 8 C 1.50926 * 123.89971 * 179.81874 * 6 5 4 9 9 C 1.53329 * 108.43339 * 343.32613 * 8 6 5 10 10 C 1.53121 * 109.54403 * 50.02162 * 9 8 6 11 11 H 1.09000 * 109.48719 * 50.00298 * 10 9 8 12 12 C 1.52994 * 109.47969 * 170.03265 * 10 9 8 13 13 C 1.50637 * 128.27905 * 180.02562 * 5 4 3 14 14 O 1.42896 * 109.68214 * 283.34933 * 13 5 4 15 15 C 1.50693 * 109.71637 * 43.88777 * 13 5 4 16 16 H 1.08002 * 120.00157 * 243.55320 * 15 13 5 17 17 C 1.37878 * 120.00309 * 63.54798 * 15 13 5 18 18 N 1.31513 * 120.00384 * 186.04409 * 17 15 13 19 19 Si 1.86798 * 119.99756 * 6.04539 * 17 15 13 20 20 H 1.48496 * 109.47109 * 84.40300 * 19 17 15 21 21 H 1.48500 * 109.47242 * 204.40901 * 19 17 15 22 22 H 1.48506 * 109.47176 * 324.40559 * 19 17 15 23 23 H 1.08997 * 109.47049 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46990 * 299.99911 * 1 2 3 25 25 H 1.09001 * 109.47132 * 59.99781 * 1 2 3 26 26 H 1.08998 * 109.46990 * 240.00089 * 2 1 3 27 27 H 1.09001 * 109.47132 * 120.00219 * 2 1 3 28 28 H 1.08003 * 126.67930 * 359.97438 * 4 3 2 29 29 H 1.09010 * 109.66924 * 103.03720 * 8 6 5 30 30 H 1.08998 * 109.67669 * 223.56041 * 8 6 5 31 31 H 1.08998 * 109.44447 * 290.00288 * 9 8 6 32 32 H 1.09001 * 109.46089 * 170.04892 * 9 8 6 33 33 H 1.08999 * 109.47207 * 179.97438 * 12 10 9 34 34 H 1.08994 * 109.47259 * 299.94341 * 12 10 9 35 35 H 1.09004 * 109.47134 * 59.94509 * 12 10 9 36 36 H 0.96703 * 114.00315 * 56.10089 * 14 13 5 37 37 H 0.96998 * 119.99824 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2949 2.1633 1.0936 5 6 2.7385 3.4160 0.6330 6 6 2.7222 3.3728 -0.7151 7 8 2.2948 2.1618 -1.0916 8 6 3.1265 4.5273 -1.5992 9 6 3.1335 5.8063 -0.7536 10 6 3.9367 5.5685 0.5282 11 1 4.9021 5.1295 0.2762 12 6 4.1544 6.9006 1.2484 13 6 3.1622 4.6122 1.4446 14 8 2.0077 5.2736 1.9658 15 6 4.0485 4.1683 2.5797 16 1 3.7295 4.3111 3.6016 17 6 5.2666 3.5796 2.3137 18 7 5.9866 3.0849 3.2968 19 14 5.8942 3.4848 0.5569 20 1 6.5780 4.7554 0.2062 21 1 6.8521 2.3567 0.4336 22 1 4.7514 3.2666 -0.3660 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.1859 1.8562 2.1233 29 1 4.1234 4.3490 -2.0026 30 1 2.4127 4.6312 -2.4164 31 1 2.1095 6.0763 -0.4956 32 1 3.5899 6.6158 -1.3232 33 1 4.7258 6.7311 2.1610 34 1 4.7040 7.5802 0.5972 35 1 3.1889 7.3397 1.5000 36 1 1.4317 4.7028 2.4926 37 1 6.8433 2.6705 3.1095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260335223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:54 Heat of formation + Delta-G solvation = -54.507277 kcal Electronic energy + Delta-G solvation = -19799.337502 eV Core-core repulsion = 16928.545217 eV Total energy + Delta-G solvation = -2870.792284 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.67093 -39.71534 -36.03893 -34.98933 -34.59219 -33.37767 -32.04689 -29.54351 -27.72866 -25.84141 -24.63583 -22.79835 -22.14486 -21.84362 -20.32320 -18.89249 -17.68227 -17.25703 -17.01114 -16.04486 -16.01593 -15.31705 -15.15409 -14.74715 -14.66353 -14.40886 -14.17560 -13.74478 -13.51620 -13.35262 -13.16775 -12.99375 -12.89856 -12.46422 -12.37141 -12.23855 -12.07642 -11.91802 -11.63395 -11.27388 -10.88455 -10.64231 -10.46786 -10.19876 -8.84291 -8.35977 -6.40077 0.81822 1.22101 1.35120 1.44716 1.81063 2.02163 2.30679 3.00724 3.63234 3.77742 3.95843 4.01739 4.11999 4.20945 4.26374 4.39768 4.41054 4.55959 4.60355 4.67796 4.76170 4.92084 4.93777 4.99236 5.00997 5.11131 5.12533 5.22270 5.30886 5.37106 5.44941 5.53224 5.62006 5.65283 5.77641 6.18894 6.40877 6.58009 7.04156 7.35615 8.79025 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.011210 C = 0.009753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.794483 B = 2497.165477 C = 2870.267306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.037 4.037 3 C -0.037 4.037 4 C -0.197 4.197 5 C -0.193 4.193 6 C -0.031 4.031 7 O -0.181 6.181 8 C -0.036 4.036 9 C -0.105 4.105 10 C -0.098 4.098 11 H 0.051 0.949 12 C -0.123 4.123 13 C 0.299 3.701 14 O -0.563 6.563 15 C -0.524 4.524 16 H 0.035 0.965 17 C 0.035 3.965 18 N -0.943 5.943 19 Si 0.895 3.105 20 H -0.269 1.269 21 H -0.323 1.323 22 H -0.190 1.190 23 H 0.088 0.912 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.372 0.628 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 -1.182 -11.708 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.075 4.075 3 C -0.086 4.086 4 C -0.216 4.216 5 C -0.195 4.195 6 C -0.081 4.081 7 O -0.078 6.078 8 C -0.073 4.073 9 C -0.142 4.142 10 C -0.116 4.116 11 H 0.068 0.932 12 C -0.180 4.180 13 C 0.259 3.741 14 O -0.368 6.368 15 C -0.562 4.562 16 H 0.053 0.947 17 C -0.163 4.163 18 N -0.582 5.582 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.253 1.253 22 H -0.113 1.113 23 H 0.107 0.893 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.150 0.850 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.218 0.782 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.731 -0.837 -12.263 15.077 hybrid contribution 0.880 -0.807 0.836 1.457 sum -7.851 -1.644 -11.428 13.962 Atomic orbital electron populations 1.21739 0.92665 1.03339 1.02033 1.20186 0.97346 0.85312 1.04613 1.23005 1.06003 0.96325 0.83303 1.21275 1.06409 0.94690 0.99208 1.21367 1.05258 0.98809 0.94059 1.22663 1.04244 0.86381 0.94780 1.83746 1.66107 1.22630 1.35344 1.20444 1.02447 0.87930 0.96472 1.21679 1.01614 0.96329 0.94583 1.21596 0.97310 0.97168 0.95559 0.93165 1.21482 1.01589 0.95427 0.99509 1.17357 0.82962 0.84862 0.88967 1.86263 1.37331 1.41370 1.71866 1.21587 1.02890 1.38813 0.92900 0.94662 1.25543 0.96773 0.93656 1.00342 1.70045 1.13908 1.40206 1.34072 0.86938 0.80375 0.75786 0.84478 1.19597 1.25293 1.11265 0.89330 0.92934 0.92790 0.89158 0.88534 0.84987 0.89682 0.87233 0.90665 0.87997 0.94927 0.91581 0.91864 0.78176 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.90 71.98 0.71 -2.20 16 2 C -0.04 -0.96 6.47 29.85 0.19 -0.76 16 3 C -0.04 -1.33 6.58 24.89 0.16 -1.17 16 4 C -0.20 -8.27 10.39 22.06 0.23 -8.04 16 5 C -0.19 -8.42 3.12 -20.07 -0.06 -8.48 16 6 C -0.03 -1.19 5.30 24.99 0.13 -1.06 16 7 O -0.18 -6.80 10.65 -0.13 0.00 -6.80 16 8 C -0.04 -1.12 5.82 30.03 0.17 -0.94 16 9 C -0.10 -3.33 5.18 30.75 0.16 -3.17 16 10 C -0.10 -4.06 1.56 -10.61 -0.02 -4.08 16 11 H 0.05 2.25 2.09 -2.39 -0.01 2.24 16 12 C -0.12 -4.82 8.79 71.98 0.63 -4.18 16 13 C 0.30 13.87 0.52 -12.16 -0.01 13.86 16 14 O -0.56 -24.50 11.56 -148.98 -1.72 -26.22 16 15 C -0.52 -29.78 7.95 25.60 0.20 -29.58 16 16 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 17 C 0.04 2.06 5.42 84.66 0.46 2.52 16 18 N -0.94 -59.88 13.96 21.45 0.30 -59.58 16 19 Si 0.89 44.32 23.45 68.60 1.61 45.93 16 20 H -0.27 -12.69 6.78 99.48 0.67 -12.02 16 21 H -0.32 -16.79 7.11 99.48 0.71 -16.08 16 22 H -0.19 -8.47 2.36 99.48 0.23 -8.23 16 23 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.13 5.70 8.06 -2.91 -0.02 5.68 16 29 H 0.08 2.49 7.51 -2.38 -0.02 2.47 16 30 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.07 2.40 7.79 -2.39 -0.02 2.38 16 32 H 0.10 2.53 8.11 -2.39 -0.02 2.51 16 33 H 0.03 1.46 7.60 -2.39 -0.02 1.44 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.06 2.37 7.47 -2.38 -0.02 2.35 16 36 H 0.37 14.64 9.03 -74.06 -0.67 13.97 16 37 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -70.36 283.89 3.06 -67.30 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -0.10 Total: 26.65 kcal Atomic # 6 Polarization: -50.26 SS G_CDS: 2.97 Total: -47.28 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.30 Total: -59.58 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.72 Total: -33.02 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.61 Total: 45.93 kcal Total: -70.36 3.06 -67.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260335223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.793 kcal (2) G-P(sol) polarization free energy of solvation -70.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds