Wall clock time and date at job start Mon Mar 30 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47661 * 2 1 4 4 C 1.34772 * 125.75620 * 89.99712 * 3 2 1 5 5 C 1.40648 * 106.63843 * 180.02562 * 4 3 2 6 6 C 1.34892 * 107.16038 * 359.94979 * 5 4 3 7 7 O 1.33833 * 108.29744 * 0.07305 * 6 5 4 8 8 C 1.50929 * 123.90203 * 180.16917 * 6 5 4 9 9 C 1.53340 * 108.42710 * 16.69861 * 8 6 5 10 10 C 1.53170 * 109.56520 * 309.96924 * 9 8 6 11 11 H 1.09000 * 109.46037 * 310.00104 * 10 9 8 12 12 C 1.53002 * 109.53134 * 189.95194 * 10 9 8 13 13 C 1.50639 * 128.28202 * 179.97438 * 5 4 3 14 14 O 1.42900 * 109.68411 * 76.62622 * 13 5 4 15 15 C 1.50700 * 109.68173 * 316.10948 * 13 5 4 16 16 H 1.07999 * 119.99786 * 122.17561 * 15 13 5 17 17 C 1.37876 * 119.99801 * 302.17572 * 15 13 5 18 18 N 1.31507 * 120.00385 * 6.27007 * 17 15 13 19 19 Si 1.86807 * 119.99625 * 186.26680 * 17 15 13 20 20 H 1.48505 * 109.46985 * 90.00282 * 19 17 15 21 21 H 1.48501 * 109.47009 * 209.99918 * 19 17 15 22 22 H 1.48501 * 109.47216 * 330.00342 * 19 17 15 23 23 H 1.08993 * 109.47270 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46699 * 300.00292 * 1 2 3 25 25 H 1.09005 * 109.46643 * 59.99653 * 1 2 3 26 26 H 1.09003 * 109.47210 * 239.99828 * 2 1 3 27 27 H 1.09006 * 109.47315 * 120.00684 * 2 1 3 28 28 H 1.07989 * 126.68084 * 0.02562 * 4 3 2 29 29 H 1.09001 * 109.67767 * 136.43455 * 8 6 5 30 30 H 1.09006 * 109.66808 * 256.92944 * 8 6 5 31 31 H 1.08987 * 109.45981 * 69.98181 * 9 8 6 32 32 H 1.08998 * 109.45913 * 189.95641 * 9 8 6 33 33 H 1.09006 * 109.47252 * 300.06225 * 12 10 9 34 34 H 1.09004 * 109.46828 * 60.06083 * 12 10 9 35 35 H 1.08991 * 109.47461 * 180.02562 * 12 10 9 36 36 H 0.96697 * 113.99671 * 299.48620 * 14 13 5 37 37 H 0.97006 * 120.00641 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2950 2.1632 1.0937 5 6 2.7375 3.4163 0.6331 6 6 2.7229 3.3725 -0.7151 7 8 2.2942 2.1619 -1.0916 8 6 3.1340 4.5246 -1.5992 9 6 3.9330 5.5235 -0.7535 10 6 3.1593 5.8439 0.5290 11 1 2.1327 6.1095 0.2770 12 6 3.8275 7.0163 1.2501 13 6 3.1599 4.6130 1.4447 14 8 4.4733 4.4014 1.9664 15 6 2.1909 4.8243 2.5794 16 1 2.5461 4.8265 3.5993 17 6 0.8512 5.0147 2.3154 18 7 0.3987 4.8899 1.0870 19 14 -0.3214 5.4501 3.7029 20 1 -0.3941 6.9266 3.8446 21 1 -1.6722 4.9153 3.3956 22 1 0.1700 4.8548 4.9715 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5140 0.8900 28 1 2.1866 1.8559 2.1232 29 1 3.7545 4.1569 -2.4164 30 1 2.2466 5.0120 -2.0030 31 1 4.8990 5.0898 -0.4956 32 1 4.0868 6.4401 -1.3230 33 1 4.8544 6.7506 1.5015 34 1 3.8274 7.8908 0.5993 35 1 3.2766 7.2432 2.1627 36 1 4.5461 3.6325 2.5482 37 1 -0.5439 5.0242 0.9011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260335233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:01 Heat of formation + Delta-G solvation = -71.334099 kcal Electronic energy + Delta-G solvation = -19690.896944 eV Core-core repulsion = 16819.374994 eV Total energy + Delta-G solvation = -2871.521950 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.24910 -39.27458 -35.77496 -34.88249 -34.43096 -33.03307 -31.65798 -29.01882 -27.52984 -25.86535 -24.59673 -22.70736 -21.83728 -21.31947 -19.70521 -18.81906 -17.38612 -16.90012 -16.71675 -16.12757 -15.46175 -15.26764 -14.91787 -14.69438 -14.44241 -14.14288 -13.81362 -13.59759 -13.43022 -13.02786 -12.89125 -12.83639 -12.76089 -12.37114 -12.33607 -12.14810 -11.99998 -11.88705 -11.46748 -11.30842 -11.00256 -10.43949 -10.24980 -9.97254 -8.66833 -7.98812 -6.18593 1.15756 1.37457 1.40978 1.47517 2.18898 2.29558 2.42838 3.22234 3.86077 4.07412 4.18089 4.24052 4.24849 4.42582 4.46309 4.49089 4.65401 4.77019 4.79323 4.84496 4.93872 4.97722 5.03512 5.09831 5.22299 5.24724 5.32340 5.37667 5.48448 5.63519 5.66510 5.73718 5.86235 6.11807 6.13164 6.31733 6.67060 6.72811 7.29938 7.56736 8.95800 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.012179 C = 0.008445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.497589 B = 2298.431083 C = 3314.842901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 C -0.050 4.050 4 C -0.193 4.193 5 C -0.130 4.130 6 C -0.057 4.057 7 O -0.194 6.194 8 C -0.019 4.019 9 C -0.102 4.102 10 C -0.076 4.076 11 H 0.072 0.928 12 C -0.118 4.118 13 C 0.309 3.691 14 O -0.579 6.579 15 C -0.550 4.550 16 H 0.048 0.952 17 C 0.042 3.958 18 N -0.880 5.880 19 Si 0.935 3.065 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.274 1.274 23 H 0.092 0.908 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.035 0.965 36 H 0.366 0.634 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 -5.094 -3.785 6.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.100 4.100 4 C -0.213 4.213 5 C -0.132 4.132 6 C -0.106 4.106 7 O -0.093 6.093 8 C -0.056 4.056 9 C -0.139 4.139 10 C -0.094 4.094 11 H 0.090 0.910 12 C -0.175 4.175 13 C 0.270 3.730 14 O -0.384 6.384 15 C -0.589 4.589 16 H 0.066 0.934 17 C -0.160 4.160 18 N -0.516 5.516 19 Si 0.762 3.238 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.199 1.199 23 H 0.111 0.889 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.109 0.891 27 H 0.122 0.878 28 H 0.145 0.855 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.212 0.788 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.634 -4.625 -4.548 7.001 hybrid contribution -1.297 -0.094 1.478 1.969 sum 1.337 -4.719 -3.069 5.786 Atomic orbital electron populations 1.21727 0.94203 1.02850 1.01121 1.20085 0.96120 0.85754 1.04688 1.22886 1.06954 0.96425 0.83700 1.21144 1.06644 0.95037 0.98430 1.21019 1.01980 0.96819 0.93357 1.22524 1.06702 0.86024 0.95338 1.83658 1.66933 1.23065 1.35614 1.20077 0.99840 0.89814 0.95904 1.21613 0.98077 0.98226 0.96024 1.21147 0.99528 0.95087 0.93687 0.90970 1.21472 0.99849 0.96751 0.99457 1.17262 0.78501 0.87790 0.89489 1.86287 1.32607 1.51762 1.67763 1.21687 0.93157 1.51150 0.92857 0.93420 1.25334 0.98978 0.94766 0.96935 1.70100 1.14149 1.47734 1.19654 0.85931 0.78707 0.78465 0.80725 1.20371 1.21437 1.19887 0.88940 0.94209 0.93968 0.89139 0.87774 0.85502 0.89277 0.91051 0.92347 0.89591 0.93247 0.92794 0.94583 0.78797 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.89 71.98 0.71 -3.24 16 2 C -0.03 -0.86 6.47 29.85 0.19 -0.66 16 3 C -0.05 -2.07 6.58 24.89 0.16 -1.90 16 4 C -0.19 -8.87 10.39 22.06 0.23 -8.64 16 5 C -0.13 -6.29 3.52 -20.06 -0.07 -6.36 16 6 C -0.06 -2.61 7.22 24.99 0.18 -2.43 16 7 O -0.19 -8.64 10.65 -0.15 0.00 -8.64 16 8 C -0.02 -0.75 6.30 30.03 0.19 -0.56 16 9 C -0.10 -3.90 5.19 30.76 0.16 -3.74 16 10 C -0.08 -3.44 1.87 -10.60 -0.02 -3.46 16 11 H 0.07 3.73 6.22 -2.39 -0.01 3.71 16 12 C -0.12 -4.90 8.80 71.98 0.63 -4.26 16 13 C 0.31 15.12 0.52 -12.16 -0.01 15.11 16 14 O -0.58 -26.55 11.55 -148.98 -1.72 -28.27 16 15 C -0.55 -29.27 7.31 25.60 0.19 -29.09 16 16 H 0.05 2.59 7.82 -2.91 -0.02 2.56 16 17 C 0.04 2.24 5.06 84.66 0.43 2.67 16 18 N -0.88 -48.19 10.51 21.45 0.23 -47.97 16 19 Si 0.93 43.00 29.54 68.60 2.03 45.02 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 23 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 25 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 28 H 0.13 5.71 8.06 -2.92 -0.02 5.69 16 29 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 31 H 0.06 2.26 7.79 -2.39 -0.02 2.24 16 32 H 0.09 2.74 8.12 -2.39 -0.02 2.72 16 33 H 0.05 1.99 7.47 -2.38 -0.02 1.97 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.03 1.60 7.60 -2.39 -0.02 1.58 16 36 H 0.37 15.04 9.04 -74.06 -0.67 14.37 16 37 H 0.26 13.70 8.31 -92.70 -0.77 12.93 16 Total: -1.00 -62.06 298.26 3.90 -58.16 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.39 Total: 28.26 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 2.98 Total: -46.57 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.23 Total: -47.97 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.72 Total: -36.91 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -62.06 3.90 -58.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260335233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.175 kcal (2) G-P(sol) polarization free energy of solvation -62.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds