Wall clock time and date at job start Mon Mar 30 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.47195 * 2 1 4 4 C 1.34760 * 125.75919 * 89.98158 * 3 2 1 5 5 C 1.40647 * 106.64204 * 180.02562 * 4 3 2 6 6 C 1.34896 * 107.15485 * 0.05658 * 5 4 3 7 7 O 1.33823 * 108.29948 * 359.91305 * 6 5 4 8 8 C 1.50931 * 123.89280 * 179.91299 * 6 5 4 9 9 O 1.42901 * 109.67219 * 103.07518 * 8 6 5 10 10 C 1.50706 * 109.67209 * 223.56659 * 8 6 5 11 11 H 1.07998 * 119.99629 * 119.50559 * 10 8 6 12 12 C 1.37875 * 119.99955 * 299.51131 * 10 8 6 13 13 N 1.31515 * 119.99932 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99908 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47295 * 59.99168 * 14 12 10 16 16 H 1.48500 * 109.47035 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46845 * 299.99264 * 14 12 10 18 18 C 1.53337 * 108.46441 * 343.31972 * 8 6 5 19 19 H 1.08994 * 109.45910 * 289.99988 * 18 8 6 20 20 C 1.52999 * 109.46279 * 170.03749 * 18 8 6 21 21 C 1.53162 * 109.51739 * 49.99138 * 18 8 6 22 22 C 1.50635 * 128.28290 * 180.16478 * 5 4 3 23 23 H 1.08997 * 109.46940 * 59.99839 * 1 2 3 24 24 H 1.08995 * 109.46549 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46851 * 300.00006 * 1 2 3 26 26 H 1.08998 * 109.47285 * 239.99743 * 2 1 3 27 27 H 1.09001 * 109.47326 * 119.99533 * 2 1 3 28 28 H 1.08006 * 126.68204 * 0.06996 * 4 3 2 29 29 H 0.96704 * 114.00216 * 60.49860 * 9 8 6 30 30 H 0.97003 * 119.99476 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.47063 * 60.00059 * 20 18 8 32 32 H 1.08996 * 109.47424 * 180.02562 * 20 18 8 33 33 H 1.09001 * 109.46759 * 300.00333 * 20 18 8 34 34 H 1.08995 * 109.47065 * 170.05312 * 21 18 8 35 35 H 1.09006 * 109.47596 * 50.04172 * 21 18 8 36 36 H 1.08999 * 109.68530 * 283.23978 * 22 5 4 37 37 H 1.09005 * 109.68362 * 43.79628 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2946 2.1635 1.0936 5 6 2.7371 3.4165 0.6329 6 6 2.7206 3.3733 -0.7152 7 8 2.2941 2.1621 -1.0917 8 6 3.1258 4.5276 -1.5993 9 8 4.4320 4.2923 -2.1290 10 6 2.1388 4.6723 -2.7289 11 1 1.5775 5.5880 -2.8415 12 6 1.9524 3.6355 -3.6186 13 7 2.6364 2.5206 -3.4816 14 14 0.7285 3.8146 -5.0183 15 1 1.1240 4.9588 -5.8784 16 1 0.7157 2.5692 -5.8270 17 1 -0.6268 4.0584 -4.4626 18 6 3.1342 5.8070 -0.7541 19 1 2.1106 6.0784 -0.4961 20 6 3.7761 6.9422 -1.5542 21 6 3.9371 5.5680 0.5281 22 6 3.1629 4.6120 1.4445 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.1866 1.8560 2.1233 29 1 4.4995 3.4928 -2.6687 30 1 2.5055 1.7914 -4.1078 31 1 3.2038 7.1128 -2.4661 32 1 3.7825 7.8517 -0.9534 33 1 4.7995 6.6708 -1.8130 34 1 4.0931 6.5168 1.0412 35 1 4.9021 5.1281 0.2760 36 1 2.2832 5.1174 1.8430 37 1 3.8045 4.2894 2.2645 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260341887.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:04 Heat of formation + Delta-G solvation = -54.329211 kcal Electronic energy + Delta-G solvation = -19678.121762 eV Core-core repulsion = 16807.337199 eV Total energy + Delta-G solvation = -2870.784563 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.46636 -37.43977 -34.38973 -33.41744 -32.10342 -31.70956 -29.11694 -28.20459 -25.72014 -24.30372 -22.84949 -21.61082 -20.16182 -19.24872 -17.81037 -16.94818 -16.02427 -14.97829 -14.80143 -14.37640 -13.94021 -13.78404 -13.51932 -12.95070 -12.76222 -12.46580 -12.18667 -11.89846 -11.68282 -11.61567 -11.28830 -11.18402 -11.00531 -10.95597 -10.61574 -10.48947 -10.42224 -10.29367 -9.86861 -9.81298 -9.36116 -8.59845 -8.45481 -8.28218 -7.01449 -6.19741 -4.30338 2.96085 3.24923 3.29084 3.32050 3.63471 4.16652 4.30910 5.09440 5.32025 5.48584 5.61582 5.68121 5.72125 5.74000 5.94617 5.97806 6.10087 6.14140 6.23100 6.25277 6.32992 6.41702 6.48689 6.52751 6.56371 6.63029 6.72469 6.81137 7.03934 7.15960 7.18691 7.36784 7.51179 7.67799 7.80117 8.01400 8.59145 8.75293 9.32836 9.43910 10.84403 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.013672 C = 0.008041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.675339 B = 2047.528287 C = 3481.158833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C -0.064 4.064 4 C -0.211 4.211 5 C -0.241 4.241 6 C 0.048 3.952 7 O -0.095 6.095 8 C 0.327 3.673 9 O -0.576 6.576 10 C -0.546 4.546 11 H 0.066 0.934 12 C 0.075 3.925 13 N -0.867 5.867 14 Si 0.899 3.101 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.063 4.063 19 H 0.068 0.932 20 C -0.127 4.127 21 C -0.116 4.116 22 C -0.037 4.037 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.125 0.875 29 H 0.382 0.618 30 H 0.269 0.731 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 -0.928 6.213 6.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.070 4.070 3 C -0.116 4.116 4 C -0.230 4.230 5 C -0.243 4.243 6 C -0.007 4.007 7 O 0.014 5.986 8 C 0.287 3.713 9 O -0.385 6.385 10 C -0.584 4.584 11 H 0.084 0.916 12 C -0.130 4.130 13 N -0.505 5.505 14 Si 0.726 3.274 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.081 4.081 19 H 0.086 0.914 20 C -0.185 4.185 21 C -0.153 4.153 22 C -0.074 4.074 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.143 0.857 29 H 0.233 0.767 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.676 -0.670 6.138 6.211 hybrid contribution -0.968 -0.687 -0.714 1.385 sum -1.643 -1.357 5.423 5.827 Atomic orbital electron populations 1.21756 0.95070 1.01041 1.02469 1.19806 0.95507 0.89072 1.02610 1.22406 1.07668 0.95423 0.86079 1.20904 1.09374 0.94839 0.97901 1.20058 1.13073 0.96927 0.94207 1.24290 0.96743 0.86044 0.93633 1.84490 1.61728 1.21365 1.31062 1.17206 0.82137 0.83558 0.88359 1.86174 1.31759 1.49875 1.70734 1.21554 1.23874 1.01636 1.11287 0.91595 1.25019 0.95693 0.94623 0.97669 1.69580 1.40478 1.04354 1.36107 0.86543 0.81521 0.77558 0.81786 1.19969 1.21110 1.20179 1.21033 0.98688 0.94829 0.93582 0.91357 1.21575 1.01696 0.95567 0.99623 1.21719 0.99741 0.97998 0.95850 1.19856 0.98410 0.92853 0.96265 0.92272 0.92681 0.92729 0.90798 0.90455 0.85677 0.76710 0.92043 0.92205 0.94714 0.92263 0.92833 0.91455 0.92511 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.90 37.16 0.37 -1.83 16 2 C -0.03 -0.55 6.47 -27.88 -0.18 -0.73 16 3 C -0.06 -1.39 6.58 -35.54 -0.23 -1.62 16 4 C -0.21 -4.42 10.79 -39.91 -0.43 -4.85 16 5 C -0.24 -5.45 5.95 -104.93 -0.62 -6.07 16 6 C 0.05 1.20 5.90 -35.38 -0.21 1.00 16 7 O -0.10 -2.45 7.85 6.38 0.05 -2.40 16 8 C 0.33 8.19 0.46 -92.63 -0.04 8.14 16 9 O -0.58 -14.84 11.55 -35.23 -0.41 -15.25 16 10 C -0.55 -14.60 7.61 -34.44 -0.26 -14.86 16 11 H 0.07 1.74 7.42 -52.49 -0.39 1.35 16 12 C 0.07 1.98 5.06 -17.82 -0.09 1.89 16 13 N -0.87 -23.20 9.01 55.43 0.50 -22.70 16 14 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 C -0.06 -1.34 1.93 -90.36 -0.17 -1.52 16 19 H 0.07 1.47 8.08 -51.93 -0.42 1.05 16 20 C -0.13 -2.48 8.79 37.16 0.33 -2.16 16 21 C -0.12 -2.20 5.20 -26.44 -0.14 -2.34 16 22 C -0.04 -0.69 6.29 -27.71 -0.17 -0.87 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 29 H 0.38 10.20 7.17 45.56 0.33 10.53 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.06 1.21 7.34 -51.93 -0.38 0.83 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.19 7.48 -51.93 -0.39 0.80 16 34 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 35 H 0.07 1.37 7.78 -51.93 -0.40 0.96 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 295.09 15.07 4.45 4.45 Total: -1.00 -28.34 295.09 -7.31 -35.65 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.02 Total: 10.29 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -1.86 Total: -25.80 kcal Atomic # 7 Polarization: -23.20 SS G_CDS: 0.50 Total: -22.70 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.36 Total: -17.65 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.34 -7.31 -35.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260341887.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.675 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds