Wall clock time and date at job start Mon Mar 30 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.47195 * 2 1 4 4 C 1.34760 * 125.75919 * 89.98158 * 3 2 1 5 5 C 1.40647 * 106.64204 * 180.02562 * 4 3 2 6 6 C 1.34896 * 107.15485 * 0.05658 * 5 4 3 7 7 O 1.33823 * 108.29948 * 359.91305 * 6 5 4 8 8 C 1.50931 * 123.89280 * 179.91299 * 6 5 4 9 9 O 1.42901 * 109.67219 * 103.07518 * 8 6 5 10 10 C 1.50706 * 109.67209 * 223.56659 * 8 6 5 11 11 H 1.07998 * 119.99629 * 119.50559 * 10 8 6 12 12 C 1.37875 * 119.99955 * 299.51131 * 10 8 6 13 13 N 1.31515 * 119.99932 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99908 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47295 * 59.99168 * 14 12 10 16 16 H 1.48500 * 109.47035 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46845 * 299.99264 * 14 12 10 18 18 C 1.53337 * 108.46441 * 343.31972 * 8 6 5 19 19 H 1.08994 * 109.45910 * 289.99988 * 18 8 6 20 20 C 1.52999 * 109.46279 * 170.03749 * 18 8 6 21 21 C 1.53162 * 109.51739 * 49.99138 * 18 8 6 22 22 C 1.50635 * 128.28290 * 180.16478 * 5 4 3 23 23 H 1.08997 * 109.46940 * 59.99839 * 1 2 3 24 24 H 1.08995 * 109.46549 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46851 * 300.00006 * 1 2 3 26 26 H 1.08998 * 109.47285 * 239.99743 * 2 1 3 27 27 H 1.09001 * 109.47326 * 119.99533 * 2 1 3 28 28 H 1.08006 * 126.68204 * 0.06996 * 4 3 2 29 29 H 0.96704 * 114.00216 * 60.49860 * 9 8 6 30 30 H 0.97003 * 119.99476 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.47063 * 60.00059 * 20 18 8 32 32 H 1.08996 * 109.47424 * 180.02562 * 20 18 8 33 33 H 1.09001 * 109.46759 * 300.00333 * 20 18 8 34 34 H 1.08995 * 109.47065 * 170.05312 * 21 18 8 35 35 H 1.09006 * 109.47596 * 50.04172 * 21 18 8 36 36 H 1.08999 * 109.68530 * 283.23978 * 22 5 4 37 37 H 1.09005 * 109.68362 * 43.79628 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2946 2.1635 1.0936 5 6 2.7371 3.4165 0.6329 6 6 2.7206 3.3733 -0.7152 7 8 2.2941 2.1621 -1.0917 8 6 3.1258 4.5276 -1.5993 9 8 4.4320 4.2923 -2.1290 10 6 2.1388 4.6723 -2.7289 11 1 1.5775 5.5880 -2.8415 12 6 1.9524 3.6355 -3.6186 13 7 2.6364 2.5206 -3.4816 14 14 0.7285 3.8146 -5.0183 15 1 1.1240 4.9588 -5.8784 16 1 0.7157 2.5692 -5.8270 17 1 -0.6268 4.0584 -4.4626 18 6 3.1342 5.8070 -0.7541 19 1 2.1106 6.0784 -0.4961 20 6 3.7761 6.9422 -1.5542 21 6 3.9371 5.5680 0.5281 22 6 3.1629 4.6120 1.4445 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.1866 1.8560 2.1233 29 1 4.4995 3.4928 -2.6687 30 1 2.5055 1.7914 -4.1078 31 1 3.2038 7.1128 -2.4661 32 1 3.7825 7.8517 -0.9534 33 1 4.7995 6.6708 -1.8130 34 1 4.0931 6.5168 1.0412 35 1 4.9021 5.1281 0.2760 36 1 2.2832 5.1174 1.8430 37 1 3.8045 4.2894 2.2645 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260341887.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:04 Heat of formation + Delta-G solvation = -70.895266 kcal Electronic energy + Delta-G solvation = -19678.840120 eV Core-core repulsion = 16807.337199 eV Total energy + Delta-G solvation = -2871.502921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.18278 -39.18859 -36.16942 -34.82591 -34.11162 -33.39054 -30.71297 -29.93052 -27.46060 -26.00672 -24.28364 -23.28063 -21.86942 -20.88940 -19.52317 -18.88444 -17.82136 -16.84542 -16.53590 -16.07059 -15.53307 -15.28661 -15.10462 -14.62550 -14.36936 -14.04711 -13.69064 -13.55633 -13.40943 -13.12788 -12.95833 -12.81056 -12.80343 -12.41822 -12.28797 -12.25904 -12.08976 -11.85465 -11.50309 -11.43798 -11.11759 -10.58094 -10.22108 -10.09181 -8.73161 -8.18336 -6.35570 1.23875 1.38116 1.39535 1.45899 1.94881 2.37271 2.56729 3.08259 3.85172 3.98683 4.14214 4.17554 4.29269 4.31119 4.39781 4.42538 4.58320 4.74996 4.77422 4.80558 4.92499 4.93704 4.95610 5.06382 5.09115 5.14426 5.25010 5.29611 5.41394 5.50322 5.57127 5.64731 5.79981 5.83186 6.02284 6.13215 6.63682 6.94533 7.28584 7.38564 8.83324 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.013672 C = 0.008041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.675339 B = 2047.528287 C = 3481.158833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.033 4.033 3 C -0.075 4.075 4 C -0.217 4.217 5 C -0.241 4.241 6 C -0.003 4.003 7 O -0.131 6.131 8 C 0.316 3.684 9 O -0.582 6.582 10 C -0.569 4.569 11 H 0.058 0.942 12 C 0.035 3.965 13 N -0.881 5.881 14 Si 0.952 3.048 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.278 1.278 18 C -0.066 4.066 19 H 0.063 0.937 20 C -0.120 4.120 21 C -0.108 4.108 22 C -0.037 4.037 23 H 0.030 0.970 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.159 0.841 29 H 0.372 0.628 30 H 0.267 0.733 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 -0.952 8.064 8.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 C -0.127 4.127 4 C -0.236 4.236 5 C -0.242 4.242 6 C -0.056 4.056 7 O -0.023 6.023 8 C 0.276 3.724 9 O -0.390 6.390 10 C -0.606 4.606 11 H 0.076 0.924 12 C -0.168 4.168 13 N -0.519 5.519 14 Si 0.778 3.222 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.203 1.203 18 C -0.085 4.085 19 H 0.082 0.918 20 C -0.178 4.178 21 C -0.146 4.146 22 C -0.074 4.074 23 H 0.049 0.951 24 H 0.107 0.893 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.129 0.871 28 H 0.177 0.823 29 H 0.221 0.779 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.196 -0.677 7.999 8.116 hybrid contribution -0.811 -0.728 -1.250 1.658 sum -2.007 -1.405 6.749 7.180 Atomic orbital electron populations 1.21713 0.93688 1.02939 1.01331 1.20050 0.96609 0.86448 1.03912 1.23416 1.06631 0.97074 0.85551 1.21300 1.08919 0.94090 0.99299 1.20624 1.11317 0.98610 0.93661 1.24356 0.99801 0.86531 0.94940 1.84414 1.62598 1.22125 1.33192 1.17448 0.80935 0.85438 0.88568 1.86153 1.32899 1.49263 1.70690 1.21820 1.24638 1.01478 1.12682 0.92390 1.25658 0.97148 0.94463 0.99569 1.69699 1.41190 1.04551 1.36447 0.85711 0.79457 0.77633 0.79422 1.19482 1.20641 1.20338 1.21075 0.99113 0.93672 0.94604 0.91822 1.21511 1.00324 0.96552 0.99375 1.21665 0.98228 0.99759 0.94920 1.20001 0.99519 0.91562 0.96316 0.95116 0.89264 0.92097 0.91467 0.87083 0.82310 0.77885 0.92332 0.93904 0.90994 0.93407 0.89133 0.93231 0.90741 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.90 71.98 0.71 -3.22 16 2 C -0.03 -1.05 6.47 29.85 0.19 -0.86 16 3 C -0.08 -3.22 6.58 24.89 0.16 -3.05 16 4 C -0.22 -8.70 10.79 22.06 0.24 -8.46 16 5 C -0.24 -10.61 5.95 -20.06 -0.12 -10.73 16 6 C 0.00 -0.14 5.90 24.99 0.15 0.01 16 7 O -0.13 -6.86 7.85 -0.08 0.00 -6.86 16 8 C 0.32 16.14 0.46 -12.10 -0.01 16.13 16 9 O -0.58 -31.09 11.55 -148.98 -1.72 -32.81 16 10 C -0.57 -31.32 7.61 25.60 0.19 -31.12 16 11 H 0.06 3.16 7.42 -2.91 -0.02 3.14 16 12 C 0.03 1.89 5.06 84.65 0.43 2.31 16 13 N -0.88 -48.72 9.01 21.45 0.19 -48.52 16 14 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 C -0.07 -2.80 1.93 -10.63 -0.02 -2.82 16 19 H 0.06 2.71 8.08 -2.39 -0.02 2.70 16 20 C -0.12 -4.61 8.79 71.98 0.63 -3.98 16 21 C -0.11 -3.91 5.20 30.78 0.16 -3.75 16 22 C -0.04 -1.30 6.29 29.96 0.19 -1.12 16 23 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.16 5.12 8.06 -2.91 -0.02 5.10 16 29 H 0.37 20.90 7.17 -74.05 -0.53 20.37 16 30 H 0.27 14.22 8.31 -92.71 -0.77 13.44 16 31 H 0.04 1.74 7.34 -2.39 -0.02 1.72 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.91 7.48 -2.39 -0.02 1.89 16 34 H 0.09 2.58 8.11 -2.39 -0.02 2.56 16 35 H 0.05 1.95 7.78 -2.38 -0.02 1.94 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -63.05 295.09 3.94 -59.11 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.53 Total: 34.16 kcal Atomic # 6 Polarization: -53.57 SS G_CDS: 2.91 Total: -50.66 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.19 Total: -48.52 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -1.72 Total: -39.67 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -63.05 3.94 -59.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260341887.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.782 kcal (2) G-P(sol) polarization free energy of solvation -63.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds