Wall clock time and date at job start Mon Mar 30 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47030 * 2 1 4 4 C 1.34769 * 125.75839 * 89.99981 * 3 2 1 5 5 C 1.40648 * 106.63985 * 180.02562 * 4 3 2 6 6 C 1.34885 * 107.15909 * 359.94134 * 5 4 3 7 7 O 1.33837 * 108.29957 * 0.08499 * 6 5 4 8 8 C 1.50928 * 123.90249 * 180.17061 * 6 5 4 9 9 O 1.42910 * 109.67260 * 256.97041 * 8 6 5 10 10 C 1.50697 * 109.67823 * 136.44029 * 8 6 5 11 11 H 1.08006 * 119.99852 * 355.35017 * 10 8 6 12 12 C 1.37879 * 120.00034 * 175.35156 * 10 8 6 13 13 N 1.31511 * 119.99763 * 187.99170 * 12 10 8 14 14 Si 1.86793 * 119.99976 * 7.99547 * 12 10 8 15 15 H 1.48504 * 109.47539 * 85.14644 * 14 12 10 16 16 H 1.48503 * 109.47200 * 205.14516 * 14 12 10 17 17 H 1.48497 * 109.47153 * 325.14106 * 14 12 10 18 18 C 1.53335 * 108.42785 * 16.70024 * 8 6 5 19 19 H 1.08999 * 109.46585 * 189.94167 * 18 8 6 20 20 C 1.53000 * 109.45777 * 69.96947 * 18 8 6 21 21 C 1.53098 * 109.58756 * 309.98984 * 18 8 6 22 22 C 1.50644 * 128.28061 * 179.97438 * 5 4 3 23 23 H 1.08995 * 109.47168 * 300.00279 * 1 2 3 24 24 H 1.09000 * 109.46443 * 60.00368 * 1 2 3 25 25 H 1.08996 * 109.47193 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47168 * 239.99721 * 2 1 3 27 27 H 1.08998 * 109.46897 * 119.99887 * 2 1 3 28 28 H 1.07998 * 126.67793 * 0.04574 * 4 3 2 29 29 H 0.96700 * 113.99810 * 299.99793 * 9 8 6 30 30 H 0.96998 * 120.00267 * 180.02562 * 13 12 10 31 31 H 1.09000 * 109.47540 * 59.99875 * 20 18 8 32 32 H 1.08997 * 109.47537 * 180.02562 * 20 18 8 33 33 H 1.09011 * 109.47120 * 300.00012 * 20 18 8 34 34 H 1.09001 * 109.43385 * 309.95331 * 21 18 8 35 35 H 1.09000 * 109.52174 * 189.92084 * 21 18 8 36 36 H 1.08993 * 109.67764 * 316.06678 * 22 5 4 37 37 H 1.08992 * 109.67944 * 76.58418 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2948 2.1634 1.0936 5 6 2.7372 3.4165 0.6330 6 6 2.7228 3.3727 -0.7151 7 8 2.2940 2.1620 -1.0916 8 6 3.1338 4.5247 -1.5993 9 8 1.9703 5.1642 -2.1281 10 6 3.9917 4.0163 -2.7291 11 1 4.2813 2.9763 -2.7615 12 6 4.4069 4.8788 -3.7214 13 7 5.0201 4.4098 -4.7861 14 14 4.0986 6.7135 -3.5535 15 1 5.1937 7.3291 -2.7616 16 1 4.0542 7.3335 -4.9022 17 1 2.8028 6.9365 -2.8634 18 6 3.9325 5.5237 -0.7537 19 1 4.0865 6.4402 -1.3232 20 6 5.2886 4.9150 -0.3913 21 6 3.1598 5.8440 0.5286 22 6 3.1595 4.6132 1.4446 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1868 1.8559 2.1233 29 1 1.4103 4.5835 -2.6612 30 1 5.3126 5.0165 -5.4841 31 1 5.8405 4.6880 -1.3034 32 1 5.8565 5.6247 0.2102 33 1 5.1349 3.9981 0.1780 34 1 2.1333 6.1102 0.2765 35 1 3.6364 6.6790 1.0422 36 1 2.4583 4.7663 2.2649 37 1 4.1610 4.4516 1.8431 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260341920.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:06 Heat of formation + Delta-G solvation = -63.857648 kcal Electronic energy + Delta-G solvation = -19601.994129 eV Core-core repulsion = 16730.796382 eV Total energy + Delta-G solvation = -2871.197747 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.60885 -39.71702 -36.52244 -34.99161 -34.59738 -33.36169 -30.90025 -29.77707 -27.65578 -26.50971 -24.74083 -23.15894 -22.26431 -21.48236 -19.23705 -18.96972 -18.16416 -17.04778 -16.92899 -16.23602 -15.83887 -15.63042 -15.15810 -15.07401 -14.44280 -14.38989 -13.81733 -13.72876 -13.66438 -13.36049 -13.21867 -13.01128 -12.62987 -12.51763 -12.33189 -12.23813 -12.12538 -11.80615 -11.67779 -11.44435 -10.93446 -10.70194 -10.33598 -10.24624 -8.97896 -8.39567 -6.50674 0.90692 1.32870 1.40653 1.63736 1.76590 2.17408 2.36577 2.97350 3.54130 3.68918 4.03060 4.09176 4.12548 4.16737 4.28776 4.38603 4.49481 4.54998 4.64163 4.72376 4.87596 4.89359 4.96005 4.96934 5.00490 5.03924 5.14727 5.25480 5.30359 5.34516 5.41672 5.47185 5.52545 5.68188 5.85168 6.05427 6.45323 6.59134 6.96418 7.25015 8.75285 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025437 B = 0.009185 C = 0.007757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.493373 B = 3047.605866 C = 3608.650881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.044 4.044 4 C -0.207 4.207 5 C -0.190 4.190 6 C -0.031 4.031 7 O -0.192 6.192 8 C 0.302 3.698 9 O -0.569 6.569 10 C -0.541 4.541 11 H 0.025 0.975 12 C 0.040 3.960 13 N -0.934 5.934 14 Si 0.930 3.070 15 H -0.270 1.270 16 H -0.307 1.307 17 H -0.209 1.209 18 C -0.079 4.079 19 H 0.059 0.941 20 C -0.130 4.130 21 C -0.114 4.114 22 C -0.041 4.041 23 H 0.063 0.937 24 H 0.038 0.962 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.174 0.826 29 H 0.370 0.630 30 H 0.268 0.732 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 -2.444 14.400 16.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 C -0.094 4.094 4 C -0.225 4.225 5 C -0.192 4.192 6 C -0.082 4.082 7 O -0.089 6.089 8 C 0.263 3.737 9 O -0.376 6.376 10 C -0.579 4.579 11 H 0.044 0.956 12 C -0.160 4.160 13 N -0.572 5.572 14 Si 0.756 3.244 15 H -0.196 1.196 16 H -0.235 1.235 17 H -0.132 1.132 18 C -0.097 4.097 19 H 0.076 0.924 20 C -0.187 4.187 21 C -0.151 4.151 22 C -0.078 4.078 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.135 0.865 28 H 0.191 0.809 29 H 0.217 0.783 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.370 -2.005 14.277 15.762 hybrid contribution 0.139 -0.031 -1.203 1.212 sum -6.232 -2.036 13.074 14.626 Atomic orbital electron populations 1.21748 0.93016 1.03314 1.01886 1.20218 0.97119 0.85626 1.04705 1.23363 1.05361 0.96655 0.84016 1.21474 1.07599 0.93481 0.99986 1.20553 1.07370 0.98385 0.92844 1.23517 1.03273 0.85759 0.95656 1.83898 1.65281 1.23215 1.36483 1.17728 0.83236 0.84177 0.88608 1.86540 1.38260 1.41973 1.70857 1.21312 1.33124 0.95672 1.07763 0.95624 1.25671 0.92972 1.03754 0.93592 1.70073 1.40659 1.37397 1.09118 0.86256 0.81978 0.79723 0.76473 1.19588 1.23535 1.13181 1.21290 0.95750 0.96680 0.95988 0.92352 1.21724 0.95436 1.00629 1.00923 1.21700 1.00365 0.98466 0.94584 1.20126 1.01963 0.89352 0.96329 0.91785 0.94277 0.89311 0.90941 0.86468 0.80882 0.78269 0.92315 0.94308 0.90658 0.92679 0.92258 0.88997 0.88898 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.89 71.98 0.71 -2.23 16 2 C -0.04 -0.97 6.47 29.85 0.19 -0.78 16 3 C -0.04 -1.54 6.58 24.89 0.16 -1.38 16 4 C -0.21 -6.68 10.80 22.06 0.24 -6.44 16 5 C -0.19 -7.06 5.18 -20.06 -0.10 -7.17 16 6 C -0.03 -1.41 5.63 24.99 0.14 -1.27 16 7 O -0.19 -8.73 10.59 -0.17 0.00 -8.73 16 8 C 0.30 14.53 0.44 -12.10 -0.01 14.53 16 9 O -0.57 -26.64 9.47 -148.98 -1.41 -28.05 16 10 C -0.54 -31.36 7.08 25.60 0.18 -31.18 16 11 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 12 C 0.04 2.36 5.39 84.66 0.46 2.82 16 13 N -0.93 -58.74 13.96 21.45 0.30 -58.44 16 14 Si 0.93 45.49 23.85 68.60 1.64 47.13 16 15 H -0.27 -12.51 7.00 99.48 0.70 -11.81 16 16 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 17 H -0.21 -9.77 5.37 99.48 0.53 -9.23 16 18 C -0.08 -3.30 1.93 -10.65 -0.02 -3.32 16 19 H 0.06 2.57 3.82 -2.39 -0.01 2.56 16 20 C -0.13 -5.23 8.04 71.98 0.58 -4.65 16 21 C -0.11 -3.76 5.55 30.77 0.17 -3.59 16 22 C -0.04 -1.22 5.64 29.97 0.17 -1.05 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.17 4.19 8.06 -2.91 -0.02 4.16 16 29 H 0.37 16.19 9.04 -74.06 -0.67 15.52 16 30 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 31 H 0.04 1.82 6.92 -2.39 -0.02 1.80 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.05 2.17 5.61 -2.38 -0.01 2.15 16 34 H 0.06 2.07 7.78 -2.39 -0.02 2.05 16 35 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.09 2.32 6.99 -2.39 -0.02 2.30 16 Total: -1.00 -71.21 285.62 3.62 -67.60 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.22 Total: 26.24 kcal Atomic # 6 Polarization: -48.61 SS G_CDS: 2.87 Total: -45.74 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.30 Total: -58.44 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.41 Total: -36.78 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.64 Total: 47.13 kcal Total: -71.21 3.62 -67.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260341920.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.739 kcal (2) G-P(sol) polarization free energy of solvation -71.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds