Wall clock time and date at job start Mon Mar 30 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 109.47047 * 2 1 4 4 C 1.34771 * 125.75431 * 89.96251 * 3 2 1 5 5 C 1.40647 * 106.63418 * 179.97438 * 4 3 2 6 6 C 1.34881 * 107.16353 * 0.03680 * 5 4 3 7 7 O 1.33832 * 108.29799 * 0.02562 * 6 5 4 8 8 C 1.50933 * 123.90328 * 180.02562 * 6 5 4 9 9 O 1.42900 * 109.70081 * 257.03131 * 8 6 5 10 10 C 1.50700 * 109.67743 * 136.51600 * 8 6 5 11 11 H 1.07998 * 120.00396 * 118.75183 * 10 8 6 12 12 C 1.37877 * 119.99683 * 298.75873 * 10 8 6 13 13 N 1.31515 * 120.00176 * 7.00415 * 12 10 8 14 14 Si 1.86804 * 119.99948 * 187.01094 * 12 10 8 15 15 H 1.48496 * 109.47137 * 179.97438 * 14 12 10 16 16 H 1.48505 * 109.46770 * 299.99683 * 14 12 10 17 17 H 1.48497 * 109.47214 * 59.99740 * 14 12 10 18 18 C 1.53336 * 108.42193 * 16.77954 * 8 6 5 19 19 H 1.08998 * 109.45803 * 69.95446 * 18 8 6 20 20 C 1.52999 * 109.46200 * 189.93007 * 18 8 6 21 21 C 1.53125 * 109.53841 * 309.93831 * 18 8 6 22 22 C 1.50651 * 128.27995 * 180.02562 * 5 4 3 23 23 H 1.08992 * 109.47322 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46920 * 299.99810 * 1 2 3 25 25 H 1.09004 * 109.47327 * 59.99648 * 1 2 3 26 26 H 1.08998 * 109.47062 * 240.00196 * 2 1 3 27 27 H 1.08999 * 109.47269 * 119.99604 * 2 1 3 28 28 H 1.08003 * 126.68181 * 0.10363 * 4 3 2 29 29 H 0.96700 * 114.00467 * 295.08445 * 9 8 6 30 30 H 0.97002 * 119.99901 * 1.46663 * 13 12 10 31 31 H 1.08994 * 109.47126 * 59.99981 * 20 18 8 32 32 H 1.08996 * 109.47322 * 180.02562 * 20 18 8 33 33 H 1.09002 * 109.46659 * 300.00206 * 20 18 8 34 34 H 1.08997 * 109.47850 * 189.97027 * 21 18 8 35 35 H 1.09004 * 109.47648 * 309.99622 * 21 18 8 36 36 H 1.08995 * 109.68142 * 76.71137 * 22 5 4 37 37 H 1.08997 * 109.67688 * 316.16110 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2941 2.1636 1.0937 5 6 2.7379 3.4162 0.6330 6 6 2.7230 3.3726 -0.7150 7 8 2.2938 2.1622 -1.0916 8 6 3.1321 4.5254 -1.5992 9 8 1.9681 5.1649 -2.1265 10 6 3.9886 4.0180 -2.7305 11 1 3.6626 4.1426 -3.7526 12 6 5.1885 3.3946 -2.4608 13 7 5.5218 3.1191 -1.2188 14 14 6.3408 2.9415 -3.8595 15 1 7.5547 2.2872 -3.3086 16 1 5.6516 2.0076 -4.7858 17 1 6.7324 4.1701 -4.5960 18 6 3.9317 5.5242 -0.7541 19 1 4.8983 5.0907 -0.4974 20 6 4.1463 6.8111 -1.5532 21 6 3.1590 5.8435 0.5288 22 6 3.1612 4.6127 1.4447 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1863 1.8560 2.1234 29 1 1.4473 4.6066 -2.7199 30 1 4.9141 3.3352 -0.4942 31 1 3.1799 7.2445 -1.8104 32 1 4.7151 7.5211 -0.9528 33 1 4.6973 6.5843 -2.4660 34 1 3.6355 6.6789 1.0417 35 1 2.1320 6.1089 0.2779 36 1 4.1633 4.4510 1.8417 37 1 2.4608 4.7656 2.2657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260341973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:11 Heat of formation + Delta-G solvation = -57.573375 kcal Electronic energy + Delta-G solvation = -19737.769965 eV Core-core repulsion = 16866.844725 eV Total energy + Delta-G solvation = -2870.925240 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.83838 -37.82578 -34.50942 -33.68046 -32.87114 -31.66402 -29.09348 -28.01505 -25.59023 -24.33472 -22.96838 -21.73705 -20.43270 -19.41198 -18.14770 -17.54614 -16.32234 -15.17379 -14.84239 -14.24692 -14.01765 -13.89647 -13.72113 -13.14012 -12.95139 -12.72830 -12.28301 -12.19936 -11.81293 -11.76513 -11.40281 -11.16998 -11.02359 -10.85445 -10.72966 -10.58963 -10.29853 -10.15607 -9.84794 -9.75441 -9.63062 -8.68489 -8.48343 -8.30164 -7.25411 -6.35466 -4.26217 2.66923 3.38932 3.39148 3.46876 3.58860 3.83434 4.44553 5.12735 5.19460 5.30902 5.47822 5.51792 5.64645 5.70740 5.73603 5.85615 5.96281 5.99698 6.04521 6.17708 6.31216 6.34143 6.34902 6.40302 6.54889 6.63062 6.71306 6.80504 6.95303 7.09504 7.15099 7.22608 7.45120 7.51086 7.82623 8.16539 8.32505 8.70642 8.73502 9.49836 10.90890 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.011055 C = 0.008334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.514733 B = 2532.098495 C = 3358.904029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.035 4.035 3 C -0.049 4.049 4 C -0.199 4.199 5 C -0.213 4.213 6 C 0.027 3.973 7 O -0.153 6.153 8 C 0.319 3.681 9 O -0.562 6.562 10 C -0.627 4.627 11 H 0.062 0.938 12 C 0.034 3.966 13 N -0.898 5.898 14 Si 1.064 2.936 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.285 1.285 18 C -0.076 4.076 19 H 0.094 0.906 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.042 4.042 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.365 0.635 30 H 0.284 0.716 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 -1.292 3.296 6.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 C -0.099 4.099 4 C -0.218 4.218 5 C -0.214 4.214 6 C -0.025 4.025 7 O -0.048 6.048 8 C 0.279 3.721 9 O -0.367 6.367 10 C -0.664 4.664 11 H 0.080 0.920 12 C -0.174 4.174 13 N -0.534 5.534 14 Si 0.892 3.108 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.211 1.211 18 C -0.094 4.094 19 H 0.112 0.888 20 C -0.180 4.180 21 C -0.155 4.155 22 C -0.079 4.079 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.150 0.850 29 H 0.210 0.790 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.199 -1.576 3.049 5.423 hybrid contribution -1.583 -0.021 0.336 1.619 sum -5.782 -1.598 3.385 6.888 Atomic orbital electron populations 1.21773 0.94805 1.01375 1.02401 1.19883 0.95581 0.88581 1.03215 1.22199 1.07684 0.95142 0.84887 1.20996 1.07961 0.94671 0.98215 1.20052 1.10525 0.96822 0.94033 1.24479 0.97513 0.85769 0.94784 1.83892 1.64288 1.22606 1.34028 1.17674 0.82526 0.82390 0.89535 1.86341 1.40247 1.43926 1.66169 1.22344 1.07681 1.43460 0.92903 0.91986 1.25733 0.97276 0.93111 1.01243 1.70766 1.40431 1.42233 0.99995 0.83619 0.76145 0.76640 0.74416 1.20634 1.21345 1.21114 1.21252 0.99693 0.95646 0.92860 0.88764 1.21507 1.00760 0.95665 1.00055 1.21764 1.01017 0.96370 0.96363 1.19937 1.00001 0.91644 0.96299 0.92347 0.92538 0.92445 0.90660 0.89844 0.84988 0.78968 0.90088 0.93074 0.94712 0.91937 0.92718 0.91941 0.91787 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.89 37.16 0.37 -1.54 16 2 C -0.04 -0.55 6.47 -27.88 -0.18 -0.73 16 3 C -0.05 -1.02 6.58 -35.53 -0.23 -1.26 16 4 C -0.20 -4.15 10.80 -39.90 -0.43 -4.58 16 5 C -0.21 -4.88 5.13 -104.93 -0.54 -5.41 16 6 C 0.03 0.68 4.34 -35.39 -0.15 0.53 16 7 O -0.15 -3.80 10.59 6.38 0.07 -3.74 16 8 C 0.32 7.98 0.53 -92.64 -0.05 7.93 16 9 O -0.56 -13.05 11.56 -35.23 -0.41 -13.46 16 10 C -0.63 -17.06 7.51 -34.44 -0.26 -17.31 16 11 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 12 C 0.03 0.93 5.06 -17.82 -0.09 0.84 16 13 N -0.90 -26.24 12.49 55.43 0.69 -25.54 16 14 Si 1.06 24.72 29.91 -169.99 -5.08 19.64 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 C -0.08 -1.76 1.66 -90.38 -0.15 -1.91 16 19 H 0.09 2.45 5.48 -51.93 -0.28 2.17 16 20 C -0.12 -2.60 8.79 37.16 0.33 -2.27 16 21 C -0.12 -2.39 5.20 -26.45 -0.14 -2.52 16 22 C -0.04 -0.84 6.29 -27.69 -0.17 -1.01 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.13 2.34 8.06 -52.48 -0.42 1.92 16 29 H 0.36 7.56 9.03 45.56 0.41 7.97 16 30 H 0.28 8.18 3.83 -40.82 -0.16 8.02 16 31 H 0.05 1.05 7.48 -51.93 -0.39 0.66 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.40 7.58 -51.93 -0.39 1.01 16 34 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 35 H 0.06 1.28 7.78 -51.93 -0.40 0.88 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 294.43 15.07 4.44 4.44 Total: -1.00 -30.96 294.43 -6.64 -37.61 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -4.65 Total: 10.32 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: -1.70 Total: -29.27 kcal Atomic # 7 Polarization: -26.24 SS G_CDS: 0.69 Total: -25.54 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.34 Total: -17.19 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.64 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.96 -6.64 -37.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260341973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.968 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds