Wall clock time and date at job start Mon Mar 30 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 109.47047 * 2 1 4 4 C 1.34771 * 125.75431 * 89.96251 * 3 2 1 5 5 C 1.40647 * 106.63418 * 179.97438 * 4 3 2 6 6 C 1.34881 * 107.16353 * 0.03680 * 5 4 3 7 7 O 1.33832 * 108.29799 * 0.02562 * 6 5 4 8 8 C 1.50933 * 123.90328 * 180.02562 * 6 5 4 9 9 O 1.42900 * 109.70081 * 257.03131 * 8 6 5 10 10 C 1.50700 * 109.67743 * 136.51600 * 8 6 5 11 11 H 1.07998 * 120.00396 * 118.75183 * 10 8 6 12 12 C 1.37877 * 119.99683 * 298.75873 * 10 8 6 13 13 N 1.31515 * 120.00176 * 7.00415 * 12 10 8 14 14 Si 1.86804 * 119.99948 * 187.01094 * 12 10 8 15 15 H 1.48496 * 109.47137 * 179.97438 * 14 12 10 16 16 H 1.48505 * 109.46770 * 299.99683 * 14 12 10 17 17 H 1.48497 * 109.47214 * 59.99740 * 14 12 10 18 18 C 1.53336 * 108.42193 * 16.77954 * 8 6 5 19 19 H 1.08998 * 109.45803 * 69.95446 * 18 8 6 20 20 C 1.52999 * 109.46200 * 189.93007 * 18 8 6 21 21 C 1.53125 * 109.53841 * 309.93831 * 18 8 6 22 22 C 1.50651 * 128.27995 * 180.02562 * 5 4 3 23 23 H 1.08992 * 109.47322 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46920 * 299.99810 * 1 2 3 25 25 H 1.09004 * 109.47327 * 59.99648 * 1 2 3 26 26 H 1.08998 * 109.47062 * 240.00196 * 2 1 3 27 27 H 1.08999 * 109.47269 * 119.99604 * 2 1 3 28 28 H 1.08003 * 126.68181 * 0.10363 * 4 3 2 29 29 H 0.96700 * 114.00467 * 295.08445 * 9 8 6 30 30 H 0.97002 * 119.99901 * 1.46663 * 13 12 10 31 31 H 1.08994 * 109.47126 * 59.99981 * 20 18 8 32 32 H 1.08996 * 109.47322 * 180.02562 * 20 18 8 33 33 H 1.09002 * 109.46659 * 300.00206 * 20 18 8 34 34 H 1.08997 * 109.47850 * 189.97027 * 21 18 8 35 35 H 1.09004 * 109.47648 * 309.99622 * 21 18 8 36 36 H 1.08995 * 109.68142 * 76.71137 * 22 5 4 37 37 H 1.08997 * 109.67688 * 316.16110 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2941 2.1636 1.0937 5 6 2.7379 3.4162 0.6330 6 6 2.7230 3.3726 -0.7150 7 8 2.2938 2.1622 -1.0916 8 6 3.1321 4.5254 -1.5992 9 8 1.9681 5.1649 -2.1265 10 6 3.9886 4.0180 -2.7305 11 1 3.6626 4.1426 -3.7526 12 6 5.1885 3.3946 -2.4608 13 7 5.5218 3.1191 -1.2188 14 14 6.3408 2.9415 -3.8595 15 1 7.5547 2.2872 -3.3086 16 1 5.6516 2.0076 -4.7858 17 1 6.7324 4.1701 -4.5960 18 6 3.9317 5.5242 -0.7541 19 1 4.8983 5.0907 -0.4974 20 6 4.1463 6.8111 -1.5532 21 6 3.1590 5.8435 0.5288 22 6 3.1612 4.6127 1.4447 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1863 1.8560 2.1234 29 1 1.4473 4.6066 -2.7199 30 1 4.9141 3.3352 -0.4942 31 1 3.1799 7.2445 -1.8104 32 1 4.7151 7.5211 -0.9528 33 1 4.6973 6.5843 -2.4660 34 1 3.6355 6.6789 1.0417 35 1 2.1320 6.1089 0.2779 36 1 4.1633 4.4510 1.8417 37 1 2.4608 4.7656 2.2657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260341973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:11 Heat of formation + Delta-G solvation = -76.882566 kcal Electronic energy + Delta-G solvation = -19738.607274 eV Core-core repulsion = 16866.844725 eV Total energy + Delta-G solvation = -2871.762549 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.55048 -39.61852 -36.26101 -35.09931 -34.74077 -33.40913 -30.69474 -29.75941 -27.37202 -26.12744 -24.39588 -23.41693 -22.16014 -21.09876 -19.98788 -19.39865 -18.07513 -16.89448 -16.58465 -15.96846 -15.62461 -15.56188 -15.25325 -14.81239 -14.57728 -14.37448 -13.90186 -13.64841 -13.52073 -13.24046 -13.01422 -12.86656 -12.68675 -12.47357 -12.26263 -12.13318 -11.99996 -11.92602 -11.58546 -11.55062 -11.37787 -10.53559 -10.31284 -10.22357 -9.03526 -8.42884 -6.40151 0.97699 1.49355 1.55538 1.75037 1.78289 2.22919 2.52842 3.13936 3.64789 3.76739 4.03213 4.07292 4.13294 4.17595 4.29309 4.35830 4.43418 4.63726 4.66138 4.69611 4.82392 4.83268 4.94031 4.98803 5.00069 5.04188 5.14010 5.26301 5.28851 5.39916 5.45589 5.53056 5.65749 5.82626 5.93309 6.09550 6.51092 6.62527 6.89215 7.44253 8.78778 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.011055 C = 0.008334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.514733 B = 2532.098495 C = 3358.904029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.037 4.037 3 C -0.051 4.051 4 C -0.213 4.213 5 C -0.217 4.217 6 C -0.015 4.015 7 O -0.186 6.186 8 C 0.312 3.688 9 O -0.564 6.564 10 C -0.637 4.637 11 H 0.050 0.950 12 C -0.007 4.007 13 N -0.926 5.926 14 Si 1.102 2.898 15 H -0.283 1.283 16 H -0.277 1.277 17 H -0.268 1.268 18 C -0.078 4.078 19 H 0.065 0.935 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.043 4.043 23 H 0.091 0.909 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.165 0.835 29 H 0.372 0.628 30 H 0.281 0.719 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.478 -1.635 4.434 8.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 C -0.101 4.101 4 C -0.232 4.232 5 C -0.219 4.219 6 C -0.066 4.066 7 O -0.082 6.082 8 C 0.272 3.728 9 O -0.370 6.370 10 C -0.675 4.675 11 H 0.068 0.932 12 C -0.210 4.210 13 N -0.563 5.563 14 Si 0.925 3.075 15 H -0.209 1.209 16 H -0.203 1.203 17 H -0.193 1.193 18 C -0.097 4.097 19 H 0.083 0.917 20 C -0.174 4.174 21 C -0.148 4.148 22 C -0.080 4.080 23 H 0.109 0.891 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.182 0.818 29 H 0.218 0.782 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.829 -1.903 4.184 6.667 hybrid contribution -1.471 0.038 -0.009 1.471 sum -6.300 -1.865 4.175 7.784 Atomic orbital electron populations 1.21729 0.92633 1.03372 1.01867 1.20175 0.97358 0.85502 1.04384 1.23281 1.05964 0.96739 0.84089 1.21408 1.07987 0.93962 0.99797 1.20545 1.09199 0.98407 0.93723 1.24369 1.00425 0.86137 0.95715 1.83847 1.65099 1.23207 1.36054 1.17692 0.82556 0.83190 0.89403 1.86292 1.40053 1.44197 1.66438 1.22611 1.08355 1.43273 0.93234 0.93187 1.26859 0.98797 0.92890 1.02415 1.70817 1.40906 1.43975 1.00634 0.83136 0.74589 0.77253 0.72559 1.20891 1.20314 1.19312 1.21192 0.98349 0.95725 0.94478 0.91706 1.21450 1.01042 0.95495 0.99367 1.21705 1.00478 0.97484 0.95121 1.20050 1.00654 0.90512 0.96752 0.89071 0.92071 0.93983 0.90904 0.87185 0.81783 0.78210 0.90547 0.92703 0.91887 0.94113 0.89787 0.92284 0.91907 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.89 71.98 0.71 -2.57 16 2 C -0.04 -1.09 6.47 29.85 0.19 -0.89 16 3 C -0.05 -2.10 6.58 24.89 0.16 -1.93 16 4 C -0.21 -8.56 10.80 22.06 0.24 -8.32 16 5 C -0.22 -9.81 5.13 -20.06 -0.10 -9.91 16 6 C -0.01 -0.75 4.34 24.99 0.11 -0.64 16 7 O -0.19 -9.37 10.59 -0.08 0.00 -9.37 16 8 C 0.31 15.86 0.53 -12.10 -0.01 15.85 16 9 O -0.56 -26.61 11.56 -148.98 -1.72 -28.33 16 10 C -0.64 -35.57 7.51 25.60 0.19 -35.37 16 11 H 0.05 2.81 7.82 -2.91 -0.02 2.78 16 12 C -0.01 -0.42 5.06 84.65 0.43 0.01 16 13 N -0.93 -55.12 12.49 21.45 0.27 -54.85 16 14 Si 1.10 50.35 29.91 68.60 2.05 52.41 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 18 C -0.08 -3.65 1.66 -10.64 -0.02 -3.67 16 19 H 0.06 3.43 5.48 -2.39 -0.01 3.41 16 20 C -0.12 -4.88 8.79 71.98 0.63 -4.24 16 21 C -0.11 -4.31 5.20 30.78 0.16 -4.15 16 22 C -0.04 -1.65 6.29 29.97 0.19 -1.46 16 23 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.16 5.34 8.06 -2.91 -0.02 5.31 16 29 H 0.37 15.88 9.03 -74.06 -0.67 15.21 16 30 H 0.28 16.47 3.83 -92.71 -0.35 16.12 16 31 H 0.05 2.22 7.48 -2.39 -0.02 2.20 16 32 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.04 1.84 7.58 -2.39 -0.02 1.82 16 34 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 35 H 0.06 2.33 7.78 -2.38 -0.02 2.32 16 36 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -67.91 294.43 4.30 -63.61 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.81 Total: 33.84 kcal Atomic # 6 Polarization: -60.20 SS G_CDS: 2.89 Total: -57.31 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.27 Total: -54.85 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -1.72 Total: -37.70 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.41 kcal Total: -67.91 4.30 -63.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260341973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.272 kcal (2) G-P(sol) polarization free energy of solvation -67.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds