Wall clock time and date at job start Mon Mar 30 2020 06:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42893 * 109.47079 * 2 1 4 4 C 1.35901 * 117.00342 * 180.02562 * 3 2 1 5 5 C 1.38791 * 120.02242 * 359.97438 * 4 3 2 6 6 C 1.38157 * 120.05528 * 180.02562 * 5 4 3 7 7 C 1.38196 * 120.10692 * 0.26284 * 6 5 4 8 8 C 1.38753 * 120.05313 * 359.43827 * 7 6 5 9 9 O 1.35898 * 120.02712 * 180.29995 * 8 7 6 10 10 C 1.42899 * 117.00044 * 0.27988 * 9 8 7 11 11 C 1.38612 * 120.03121 * 179.97438 * 4 3 2 12 12 C 1.50696 * 120.05340 * 359.97438 * 11 4 3 13 13 C 1.53000 * 109.47110 * 90.00522 * 12 11 4 14 14 C 1.50706 * 109.47112 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00013 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99843 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00058 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99806 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47293 * 59.99808 * 18 16 14 20 20 H 1.48501 * 109.46755 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47104 * 299.99562 * 18 16 14 22 22 H 1.09001 * 109.47595 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47491 * 300.00572 * 1 2 3 24 24 H 1.09001 * 109.47375 * 60.00356 * 1 2 3 25 25 H 1.08993 * 109.46809 * 239.99509 * 2 1 3 26 26 H 1.09001 * 109.46933 * 119.99945 * 2 1 3 27 27 H 1.08007 * 119.97412 * 359.97438 * 5 4 3 28 28 H 1.08002 * 119.94400 * 179.97438 * 6 5 4 29 29 H 1.08001 * 119.97149 * 179.72261 * 7 6 5 30 30 H 1.09000 * 109.47455 * 300.00173 * 10 9 8 31 31 H 1.09000 * 109.47089 * 59.99795 * 10 9 8 32 32 H 1.08997 * 109.47056 * 179.97438 * 10 9 8 33 33 H 1.09004 * 109.46840 * 210.00671 * 12 11 4 34 34 H 1.09000 * 109.47543 * 330.00159 * 12 11 4 35 35 H 1.09000 * 109.46955 * 299.99651 * 13 12 11 36 36 H 1.08992 * 109.47028 * 60.00052 * 13 12 11 37 37 H 0.97000 * 119.99660 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1995 0.4251 -0.0005 6 6 5.5693 0.6054 -0.0005 7 6 6.1005 1.8812 0.0049 8 6 5.2590 2.9843 -0.0014 9 8 5.7820 4.2386 -0.0022 10 6 7.2068 4.3474 -0.0025 11 6 3.8840 2.8060 -0.0011 12 6 2.9677 4.0024 -0.0017 13 6 2.6576 4.4080 1.4406 14 6 1.7408 5.6041 1.4400 15 1 1.4124 6.0323 0.5045 16 6 1.3220 6.1522 2.6338 17 7 1.7222 5.6310 3.7730 18 14 0.1861 7.6352 2.6330 19 1 -1.0777 7.2904 1.9336 20 1 -0.1149 8.0288 4.0329 21 1 0.8475 8.7650 1.9320 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8932 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7867 -0.5730 0.0003 28 1 6.2259 -0.2521 -0.0001 29 1 7.1716 2.0196 0.0094 30 1 7.6085 3.8632 0.8876 31 1 7.6080 3.8622 -0.8923 32 1 7.4909 5.3997 -0.0036 33 1 3.4534 4.8317 -0.5160 34 1 2.0402 3.7495 -0.5154 35 1 2.1719 3.5787 1.9548 36 1 3.5851 4.6610 1.9542 37 1 1.4272 6.0165 4.6128 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260347037.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:48 Heat of formation + Delta-G solvation = -66.128780 kcal Electronic energy + Delta-G solvation = -18383.795103 eV Core-core repulsion = 15512.498872 eV Total energy + Delta-G solvation = -2871.296230 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.20530 -38.67603 -36.16062 -33.97199 -32.15833 -31.26211 -29.06373 -28.62897 -27.00547 -24.84681 -23.55951 -21.91676 -21.09100 -20.03972 -18.17809 -16.36784 -16.25757 -16.00692 -15.81577 -15.32354 -15.14040 -14.37261 -14.32705 -13.18273 -13.12549 -12.88934 -12.49857 -12.31486 -12.25695 -11.95626 -11.82219 -11.61390 -11.12489 -11.03469 -10.90118 -10.77902 -10.58523 -10.33767 -10.24132 -9.56508 -9.44219 -8.91536 -8.18593 -7.78877 -7.65143 -5.84537 -3.85646 1.75879 1.78908 3.24883 3.42427 3.45585 3.48970 3.96005 4.11229 4.58258 4.99601 5.07092 5.15985 5.25319 5.28777 5.30917 5.35873 5.40626 5.50676 5.53584 5.67055 5.71301 5.83137 5.94528 6.20077 6.34364 6.37835 6.53700 6.70427 6.80456 6.98975 7.01804 7.35494 7.74827 7.84450 7.88131 8.08425 8.19349 8.60283 9.21208 9.76345 11.26837 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.007537 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.438248 B = 3714.039001 C = 5163.856587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.298 6.298 4 C 0.163 3.837 5 C -0.246 4.246 6 C -0.061 4.061 7 C -0.246 4.246 8 C 0.160 3.840 9 O -0.300 6.300 10 C 0.029 3.971 11 C -0.123 4.123 12 C -0.060 4.060 13 C 0.036 3.964 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.997 -11.667 -8.445 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.211 6.211 4 C 0.117 3.883 5 C -0.265 4.265 6 C -0.080 4.080 7 C -0.265 4.265 8 C 0.114 3.886 9 O -0.212 6.212 10 C -0.066 4.066 11 C -0.125 4.125 12 C -0.098 4.098 13 C -0.001 4.001 14 C -0.551 4.551 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.717 -11.310 -8.250 15.527 hybrid contribution -0.168 0.351 0.203 0.438 sum 6.548 -10.960 -8.048 15.092 Atomic orbital electron populations 1.21762 0.92905 1.02243 1.04041 1.22724 0.95891 0.82527 1.00803 1.86190 1.18627 1.28266 1.88027 1.18414 0.82439 0.92668 0.94738 1.21031 0.94242 0.97620 1.13607 1.20488 0.94165 0.96135 0.97187 1.21025 0.99255 0.92620 1.13599 1.18465 0.91645 0.83589 0.94853 1.86194 1.22222 1.24677 1.88119 1.23013 0.79399 1.03427 1.00774 1.18892 0.91632 0.94463 1.07483 1.20467 0.95678 0.91879 1.01736 1.18983 0.96304 0.95777 0.89018 1.21246 1.28411 1.13337 0.92142 0.92806 1.25004 0.96568 0.97209 0.95697 1.69977 1.45388 1.41202 0.97134 0.86696 0.81371 0.83374 0.76760 1.20320 1.21413 1.20312 0.90851 0.91048 0.91550 0.92564 0.92291 0.85961 0.86225 0.85907 0.92873 0.93167 0.88423 0.92162 0.92143 0.96671 0.96680 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 37.16 0.38 -1.42 16 2 C 0.06 0.75 5.46 37.16 0.20 0.96 16 3 O -0.30 -5.59 9.18 -19.43 -0.18 -5.76 16 4 C 0.16 3.10 6.66 -39.24 -0.26 2.84 16 5 C -0.25 -3.83 9.04 -39.41 -0.36 -4.18 16 6 C -0.06 -0.88 10.04 -39.63 -0.40 -1.28 16 7 C -0.25 -3.81 9.04 -39.41 -0.36 -4.17 16 8 C 0.16 3.03 6.66 -39.24 -0.26 2.77 16 9 O -0.30 -5.59 9.54 -19.42 -0.19 -5.77 16 10 C 0.03 0.37 9.81 101.05 0.99 1.36 16 11 C -0.12 -2.60 5.16 -104.33 -0.54 -3.14 16 12 C -0.06 -1.44 4.84 -27.89 -0.13 -1.57 16 13 C 0.04 1.03 4.96 -27.88 -0.14 0.89 16 14 C -0.51 -15.48 9.11 -34.44 -0.31 -15.79 16 15 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.90 -28.28 13.29 55.43 0.74 -27.55 16 18 Si 0.89 22.59 29.54 -169.99 -5.02 17.57 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 26 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 27 H 0.12 1.55 6.29 -52.48 -0.33 1.22 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.12 1.54 6.29 -52.49 -0.33 1.21 16 30 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 31 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.43 7.53 -51.93 -0.39 1.04 16 34 H 0.06 1.43 7.53 -51.93 -0.39 1.04 16 35 H 0.01 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.01 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 310.60 15.07 4.68 4.68 Total: -1.00 -34.37 310.60 -6.78 -41.15 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -5.53 Total: -3.16 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -1.28 Total: -21.15 kcal Atomic # 7 Polarization: -28.28 SS G_CDS: 0.74 Total: -27.55 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.36 Total: -11.54 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.37 -6.78 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260347037.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.979 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds