Wall clock time and date at job start Mon Mar 30 2020 06:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42893 * 109.47079 * 2 1 4 4 C 1.35901 * 117.00342 * 180.02562 * 3 2 1 5 5 C 1.38791 * 120.02242 * 359.97438 * 4 3 2 6 6 C 1.38157 * 120.05528 * 180.02562 * 5 4 3 7 7 C 1.38196 * 120.10692 * 0.26284 * 6 5 4 8 8 C 1.38753 * 120.05313 * 359.43827 * 7 6 5 9 9 O 1.35898 * 120.02712 * 180.29995 * 8 7 6 10 10 C 1.42899 * 117.00044 * 0.27988 * 9 8 7 11 11 C 1.38612 * 120.03121 * 179.97438 * 4 3 2 12 12 C 1.50696 * 120.05340 * 359.97438 * 11 4 3 13 13 C 1.53000 * 109.47110 * 90.00522 * 12 11 4 14 14 C 1.50706 * 109.47112 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00013 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99843 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00058 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99806 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47293 * 59.99808 * 18 16 14 20 20 H 1.48501 * 109.46755 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47104 * 299.99562 * 18 16 14 22 22 H 1.09001 * 109.47595 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47491 * 300.00572 * 1 2 3 24 24 H 1.09001 * 109.47375 * 60.00356 * 1 2 3 25 25 H 1.08993 * 109.46809 * 239.99509 * 2 1 3 26 26 H 1.09001 * 109.46933 * 119.99945 * 2 1 3 27 27 H 1.08007 * 119.97412 * 359.97438 * 5 4 3 28 28 H 1.08002 * 119.94400 * 179.97438 * 6 5 4 29 29 H 1.08001 * 119.97149 * 179.72261 * 7 6 5 30 30 H 1.09000 * 109.47455 * 300.00173 * 10 9 8 31 31 H 1.09000 * 109.47089 * 59.99795 * 10 9 8 32 32 H 1.08997 * 109.47056 * 179.97438 * 10 9 8 33 33 H 1.09004 * 109.46840 * 210.00671 * 12 11 4 34 34 H 1.09000 * 109.47543 * 330.00159 * 12 11 4 35 35 H 1.09000 * 109.46955 * 299.99651 * 13 12 11 36 36 H 1.08992 * 109.47028 * 60.00052 * 13 12 11 37 37 H 0.97000 * 119.99660 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1995 0.4251 -0.0005 6 6 5.5693 0.6054 -0.0005 7 6 6.1005 1.8812 0.0049 8 6 5.2590 2.9843 -0.0014 9 8 5.7820 4.2386 -0.0022 10 6 7.2068 4.3474 -0.0025 11 6 3.8840 2.8060 -0.0011 12 6 2.9677 4.0024 -0.0017 13 6 2.6576 4.4080 1.4406 14 6 1.7408 5.6041 1.4400 15 1 1.4124 6.0323 0.5045 16 6 1.3220 6.1522 2.6338 17 7 1.7222 5.6310 3.7730 18 14 0.1861 7.6352 2.6330 19 1 -1.0777 7.2904 1.9336 20 1 -0.1149 8.0288 4.0329 21 1 0.8475 8.7650 1.9320 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8932 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7867 -0.5730 0.0003 28 1 6.2259 -0.2521 -0.0001 29 1 7.1716 2.0196 0.0094 30 1 7.6085 3.8632 0.8876 31 1 7.6080 3.8622 -0.8923 32 1 7.4909 5.3997 -0.0036 33 1 3.4534 4.8317 -0.5160 34 1 2.0402 3.7495 -0.5154 35 1 2.1719 3.5787 1.9548 36 1 3.5851 4.6610 1.9542 37 1 1.4272 6.0165 4.6128 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260347037.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:47 Heat of formation + Delta-G solvation = -88.043159 kcal Electronic energy + Delta-G solvation = -18384.745381 eV Core-core repulsion = 15512.498872 eV Total energy + Delta-G solvation = -2872.246509 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.50665 -39.94762 -37.43071 -35.97121 -34.04771 -32.47321 -30.63150 -30.06579 -28.15229 -26.82865 -24.67394 -23.71055 -22.33667 -21.73874 -19.44790 -18.52007 -17.65982 -17.28348 -17.05148 -16.56544 -16.49090 -16.36962 -15.54321 -14.75396 -14.68061 -14.26960 -14.06002 -13.91419 -13.46835 -13.28348 -13.11232 -12.96977 -12.83946 -12.72007 -12.51052 -12.19096 -11.98984 -11.79129 -11.67197 -11.53530 -11.44413 -11.07842 -10.54500 -9.13309 -9.02687 -8.17911 -6.30460 0.45530 0.51107 1.37438 1.42726 1.50488 2.07382 2.41391 2.80020 2.81889 3.13236 3.86113 4.05637 4.08230 4.09006 4.14989 4.28614 4.38454 4.42578 4.43539 4.56070 4.70212 4.72201 4.74399 4.85804 4.95467 4.98544 5.21131 5.29533 5.33588 5.37139 5.48439 5.49607 5.67543 5.81224 5.87190 6.25507 6.53275 6.59804 6.84831 7.37613 8.93822 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.007537 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.438248 B = 3714.039001 C = 5163.856587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.335 6.335 4 C 0.149 3.851 5 C -0.245 4.245 6 C -0.046 4.046 7 C -0.245 4.245 8 C 0.147 3.853 9 O -0.338 6.338 10 C 0.019 3.981 11 C -0.178 4.178 12 C -0.040 4.040 13 C 0.053 3.947 14 C -0.544 4.544 15 H 0.057 0.943 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.969 3.031 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.265 1.265 22 H 0.110 0.890 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.155 0.845 28 H 0.168 0.832 29 H 0.157 0.843 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.050 0.950 34 H 0.050 0.950 35 H -0.019 1.019 36 H -0.019 1.019 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.897 -13.045 -9.195 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.249 6.249 4 C 0.104 3.896 5 C -0.264 4.264 6 C -0.064 4.064 7 C -0.263 4.263 8 C 0.101 3.899 9 O -0.252 6.252 10 C -0.075 4.075 11 C -0.179 4.179 12 C -0.077 4.077 13 C 0.016 3.984 14 C -0.582 4.582 15 H 0.075 0.925 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.190 1.190 22 H 0.129 0.871 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.173 0.827 28 H 0.185 0.815 29 H 0.174 0.826 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.069 0.931 34 H 0.068 0.932 35 H -0.001 1.001 36 H 0.000 1.000 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.627 -12.699 -9.015 17.341 hybrid contribution -0.375 0.692 0.448 0.906 sum 7.252 -12.007 -8.567 16.436 Atomic orbital electron populations 1.21817 0.92101 1.04195 1.02616 1.23098 0.96638 0.80670 1.02485 1.86149 1.19040 1.31560 1.88147 1.18665 0.83059 0.92994 0.94921 1.21408 0.94604 0.97871 1.12488 1.21092 0.94220 0.97133 0.93912 1.21413 1.00544 0.91967 1.12395 1.18712 0.91379 0.84787 0.94993 1.86132 1.25479 1.25310 1.88235 1.23354 0.76670 1.04965 1.02496 1.18873 0.92539 0.94214 1.12288 1.20023 0.96112 0.93485 0.98086 1.18719 0.93987 0.94225 0.91491 1.21654 1.29396 1.14357 0.92782 0.92456 1.26037 0.98150 1.00698 0.94960 1.70127 1.46481 1.42886 0.97943 0.85451 0.79025 0.78863 0.77392 1.19068 1.20349 1.19026 0.87132 0.93389 0.92037 0.89882 0.91289 0.82730 0.81494 0.82565 0.91798 0.90555 0.87122 0.93097 0.93176 1.00099 1.00015 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 10.28 71.98 0.74 -2.74 16 2 C 0.05 1.18 5.46 71.98 0.39 1.57 16 3 O -0.33 -12.97 9.18 -92.43 -0.85 -13.82 16 4 C 0.15 5.75 6.66 22.49 0.15 5.90 16 5 C -0.25 -7.04 9.04 22.38 0.20 -6.84 16 6 C -0.05 -1.14 10.04 22.24 0.22 -0.92 16 7 C -0.24 -6.98 9.04 22.38 0.20 -6.77 16 8 C 0.15 5.63 6.66 22.49 0.15 5.78 16 9 O -0.34 -12.94 9.54 -92.40 -0.88 -13.82 16 10 C 0.02 0.47 9.81 113.37 1.11 1.58 16 11 C -0.18 -7.83 5.16 -19.68 -0.10 -7.93 16 12 C -0.04 -2.03 4.84 29.85 0.14 -1.89 16 13 C 0.05 3.23 4.96 29.85 0.15 3.38 16 14 C -0.54 -34.35 9.11 25.60 0.23 -34.12 16 15 H 0.06 3.48 7.74 -2.91 -0.02 3.45 16 16 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 17 N -0.93 -60.79 13.29 21.45 0.28 -60.51 16 18 Si 0.97 47.06 29.54 68.60 2.03 49.09 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.08 1.69 7.66 -2.39 -0.02 1.67 16 26 H 0.07 1.62 7.66 -2.39 -0.02 1.61 16 27 H 0.16 3.33 6.29 -2.91 -0.02 3.31 16 28 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 29 H 0.16 3.30 6.29 -2.91 -0.02 3.28 16 30 H 0.06 1.39 7.65 -2.39 -0.02 1.37 16 31 H 0.08 1.43 7.67 -2.39 -0.02 1.41 16 32 H 0.11 2.31 8.14 -2.39 -0.02 2.30 16 33 H 0.05 2.60 7.53 -2.38 -0.02 2.58 16 34 H 0.05 2.57 7.53 -2.39 -0.02 2.55 16 35 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 36 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 37 H 0.26 15.97 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -79.76 310.60 5.68 -74.08 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.04 Total: 7.60 kcal Atomic # 6 Polarization: -46.67 SS G_CDS: 4.06 Total: -42.61 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.28 Total: -60.51 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -1.73 Total: -27.65 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -79.76 5.68 -74.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260347037.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.967 kcal (2) G-P(sol) polarization free energy of solvation -79.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds