Wall clock time and date at job start Mon Mar 30 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99906 * 2 1 4 4 C 1.50704 * 109.47137 * 180.02562 * 3 2 1 5 5 C 1.38283 * 119.97131 * 270.02284 * 4 3 2 6 6 C 1.38245 * 120.11012 * 180.02562 * 5 4 3 7 7 C 1.50703 * 119.97092 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.46969 * 89.99985 * 7 6 5 9 9 C 1.50698 * 109.46967 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00152 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99789 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00189 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99977 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47451 * 89.99996 * 13 11 9 15 15 H 1.48510 * 109.47095 * 209.99805 * 13 11 9 16 16 H 1.48496 * 109.47189 * 329.99768 * 13 11 9 17 17 C 1.38163 * 120.05744 * 359.68064 * 6 5 4 18 18 C 1.38715 * 119.93950 * 0.57174 * 17 6 5 19 19 O 1.35905 * 120.05074 * 179.72540 * 18 17 6 20 20 C 1.42901 * 116.99604 * 179.72595 * 19 18 17 21 21 C 1.38121 * 119.97060 * 89.99977 * 4 3 2 22 22 H 1.09002 * 109.47004 * 60.00051 * 1 2 3 23 23 H 1.08999 * 109.46893 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47169 * 300.00243 * 1 2 3 25 25 H 1.08996 * 109.47196 * 60.00059 * 3 2 1 26 26 H 1.09000 * 109.46997 * 299.99526 * 3 2 1 27 27 H 1.08001 * 119.94744 * 359.97438 * 5 4 3 28 28 H 1.09004 * 109.47137 * 209.99996 * 7 6 5 29 29 H 1.08999 * 109.47340 * 330.00019 * 7 6 5 30 30 H 1.08998 * 109.47201 * 300.00444 * 8 7 6 31 31 H 1.09008 * 109.46802 * 59.99871 * 8 7 6 32 32 H 0.97000 * 119.99897 * 180.02562 * 12 11 9 33 33 H 1.07998 * 120.02998 * 180.29532 * 17 6 5 34 34 H 1.08999 * 109.47144 * 59.99795 * 20 19 18 35 35 H 1.08995 * 109.47253 * 179.97438 * 20 19 18 36 36 H 1.08996 * 109.47352 * 299.99771 * 20 19 18 37 37 H 1.07994 * 120.03028 * 0.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2016 1.1313 1.1970 6 6 5.5798 1.0227 1.1998 7 6 6.3277 0.9633 2.5068 8 6 6.4674 -0.4948 2.9486 9 6 7.2159 -0.5542 4.2552 10 1 7.5573 0.3569 4.7239 11 6 7.4647 -1.7718 4.8524 12 7 7.0494 -2.8814 4.2814 13 14 8.3918 -1.8454 6.4724 14 1 7.4270 -1.7705 7.5988 15 1 9.1480 -3.1211 6.5525 16 1 9.3375 -0.7034 6.5539 17 6 6.2716 0.9624 0.0053 18 6 5.5831 1.0229 -1.1974 19 8 6.2618 0.9694 -2.3736 20 6 5.4871 1.0310 -3.5728 21 6 4.1999 1.1323 -1.1974 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 3.6624 1.1739 2.1318 28 1 7.3179 1.4008 2.3790 29 1 5.7789 1.5217 3.2651 30 1 5.4773 -0.9323 3.0763 31 1 7.0163 -1.0532 2.1901 32 1 7.2242 -3.7380 4.7017 33 1 7.3479 0.8728 0.0080 34 1 4.9305 1.9678 -3.5982 35 1 6.1499 0.9792 -4.4366 36 1 4.7901 0.1934 -3.5986 37 1 3.6612 1.1755 -2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260360611.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:39 Heat of formation + Delta-G solvation = -95.791907 kcal Electronic energy + Delta-G solvation = -17715.570100 eV Core-core repulsion = 14842.987580 eV Total energy + Delta-G solvation = -2872.582520 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23085 -39.19311 -38.33255 -35.85173 -34.08164 -32.26522 -30.45616 -28.70971 -27.83594 -26.86032 -26.20767 -23.61876 -22.71822 -21.23396 -18.72506 -18.26749 -17.54564 -17.35277 -16.96538 -16.61091 -16.49780 -16.30118 -16.09757 -14.99193 -14.82325 -14.27433 -14.23202 -13.74107 -13.60507 -13.27053 -13.10983 -12.83233 -12.74704 -12.64814 -12.38145 -12.31981 -11.96801 -11.87608 -11.69732 -11.43892 -11.15357 -10.64438 -10.55710 -9.67647 -9.13811 -8.18812 -6.31627 0.25790 0.46385 1.40955 1.43118 1.54359 2.35371 2.42285 2.58256 3.13913 3.20084 3.76863 3.82290 4.06425 4.25997 4.31176 4.33162 4.38674 4.41022 4.45419 4.55226 4.56782 4.62804 4.72907 4.78927 4.84597 4.87302 4.98989 5.14175 5.28307 5.47230 5.49595 5.56225 5.78694 5.83530 5.85601 6.22220 6.23138 6.46843 6.85295 7.37954 8.93135 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.005109 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.591267 B = 5479.029378 C = 6476.247645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.417 6.417 3 C 0.106 3.894 4 C -0.059 4.059 5 C -0.148 4.148 6 C -0.042 4.042 7 C -0.065 4.065 8 C 0.037 3.963 9 C -0.544 4.544 10 H 0.066 0.934 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.969 3.031 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.261 1.261 17 C -0.165 4.165 18 C 0.120 3.880 19 O -0.336 6.336 20 C 0.018 3.982 21 C -0.195 4.195 22 H 0.060 0.940 23 H 0.091 0.909 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.066 0.934 29 H 0.071 0.929 30 H -0.011 1.011 31 H -0.014 1.014 32 H 0.264 0.736 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.060 0.940 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.138 10.654 -13.862 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C 0.030 3.970 4 C -0.059 4.059 5 C -0.166 4.166 6 C -0.042 4.042 7 C -0.103 4.103 8 C 0.000 4.000 9 C -0.581 4.581 10 H 0.084 0.916 11 C -0.199 4.199 12 N -0.576 5.576 13 Si 0.793 3.207 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.185 1.185 17 C -0.184 4.184 18 C 0.075 3.925 19 O -0.251 6.251 20 C -0.076 4.076 21 C -0.214 4.214 22 H 0.079 0.921 23 H 0.109 0.891 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.142 0.858 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.007 0.993 31 H 0.005 0.995 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.078 0.922 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.834 10.301 -13.896 20.411 hybrid contribution 0.209 -0.392 0.763 0.883 sum -10.625 9.909 -13.133 19.585 Atomic orbital electron populations 1.22959 0.79116 1.03754 1.01304 1.87977 1.21794 1.28288 1.95661 1.21417 0.87933 0.85013 1.02621 1.19605 0.95385 0.98609 0.92347 1.20996 0.93345 1.03845 0.98398 1.19978 0.94243 0.95190 0.94824 1.20595 0.99010 0.98271 0.92395 1.18904 0.94879 0.91359 0.94853 1.21699 1.36153 0.93160 1.07129 0.91616 1.26042 0.96825 0.95252 1.01831 1.70135 1.47927 0.98376 1.41123 0.85386 0.78660 0.77796 0.78825 1.19608 1.20836 1.18471 1.20435 1.00521 1.07366 0.90077 1.18968 0.90983 0.96695 0.85837 1.86052 1.37244 1.88514 1.13241 1.23366 0.97846 1.02308 0.84127 1.21223 0.92290 1.08403 0.99478 0.92098 0.89095 0.93041 0.91105 0.89794 0.85836 0.91518 0.91044 0.99300 0.99516 0.92778 0.86000 0.91131 0.86102 0.92162 0.82788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.01 113.37 1.25 1.68 16 2 O -0.42 -11.42 10.69 -148.98 -1.59 -13.01 16 3 C 0.11 2.49 6.06 71.24 0.43 2.92 16 4 C -0.06 -1.81 5.51 -19.88 -0.11 -1.92 16 5 C -0.15 -5.31 9.35 22.28 0.21 -5.11 16 6 C -0.04 -1.69 5.13 -19.88 -0.10 -1.79 16 7 C -0.07 -2.89 5.28 29.85 0.16 -2.74 16 8 C 0.04 2.08 4.95 29.85 0.15 2.23 16 9 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 10 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 11 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 12 N -0.94 -59.13 13.29 21.45 0.28 -58.84 16 13 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 16 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 17 C -0.17 -6.31 9.64 22.37 0.22 -6.09 16 18 C 0.12 3.97 6.69 22.51 0.15 4.12 16 19 O -0.34 -9.83 10.50 -92.48 -0.97 -10.80 16 20 C 0.02 0.31 9.81 113.37 1.11 1.42 16 21 C -0.20 -5.60 8.69 22.36 0.19 -5.41 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 1.48 8.09 -2.39 -0.02 1.46 16 26 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 27 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 28 H 0.07 2.82 8.09 -2.38 -0.02 2.81 16 29 H 0.07 2.96 8.08 -2.39 -0.02 2.94 16 30 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 32 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 34 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 35 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 37 H 0.15 3.30 6.30 -2.91 -0.02 3.29 16 Total: -1.00 -72.86 317.01 5.13 -67.73 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.03 Total: 9.71 kcal Atomic # 6 Polarization: -46.37 SS G_CDS: 4.35 Total: -42.02 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.28 Total: -58.84 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -2.56 Total: -23.81 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -72.86 5.13 -67.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260360611.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.062 kcal (2) G-P(sol) polarization free energy of solvation -72.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds