Wall clock time and date at job start Mon Mar 30 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35994 * 116.99790 * 2 1 4 4 C 1.38556 * 120.07633 * 90.00051 * 3 2 1 5 5 C 1.50705 * 119.99833 * 359.95580 * 4 3 2 6 6 C 1.38246 * 120.00177 * 179.97438 * 4 3 2 7 7 C 1.38246 * 120.14561 * 359.97438 * 6 4 3 8 8 C 1.50697 * 119.92686 * 180.02562 * 7 6 4 9 9 C 1.52993 * 109.47269 * 4.27586 * 8 7 6 10 10 C 1.53001 * 109.47090 * 244.27482 * 8 7 6 11 11 C 1.50701 * 109.47267 * 124.27918 * 8 7 6 12 12 H 1.07997 * 119.99943 * 0.03794 * 11 8 7 13 13 C 1.37881 * 119.99979 * 179.77290 * 11 8 7 14 14 N 1.31508 * 120.00050 * 0.26570 * 13 11 8 15 15 Si 1.86801 * 119.99942 * 180.27079 * 13 11 8 16 16 H 1.48502 * 109.46875 * 89.99232 * 15 13 11 17 17 H 1.48501 * 109.47172 * 209.99378 * 15 13 11 18 18 H 1.48497 * 109.47059 * 329.99782 * 15 13 11 19 19 C 1.38249 * 120.14677 * 0.27902 * 7 6 4 20 20 C 1.38568 * 119.99700 * 359.49238 * 19 7 6 21 21 O 1.35994 * 120.07252 * 180.25129 * 20 19 7 22 22 H 1.08999 * 109.47172 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46974 * 300.00063 * 1 2 3 24 24 H 1.08999 * 109.47103 * 60.00237 * 1 2 3 25 25 H 1.09006 * 109.46702 * 270.01971 * 5 4 3 26 26 H 1.08993 * 109.47127 * 30.01954 * 5 4 3 27 27 H 1.08999 * 109.47235 * 150.02367 * 5 4 3 28 28 H 1.08003 * 119.92378 * 180.02562 * 6 4 3 29 29 H 1.08996 * 109.47590 * 180.02562 * 9 8 7 30 30 H 1.09005 * 109.47038 * 300.00323 * 9 8 7 31 31 H 1.09001 * 109.47265 * 59.99673 * 9 8 7 32 32 H 1.09001 * 109.46940 * 299.99907 * 10 8 7 33 33 H 1.09000 * 109.47259 * 60.00003 * 10 8 7 34 34 H 1.09003 * 109.47159 * 180.02562 * 10 8 7 35 35 H 0.96998 * 120.00557 * 180.02562 * 14 13 11 36 36 H 1.07996 * 119.99796 * 179.74404 * 19 7 6 37 37 H 0.96692 * 114.00172 * 270.23501 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3616 1.8304 1.1990 5 6 2.0195 1.1610 2.5051 6 6 2.9897 3.0620 1.1972 7 6 3.3051 3.6787 0.0008 8 6 3.9902 5.0210 0.0046 9 6 4.3157 5.4234 1.4443 10 6 3.0656 6.0673 -0.6208 11 6 5.2655 4.9363 -0.7938 12 1 5.5510 4.0039 -1.2582 13 6 6.0651 6.0505 -0.9361 14 7 5.7175 7.1858 -0.3707 15 14 7.6420 5.9475 -1.9322 16 1 7.3540 6.2791 -3.3508 17 1 8.6337 6.9108 -1.3901 18 1 8.1919 4.5707 -1.8475 19 6 2.9887 3.0693 -1.1991 20 6 2.3634 1.8327 -1.2043 21 8 2.0561 1.2295 -2.3838 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.0214 1.4665 2.8194 26 1 2.0445 0.0790 2.3763 27 1 2.7448 1.4535 3.2643 28 1 3.2352 3.5429 2.1326 29 1 4.8108 6.3944 1.4472 30 1 3.3932 5.4846 2.0218 31 1 4.9744 4.6779 1.8899 32 1 2.8338 5.7806 -1.6466 33 1 2.1432 6.1286 -0.0434 34 1 3.5614 7.0381 -0.6185 35 1 6.2797 7.9698 -0.4711 36 1 3.2325 3.5552 -2.1322 37 1 1.1803 1.4564 -2.7251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260360890.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:36 Heat of formation + Delta-G solvation = -66.086212 kcal Electronic energy + Delta-G solvation = -18857.961523 eV Core-core repulsion = 15986.667139 eV Total energy + Delta-G solvation = -2871.294384 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.01775 -37.54228 -36.82451 -34.78834 -31.91799 -30.82196 -28.42813 -27.27502 -26.05543 -25.43945 -25.05309 -22.12639 -21.15249 -19.01841 -17.67188 -17.06138 -16.09429 -15.77420 -15.40639 -14.95567 -14.21293 -13.97886 -13.83305 -13.20903 -13.00518 -12.74708 -12.40814 -12.05734 -11.90447 -11.50857 -11.28895 -11.16565 -11.13195 -10.88441 -10.77064 -10.54410 -10.43045 -10.16269 -9.68646 -9.60495 -9.25304 -8.88428 -8.37857 -8.04477 -7.69195 -6.01307 -4.11273 1.73138 1.81497 3.28860 3.35916 3.41043 3.88653 4.24283 4.42009 4.55996 5.23651 5.25875 5.32205 5.34827 5.48265 5.56703 5.77275 5.87641 5.96031 6.04343 6.13716 6.26285 6.46025 6.67077 6.75152 6.81145 6.91337 6.94628 7.01369 7.22994 7.32426 7.37305 7.59081 7.61533 7.72709 8.00770 8.14007 8.17219 8.39305 8.89081 9.54233 10.99712 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.029390 B = 0.006582 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.461962 B = 4253.127765 C = 4668.194894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.327 6.327 3 C 0.035 3.965 4 C -0.096 4.096 5 C -0.106 4.106 6 C -0.128 4.128 7 C -0.010 4.010 8 C 0.094 3.906 9 C -0.133 4.133 10 C -0.126 4.126 11 C -0.501 4.501 12 H 0.058 0.942 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.128 4.128 20 C 0.082 3.918 21 O -0.491 6.491 22 H 0.087 0.913 23 H 0.042 0.958 24 H 0.038 0.962 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.130 0.870 29 H 0.087 0.913 30 H 0.012 0.988 31 H 0.029 0.971 32 H 0.027 0.973 33 H 0.009 0.991 34 H 0.088 0.912 35 H 0.260 0.740 36 H 0.133 0.867 37 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.048 -7.806 2.323 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C -0.009 4.009 4 C -0.096 4.096 5 C -0.163 4.163 6 C -0.146 4.146 7 C -0.010 4.010 8 C 0.094 3.906 9 C -0.191 4.191 10 C -0.184 4.184 11 C -0.539 4.539 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.146 4.146 20 C 0.038 3.962 21 O -0.300 6.300 22 H 0.105 0.895 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.148 0.852 29 H 0.105 0.895 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.028 0.972 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.151 0.849 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.328 -8.047 2.403 12.551 hybrid contribution 0.249 0.300 -0.728 0.826 sum -9.078 -7.747 1.676 12.051 Atomic orbital electron populations 1.22877 0.80668 1.02353 1.00036 1.86077 1.18725 1.25283 1.94337 1.18632 1.02450 0.88120 0.91690 1.20008 1.00490 0.94962 0.94174 1.20634 1.01153 1.00585 0.93917 1.21149 1.00200 0.94059 0.99221 1.20610 0.91761 0.97663 0.90990 1.17291 0.93072 0.85925 0.94317 1.21901 0.97761 1.03523 0.95905 1.21811 0.96120 1.03092 0.97390 1.21079 1.04815 0.96490 1.31546 0.92404 1.24893 0.97746 0.95334 0.95531 1.69800 1.37997 1.00725 1.43970 0.86590 0.83219 0.77964 0.80276 1.20681 1.21214 1.19900 1.21297 1.00246 0.93169 0.99935 1.18794 1.01285 0.91911 0.84235 1.84892 1.38475 1.70605 1.35982 0.89464 0.93972 0.94360 0.91965 0.91395 0.91527 0.85229 0.89472 0.96863 0.95139 0.95352 0.97156 0.89308 0.92962 0.84935 0.76973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 11.13 101.05 1.12 1.54 16 2 O -0.33 -5.35 9.25 -34.22 -0.32 -5.66 16 3 C 0.03 0.62 5.71 -39.12 -0.22 0.40 16 4 C -0.10 -1.67 5.89 -104.50 -0.62 -2.29 16 5 C -0.11 -1.46 9.79 36.01 0.35 -1.11 16 6 C -0.13 -2.47 8.63 -39.58 -0.34 -2.81 16 7 C -0.01 -0.22 4.72 -104.62 -0.49 -0.71 16 8 C 0.09 2.23 0.58 -156.82 -0.09 2.14 16 9 C -0.13 -3.06 6.92 37.15 0.26 -2.80 16 10 C -0.13 -2.92 8.10 37.16 0.30 -2.62 16 11 C -0.50 -13.21 7.58 -34.44 -0.26 -13.47 16 12 H 0.06 1.57 7.48 -52.49 -0.39 1.18 16 13 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 14 N -0.89 -23.67 9.35 55.43 0.52 -23.15 16 15 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.13 -2.63 8.54 -39.46 -0.34 -2.97 16 20 C 0.08 1.55 6.72 -39.12 -0.26 1.29 16 21 O -0.49 -8.26 13.29 -34.23 -0.45 -8.72 16 22 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 27 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 28 H 0.13 2.36 5.89 -52.48 -0.31 2.05 16 29 H 0.09 2.19 6.08 -51.93 -0.32 1.88 16 30 H 0.01 0.26 7.31 -51.93 -0.38 -0.12 16 31 H 0.03 0.68 7.71 -51.93 -0.40 0.28 16 32 H 0.03 0.63 7.63 -51.93 -0.40 0.23 16 33 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 2.24 6.06 -51.93 -0.31 1.92 16 35 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.13 2.78 7.71 -52.49 -0.40 2.38 16 37 H 0.38 4.35 9.06 45.56 0.41 4.76 16 LS Contribution 301.77 15.07 4.55 4.55 Total: -1.00 -29.06 301.77 -5.97 -35.02 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.56 Total: 3.82 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -0.68 Total: -21.77 kcal Atomic # 7 Polarization: -23.67 SS G_CDS: 0.52 Total: -23.15 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.77 Total: -14.38 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.06 -5.97 -35.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260360890.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.062 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds