Wall clock time and date at job start Mon Mar 30 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35997 * 117.00138 * 2 1 4 4 C 1.38562 * 120.07020 * 89.99557 * 3 2 1 5 5 C 1.50692 * 120.00660 * 359.97438 * 4 3 2 6 6 C 1.38247 * 119.99285 * 179.97438 * 4 3 2 7 7 C 1.50706 * 119.92513 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47002 * 354.29183 * 7 6 4 9 9 C 1.52988 * 109.47223 * 114.29318 * 7 6 4 10 10 C 1.50704 * 109.46956 * 234.29899 * 7 6 4 11 11 H 1.07998 * 120.00067 * 359.97438 * 10 7 6 12 12 C 1.37877 * 119.99356 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00434 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 119.99438 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.46776 * 90.00432 * 14 12 10 16 16 H 1.48500 * 109.46928 * 209.99970 * 14 12 10 17 17 H 1.48497 * 109.47251 * 330.00314 * 14 12 10 18 18 C 1.38253 * 120.14917 * 359.97438 * 6 4 3 19 19 C 1.38235 * 120.14481 * 359.97438 * 18 6 4 20 20 C 1.50707 * 119.99945 * 180.02562 * 19 18 6 21 21 C 1.38566 * 120.00132 * 0.27670 * 19 18 6 22 22 O 1.35997 * 120.07376 * 179.74549 * 21 19 18 23 23 H 1.08998 * 109.46950 * 300.00662 * 1 2 3 24 24 H 1.09003 * 109.46471 * 60.00275 * 1 2 3 25 25 H 1.08990 * 109.47072 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47285 * 264.41200 * 5 4 3 27 27 H 1.09003 * 109.46983 * 24.40355 * 5 4 3 28 28 H 1.08996 * 109.47689 * 144.40604 * 5 4 3 29 29 H 1.08997 * 109.47397 * 300.00268 * 9 7 6 30 30 H 1.09004 * 109.47242 * 60.00012 * 9 7 6 31 31 H 1.09001 * 109.47265 * 179.97438 * 9 7 6 32 32 H 0.96998 * 120.00043 * 180.02562 * 13 12 10 33 33 H 1.07999 * 119.92547 * 180.02562 * 18 6 4 34 34 H 1.09001 * 109.47183 * 89.99549 * 20 19 18 35 35 H 1.08997 * 109.47267 * 210.00131 * 20 19 18 36 36 H 1.09004 * 109.46925 * 329.99776 * 20 19 18 37 37 H 0.96700 * 114.00068 * 89.99907 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 2.3616 1.8304 1.1991 5 6 2.0197 1.1609 2.5052 6 6 2.9898 3.0619 1.1973 7 6 3.3323 3.7331 2.5024 8 1 2.9216 3.1525 3.3284 9 6 4.8528 3.8207 2.6471 10 6 2.7448 5.1208 2.5229 11 1 2.1803 5.4808 1.6756 12 6 2.9282 5.9306 3.6236 13 7 3.6161 5.4924 4.6553 14 14 2.2006 7.6510 3.6489 15 1 0.8321 7.6012 4.2234 16 1 3.0544 8.5374 4.4799 17 1 2.1368 8.1818 2.2635 18 6 3.3053 3.6786 0.0008 19 6 2.9946 3.0663 -1.1989 20 6 3.3406 3.7413 -2.5012 21 6 2.3604 1.8343 -1.2042 22 8 2.0494 1.2330 -2.3837 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.0656 1.5414 2.8697 27 1 1.9471 0.0840 2.3533 28 1 2.7990 1.3729 3.2372 29 1 5.2777 2.8171 2.6322 30 1 5.2636 4.4014 1.8211 31 1 5.1006 4.3066 3.5909 32 1 3.7447 6.0621 5.4298 33 1 3.7964 4.6405 0.0036 34 1 4.3396 3.4371 -2.8139 35 1 2.6174 3.4521 -3.2637 36 1 3.3152 4.8228 -2.3679 37 1 2.7448 0.6547 -2.7258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260389664.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:27 Heat of formation + Delta-G solvation = -74.321986 kcal Electronic energy + Delta-G solvation = -18840.955091 eV Core-core repulsion = 15969.303577 eV Total energy + Delta-G solvation = -2871.651514 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06017 -37.34171 -36.90084 -34.00123 -32.63439 -30.78533 -28.88703 -27.88747 -26.42735 -25.14325 -24.29523 -22.58510 -20.74720 -19.36987 -17.62993 -16.79776 -16.49576 -15.60907 -15.34918 -14.82547 -14.54685 -13.94973 -13.37336 -13.22036 -12.92938 -12.72922 -12.48871 -12.32229 -11.92238 -11.72747 -11.53960 -11.30125 -11.16206 -11.08418 -10.92047 -10.64512 -10.38754 -10.22881 -10.08010 -9.69497 -9.21038 -8.94928 -8.38108 -7.89771 -7.59918 -6.04402 -4.10687 1.70633 1.82117 3.27586 3.34599 3.37872 3.84567 4.33001 4.40975 4.65913 5.24784 5.27415 5.48056 5.53723 5.55337 5.71983 5.75851 5.76947 5.86296 6.02358 6.05070 6.20514 6.22463 6.29729 6.52244 6.69957 6.79847 6.87903 6.92865 7.05275 7.16397 7.27557 7.39785 7.67799 7.70324 7.93430 8.05168 8.15036 8.36554 8.91576 9.53802 11.01390 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023799 B = 0.007018 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.252663 B = 3988.670236 C = 4464.037335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.334 6.334 3 C 0.064 3.936 4 C -0.104 4.104 5 C -0.107 4.107 6 C -0.024 4.024 7 C 0.068 3.932 8 H 0.045 0.955 9 C -0.132 4.132 10 C -0.508 4.508 11 H 0.057 0.943 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.097 4.097 19 C -0.112 4.112 20 C -0.105 4.105 21 C 0.059 3.941 22 O -0.493 6.493 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.009 0.991 30 H 0.028 0.972 31 H 0.086 0.914 32 H 0.261 0.739 33 H 0.130 0.870 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 -7.592 -9.218 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.251 6.251 3 C 0.020 3.980 4 C -0.105 4.105 5 C -0.164 4.164 6 C -0.024 4.024 7 C 0.049 3.951 8 H 0.063 0.937 9 C -0.190 4.190 10 C -0.546 4.546 11 H 0.075 0.925 12 C -0.139 4.139 13 N -0.528 5.528 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.162 4.162 21 C 0.014 3.986 22 O -0.302 6.302 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.028 0.972 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.148 -7.395 -8.980 11.830 hybrid contribution -0.168 0.892 -0.032 0.909 sum -2.316 -6.502 -9.012 11.352 Atomic orbital electron populations 1.22892 0.79709 1.02224 1.00638 1.85915 1.19442 1.25326 1.94405 1.18795 1.00761 0.86805 0.91613 1.20037 1.01108 0.95020 0.94312 1.20669 1.02232 0.99218 0.94236 1.20514 0.92549 0.91482 0.97835 1.17985 0.93623 0.95207 0.88240 0.93713 1.21783 0.96878 0.97242 1.03065 1.21124 1.33287 0.98010 1.02170 0.92455 1.24940 0.95127 0.98278 0.95509 1.69876 1.40141 1.36785 1.06000 0.86601 0.79055 0.84364 0.78067 1.20705 1.21192 1.19881 1.20946 0.99998 1.00145 0.90393 1.20072 0.99944 0.95081 0.96208 1.20605 1.01131 1.00146 0.94289 1.18390 1.03178 0.92852 0.84167 1.84762 1.45160 1.64324 1.35936 0.93776 0.93708 0.89580 0.91644 0.92125 0.90465 0.97226 0.95299 0.89511 0.92917 0.85227 0.91879 0.91535 0.91567 0.76773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 11.13 101.05 1.13 1.68 16 2 O -0.33 -5.70 9.15 -34.24 -0.31 -6.01 16 3 C 0.06 1.19 5.71 -39.12 -0.22 0.97 16 4 C -0.10 -2.08 5.89 -104.50 -0.62 -2.70 16 5 C -0.11 -1.94 8.98 36.00 0.32 -1.62 16 6 C -0.02 -0.51 4.76 -104.61 -0.50 -1.01 16 7 C 0.07 1.64 2.21 -92.92 -0.20 1.44 16 8 H 0.04 1.15 5.71 -51.93 -0.30 0.85 16 9 C -0.13 -3.12 8.84 37.15 0.33 -2.79 16 10 C -0.51 -13.51 8.08 -34.44 -0.28 -13.79 16 11 H 0.06 1.53 7.43 -52.49 -0.39 1.14 16 12 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 13 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 14 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 C -0.10 -1.94 8.23 -39.58 -0.33 -2.27 16 19 C -0.11 -1.99 5.89 -104.50 -0.62 -2.61 16 20 C -0.10 -1.48 9.79 36.01 0.35 -1.13 16 21 C 0.06 1.04 6.69 -39.12 -0.26 0.78 16 22 O -0.49 -7.48 12.33 -34.23 -0.42 -7.90 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.06 0.99 7.36 -51.93 -0.38 0.61 16 28 H 0.08 1.45 6.53 -51.93 -0.34 1.11 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.03 0.65 7.73 -51.93 -0.40 0.24 16 31 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 33 H 0.13 2.61 7.75 -52.49 -0.41 2.20 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 36 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.38 4.11 9.06 45.56 0.41 4.52 16 LS Contribution 305.58 15.07 4.61 4.61 Total: -1.00 -29.28 305.58 -6.11 -35.39 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.60 Total: 3.49 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -0.99 Total: -21.45 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.63 Total: -24.04 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.74 Total: -13.91 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.28 -6.11 -35.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389664.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.928 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds