Wall clock time and date at job start Mon Mar 30 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35997 * 117.00138 * 2 1 4 4 C 1.38562 * 120.07020 * 89.99557 * 3 2 1 5 5 C 1.50692 * 120.00660 * 359.97438 * 4 3 2 6 6 C 1.38247 * 119.99285 * 179.97438 * 4 3 2 7 7 C 1.50706 * 119.92513 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47002 * 354.29183 * 7 6 4 9 9 C 1.52988 * 109.47223 * 114.29318 * 7 6 4 10 10 C 1.50704 * 109.46956 * 234.29899 * 7 6 4 11 11 H 1.07998 * 120.00067 * 359.97438 * 10 7 6 12 12 C 1.37877 * 119.99356 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00434 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 119.99438 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.46776 * 90.00432 * 14 12 10 16 16 H 1.48500 * 109.46928 * 209.99970 * 14 12 10 17 17 H 1.48497 * 109.47251 * 330.00314 * 14 12 10 18 18 C 1.38253 * 120.14917 * 359.97438 * 6 4 3 19 19 C 1.38235 * 120.14481 * 359.97438 * 18 6 4 20 20 C 1.50707 * 119.99945 * 180.02562 * 19 18 6 21 21 C 1.38566 * 120.00132 * 0.27670 * 19 18 6 22 22 O 1.35997 * 120.07376 * 179.74549 * 21 19 18 23 23 H 1.08998 * 109.46950 * 300.00662 * 1 2 3 24 24 H 1.09003 * 109.46471 * 60.00275 * 1 2 3 25 25 H 1.08990 * 109.47072 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47285 * 264.41200 * 5 4 3 27 27 H 1.09003 * 109.46983 * 24.40355 * 5 4 3 28 28 H 1.08996 * 109.47689 * 144.40604 * 5 4 3 29 29 H 1.08997 * 109.47397 * 300.00268 * 9 7 6 30 30 H 1.09004 * 109.47242 * 60.00012 * 9 7 6 31 31 H 1.09001 * 109.47265 * 179.97438 * 9 7 6 32 32 H 0.96998 * 120.00043 * 180.02562 * 13 12 10 33 33 H 1.07999 * 119.92547 * 180.02562 * 18 6 4 34 34 H 1.09001 * 109.47183 * 89.99549 * 20 19 18 35 35 H 1.08997 * 109.47267 * 210.00131 * 20 19 18 36 36 H 1.09004 * 109.46925 * 329.99776 * 20 19 18 37 37 H 0.96700 * 114.00068 * 89.99907 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 2.3616 1.8304 1.1991 5 6 2.0197 1.1609 2.5052 6 6 2.9898 3.0619 1.1973 7 6 3.3323 3.7331 2.5024 8 1 2.9216 3.1525 3.3284 9 6 4.8528 3.8207 2.6471 10 6 2.7448 5.1208 2.5229 11 1 2.1803 5.4808 1.6756 12 6 2.9282 5.9306 3.6236 13 7 3.6161 5.4924 4.6553 14 14 2.2006 7.6510 3.6489 15 1 0.8321 7.6012 4.2234 16 1 3.0544 8.5374 4.4799 17 1 2.1368 8.1818 2.2635 18 6 3.3053 3.6786 0.0008 19 6 2.9946 3.0663 -1.1989 20 6 3.3406 3.7413 -2.5012 21 6 2.3604 1.8343 -1.2042 22 8 2.0494 1.2330 -2.3837 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.0656 1.5414 2.8697 27 1 1.9471 0.0840 2.3533 28 1 2.7990 1.3729 3.2372 29 1 5.2777 2.8171 2.6322 30 1 5.2636 4.4014 1.8211 31 1 5.1006 4.3066 3.5909 32 1 3.7447 6.0621 5.4298 33 1 3.7964 4.6405 0.0036 34 1 4.3396 3.4371 -2.8139 35 1 2.6174 3.4521 -3.2637 36 1 3.3152 4.8228 -2.3679 37 1 2.7448 0.6547 -2.7258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389664.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:27 Heat of formation + Delta-G solvation = -91.481964 kcal Electronic energy + Delta-G solvation = -18841.699204 eV Core-core repulsion = 15969.303577 eV Total energy + Delta-G solvation = -2872.395627 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46107 -38.70205 -38.29042 -35.74410 -34.14063 -32.58927 -30.20392 -29.39409 -27.65495 -27.17963 -25.67514 -24.20787 -22.24847 -20.95143 -18.97209 -18.49223 -17.92209 -17.28654 -16.66285 -16.61124 -15.94472 -15.27302 -14.96826 -14.69853 -14.47407 -13.99770 -13.94327 -13.83077 -13.40516 -13.20565 -12.99257 -12.88541 -12.82808 -12.71665 -12.51382 -12.30795 -12.11475 -11.81382 -11.77184 -11.33056 -10.90687 -10.64853 -10.40561 -9.33512 -9.10500 -8.08969 -6.21592 0.26442 0.37570 1.40786 1.42543 1.51903 2.38508 2.51379 2.97703 3.19362 3.35216 3.93216 4.12324 4.31114 4.34642 4.46054 4.50605 4.52745 4.70292 4.74763 4.76043 4.79729 4.83630 4.93729 4.98961 5.06184 5.20748 5.23240 5.37275 5.40615 5.55032 5.56588 5.68710 5.84443 6.07683 6.09559 6.36510 6.48375 6.86398 6.93148 7.45566 8.95662 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023799 B = 0.007018 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.252663 B = 3988.670236 C = 4464.037335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.340 6.340 3 C 0.063 3.937 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.049 4.049 7 C 0.070 3.930 8 H 0.023 0.977 9 C -0.122 4.122 10 C -0.520 4.520 11 H 0.050 0.950 12 C 0.017 3.983 13 N -0.915 5.915 14 Si 0.949 3.051 15 H -0.279 1.279 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.110 4.110 19 C -0.110 4.110 20 C -0.101 4.101 21 C 0.067 3.933 22 O -0.491 6.491 23 H 0.040 0.960 24 H 0.043 0.957 25 H 0.120 0.880 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.023 0.977 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.262 0.738 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.390 -8.155 -11.151 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.258 6.258 3 C 0.019 3.981 4 C -0.121 4.121 5 C -0.156 4.156 6 C -0.049 4.049 7 C 0.052 3.948 8 H 0.041 0.959 9 C -0.180 4.180 10 C -0.558 4.558 11 H 0.068 0.932 12 C -0.182 4.182 13 N -0.555 5.555 14 Si 0.775 3.225 15 H -0.205 1.205 16 H -0.208 1.208 17 H -0.194 1.194 18 C -0.128 4.128 19 C -0.110 4.110 20 C -0.158 4.158 21 C 0.022 3.978 22 O -0.303 6.303 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.138 0.862 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.139 0.861 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.778 -7.974 -10.931 13.813 hybrid contribution -0.011 0.954 0.479 1.068 sum -2.788 -7.020 -10.452 12.896 Atomic orbital electron populations 1.23119 0.77849 1.04437 1.00435 1.85894 1.21114 1.24365 1.94388 1.18867 1.00639 0.87151 0.91473 1.20162 1.01474 0.94869 0.95565 1.20598 1.01520 1.00159 0.93365 1.20298 0.94928 0.92658 0.97023 1.17816 0.93520 0.94176 0.89337 0.95899 1.21626 0.96941 0.97739 1.01654 1.21382 1.33169 0.99319 1.01906 0.93194 1.25643 0.95572 1.01667 0.95272 1.69994 1.41092 1.37941 1.06428 0.85687 0.78288 0.80341 0.78160 1.20457 1.20755 1.19372 1.20914 1.00842 1.00065 0.90969 1.20357 0.98798 0.95062 0.96800 1.20660 1.02611 1.00030 0.92465 1.18410 1.01892 0.92768 0.84738 1.84705 1.46287 1.64675 1.34607 0.94082 0.93809 0.86229 0.91849 0.90333 0.91918 0.95830 0.95053 0.91995 0.92917 0.86112 0.89687 0.90423 0.91299 0.74109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 11.13 113.37 1.26 2.15 16 2 O -0.34 -10.83 9.15 -79.65 -0.73 -11.56 16 3 C 0.06 2.24 5.71 22.57 0.13 2.37 16 4 C -0.12 -4.78 5.89 -19.79 -0.12 -4.90 16 5 C -0.10 -3.65 8.98 71.23 0.64 -3.01 16 6 C -0.05 -2.14 4.76 -19.86 -0.09 -2.24 16 7 C 0.07 3.49 2.21 -12.29 -0.03 3.46 16 8 H 0.02 1.23 5.71 -2.39 -0.01 1.22 16 9 C -0.12 -5.91 8.84 71.98 0.64 -5.27 16 10 C -0.52 -28.25 8.08 25.60 0.21 -28.05 16 11 H 0.05 2.72 7.43 -2.91 -0.02 2.70 16 12 C 0.02 0.94 5.30 84.66 0.45 1.39 16 13 N -0.91 -51.87 11.32 21.45 0.24 -51.63 16 14 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 C -0.11 -4.38 8.23 22.27 0.18 -4.20 16 19 C -0.11 -3.68 5.89 -19.78 -0.12 -3.79 16 20 C -0.10 -2.56 9.79 71.24 0.70 -1.86 16 21 C 0.07 2.21 6.69 22.57 0.15 2.37 16 22 O -0.49 -13.18 12.33 -79.65 -0.98 -14.17 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.08 2.50 7.36 -2.39 -0.02 2.49 16 28 H 0.06 2.43 6.53 -2.39 -0.02 2.42 16 29 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.03 1.44 7.73 -2.39 -0.02 1.42 16 31 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 32 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.12 4.92 7.75 -2.91 -0.02 4.90 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.81 7.52 -2.39 -0.02 1.79 16 36 H 0.07 1.71 8.09 -2.38 -0.02 1.69 16 37 H 0.40 7.13 9.06 -74.06 -0.67 6.46 16 Total: -1.00 -62.50 305.58 4.96 -57.54 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.40 Total: 16.12 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 4.00 Total: -41.57 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.24 Total: -51.63 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -1.71 Total: -25.73 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -62.50 4.96 -57.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389664.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.941 kcal (2) G-P(sol) polarization free energy of solvation -62.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds