Wall clock time and date at job start Mon Mar 30 2020 06:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46773 * 2 1 4 4 C 1.50699 * 109.47134 * 119.99992 * 2 1 3 5 5 C 1.34441 * 125.78640 * 119.99976 * 4 2 1 6 6 C 1.41513 * 106.80135 * 179.69962 * 5 4 2 7 7 C 1.34287 * 107.02502 * 0.26067 * 6 5 4 8 8 O 1.34201 * 125.78638 * 300.15341 * 4 2 1 9 9 C 1.51441 * 110.25417 * 180.02562 * 7 6 5 10 10 O 1.42899 * 110.42129 * 102.03990 * 9 7 6 11 11 C 1.50697 * 110.33397 * 224.23849 * 9 7 6 12 12 H 1.07997 * 119.99916 * 115.57758 * 11 9 7 13 13 C 1.37875 * 120.00082 * 295.56769 * 11 9 7 14 14 N 1.31510 * 119.99979 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00119 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47372 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47437 * 120.00722 * 15 13 11 18 18 H 1.48505 * 109.47174 * 240.00452 * 15 13 11 19 19 C 1.54456 * 104.99546 * 343.11865 * 9 7 6 20 20 H 1.08999 * 110.94694 * 267.42053 * 19 9 7 21 21 C 1.53000 * 110.97974 * 143.73132 * 19 9 7 22 22 C 1.51198 * 142.39330 * 180.22578 * 6 5 4 23 23 H 1.09003 * 109.47190 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47332 * 300.00076 * 1 2 3 25 25 H 1.09001 * 109.46906 * 60.00340 * 1 2 3 26 26 H 1.09001 * 109.47071 * 240.00408 * 2 1 3 27 27 H 1.09003 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47379 * 299.99982 * 3 2 1 29 29 H 1.09001 * 109.47253 * 59.99876 * 3 2 1 30 30 H 1.08002 * 126.60147 * 359.97101 * 5 4 2 31 31 H 0.96698 * 114.00126 * 64.37927 * 10 9 7 32 32 H 0.97002 * 120.00282 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.46674 * 306.03957 * 21 19 9 34 34 H 1.09000 * 109.47158 * 66.03876 * 21 19 9 35 35 H 1.08994 * 109.47029 * 186.04571 * 21 19 9 36 36 H 1.08991 * 110.35512 * 315.73702 * 22 6 5 37 37 H 1.09005 * 110.34841 * 78.01726 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8086 -1.8081 1.2427 6 6 3.0434 -2.1279 2.6011 7 6 2.3939 -1.2126 3.3384 8 8 1.7784 -0.3563 2.4997 9 6 2.5978 -1.4872 4.8137 10 8 3.5730 -0.5950 5.3568 11 6 1.2938 -1.3518 5.5567 12 1 0.8548 -2.2129 6.0384 13 6 0.6612 -0.1284 5.6218 14 7 1.1956 0.9202 5.0350 15 14 -0.9549 0.0397 6.5434 16 1 -1.3405 -1.2774 7.1108 17 1 -0.7974 1.0250 7.6433 18 1 -2.0113 0.5052 5.6094 19 6 3.1060 -2.9441 4.8825 20 1 2.2777 -3.6399 5.0164 21 6 4.1422 -3.1109 5.9958 22 6 3.7553 -3.1204 3.4922 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1845 -2.3405 0.3816 31 1 3.3080 0.3349 5.3399 32 1 0.7504 1.7808 5.0804 33 1 4.9387 -2.3786 5.8634 34 1 3.6641 -2.9567 6.9632 35 1 4.5620 -4.1159 5.9539 36 1 3.6014 -4.1358 3.1274 37 1 4.8199 -2.8912 3.5400 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260458722.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:11 Heat of formation + Delta-G solvation = -40.009463 kcal Electronic energy + Delta-G solvation = -19396.436813 eV Core-core repulsion = 16526.273202 eV Total energy + Delta-G solvation = -2870.163612 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.60505 -37.51646 -34.93205 -33.83462 -32.12378 -31.15207 -28.63340 -27.07009 -26.86641 -25.00382 -23.38641 -21.25275 -20.11156 -18.97841 -18.03431 -17.11128 -16.08336 -15.01864 -14.85795 -14.60965 -14.14672 -13.90487 -13.23772 -13.13063 -12.71172 -12.24937 -12.08967 -11.89248 -11.85918 -11.61605 -11.43800 -11.10852 -11.00926 -10.91267 -10.81868 -10.57248 -10.43563 -10.31707 -10.22525 -10.08613 -9.34466 -8.61795 -8.55383 -8.35277 -7.09187 -6.23329 -4.34456 2.85923 3.20829 3.29281 3.33256 3.60859 3.80287 4.28896 4.99155 5.05844 5.23844 5.44055 5.51881 5.75057 5.83579 5.86737 5.87928 5.92644 6.06037 6.10627 6.13767 6.21304 6.30252 6.42503 6.52651 6.53308 6.55581 6.64448 6.68690 6.90222 7.05167 7.14628 7.34319 7.40075 7.56601 7.74750 7.97011 8.50543 8.68470 9.31085 9.41966 10.81487 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016640 B = 0.011076 C = 0.007567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.298378 B = 2527.461375 C = 3699.261817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.003 4.003 3 C -0.146 4.146 4 C -0.047 4.047 5 C -0.193 4.193 6 C -0.264 4.264 7 C 0.038 3.962 8 O -0.124 6.124 9 C 0.331 3.669 10 O -0.573 6.573 11 C -0.545 4.545 12 H 0.067 0.933 13 C 0.074 3.926 14 N -0.875 5.875 15 Si 0.900 3.100 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.070 4.070 20 H 0.081 0.919 21 C -0.122 4.122 22 C -0.038 4.038 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.127 0.873 31 H 0.384 0.616 32 H 0.269 0.731 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.054 0.946 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.482 -2.203 -6.672 7.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 C -0.203 4.203 4 C -0.098 4.098 5 C -0.212 4.212 6 C -0.265 4.265 7 C -0.015 4.015 8 O -0.017 6.017 9 C 0.291 3.709 10 O -0.383 6.383 11 C -0.582 4.582 12 H 0.086 0.914 13 C -0.130 4.130 14 N -0.513 5.513 15 Si 0.727 3.273 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.088 4.088 20 H 0.100 0.900 21 C -0.179 4.179 22 C -0.075 4.075 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.145 0.855 31 H 0.236 0.764 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.606 -2.301 -6.519 7.097 hybrid contribution -1.230 0.589 0.007 1.364 sum 0.377 -1.712 -6.512 6.743 Atomic orbital electron populations 1.21845 0.94447 1.02062 1.02013 1.19517 0.95805 0.95519 0.91295 1.21837 1.01188 0.95222 1.02050 1.22126 1.03995 0.98436 0.85217 1.20632 1.05265 0.99500 0.95810 1.21108 1.08379 1.03934 0.93094 1.25072 0.91612 0.87798 0.97045 1.84028 1.57627 1.46703 1.13343 1.17838 0.87466 0.85936 0.79707 1.86168 1.45973 1.22325 1.83787 1.21729 1.06319 0.95856 1.34324 0.91447 1.25051 0.97878 0.95728 0.94388 1.69600 1.39662 1.00452 1.41611 0.86406 0.82991 0.78363 0.79508 1.19536 1.20687 1.20827 1.21835 0.97798 0.95521 0.93681 0.90046 1.21441 0.98815 0.99444 0.98227 1.20466 0.98171 0.95978 0.92920 0.92588 0.91850 0.92588 0.89519 0.92594 0.92630 0.91727 0.85497 0.76396 0.92085 0.91866 0.92461 0.94269 0.92706 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.18 37.16 0.34 -1.88 16 2 C 0.00 -0.05 3.32 -91.77 -0.31 -0.35 16 3 C -0.15 -2.19 9.18 37.16 0.34 -1.85 16 4 C -0.05 -0.99 5.83 -35.65 -0.21 -1.20 16 5 C -0.19 -4.03 10.79 -39.68 -0.43 -4.46 16 6 C -0.26 -6.10 6.96 -104.53 -0.73 -6.83 16 7 C 0.04 0.98 6.46 -35.34 -0.23 0.75 16 8 O -0.12 -3.14 10.04 4.77 0.05 -3.09 16 9 C 0.33 8.41 0.77 -91.80 -0.07 8.34 16 10 O -0.57 -14.88 11.39 -35.23 -0.40 -15.28 16 11 C -0.54 -14.75 8.23 -34.44 -0.28 -15.03 16 12 H 0.07 1.80 7.60 -52.49 -0.40 1.40 16 13 C 0.07 1.98 5.26 -17.82 -0.09 1.89 16 14 N -0.88 -23.70 10.38 55.43 0.58 -23.13 16 15 Si 0.90 20.85 29.54 -169.99 -5.02 15.82 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 C -0.07 -1.51 3.17 -89.09 -0.28 -1.79 16 20 H 0.08 1.72 7.77 -51.93 -0.40 1.32 16 21 C -0.12 -2.31 8.72 37.16 0.32 -1.99 16 22 C -0.04 -0.78 6.35 -26.88 -0.17 -0.95 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.38 10.35 7.04 45.56 0.32 10.67 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.06 1.24 7.24 -51.93 -0.38 0.87 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.25 7.89 -51.93 -0.41 0.84 16 LS Contribution 302.16 15.07 4.55 4.55 Total: -1.00 -28.95 302.16 -7.09 -36.04 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.05 Total: 10.41 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -1.79 Total: -25.33 kcal Atomic # 7 Polarization: -23.70 SS G_CDS: 0.58 Total: -23.13 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.35 Total: -18.37 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.95 -7.09 -36.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458722.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.971 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds