Wall clock time and date at job start Mon Mar 30 2020 06:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47148 * 2 1 4 4 C 1.50705 * 109.47230 * 119.99931 * 2 1 3 5 5 C 1.34451 * 125.78851 * 119.99823 * 4 2 1 6 6 C 1.41508 * 106.80367 * 179.97438 * 5 4 2 7 7 C 1.34285 * 107.02041 * 359.97438 * 6 5 4 8 8 O 1.34194 * 125.78355 * 300.00211 * 4 2 1 9 9 C 1.51444 * 110.25141 * 180.02562 * 7 6 5 10 10 O 1.42899 * 110.42640 * 224.19246 * 9 7 6 11 11 C 1.50699 * 110.33938 * 101.99650 * 9 7 6 12 12 H 1.07999 * 119.99698 * 333.52176 * 11 9 7 13 13 C 1.37870 * 120.00495 * 153.52220 * 11 9 7 14 14 N 1.31518 * 119.99564 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 120.00300 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47298 * 359.97438 * 15 13 11 17 17 H 1.48509 * 109.47250 * 119.99695 * 15 13 11 18 18 H 1.48500 * 109.47029 * 239.99638 * 15 13 11 19 19 C 1.54453 * 104.99451 * 343.11928 * 9 7 6 20 20 H 1.09003 * 110.94818 * 267.42010 * 19 9 7 21 21 C 1.52996 * 110.94951 * 143.71399 * 19 9 7 22 22 C 1.51191 * 142.39321 * 179.97438 * 6 5 4 23 23 H 1.08997 * 109.47113 * 300.00073 * 1 2 3 24 24 H 1.08996 * 109.47317 * 60.00183 * 1 2 3 25 25 H 1.09000 * 109.46974 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47216 * 239.99447 * 2 1 3 27 27 H 1.09001 * 109.47005 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46848 * 299.99662 * 3 2 1 29 29 H 1.08997 * 109.47173 * 59.99964 * 3 2 1 30 30 H 1.08004 * 126.59486 * 359.97438 * 5 4 2 31 31 H 0.96699 * 113.99958 * 295.62930 * 10 9 7 32 32 H 0.97000 * 119.99762 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.47250 * 57.74370 * 21 19 9 34 34 H 1.09000 * 109.47277 * 177.73929 * 21 19 9 35 35 H 1.09004 * 109.47100 * 297.73838 * 21 19 9 36 36 H 1.09003 * 110.34594 * 77.97391 * 22 6 5 37 37 H 1.08997 * 110.34950 * 315.69491 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8086 -1.8082 1.2428 6 6 3.0381 -2.1317 2.6011 7 6 2.3909 -1.2147 3.3384 8 8 1.7807 -0.3546 2.4997 9 6 2.5894 -1.4931 4.8137 10 8 1.3528 -1.3596 5.5173 11 6 3.6217 -0.5579 5.3890 12 1 4.3872 -0.1407 4.7515 13 6 3.5890 -0.2350 6.7289 14 7 2.6565 -0.7428 7.5050 15 14 4.8681 0.9247 7.4417 16 1 5.7994 1.3548 6.3680 17 1 4.1914 2.1150 8.0168 18 1 5.6308 0.2259 8.5072 19 6 3.0905 -2.9525 4.8811 20 1 2.2585 -3.6446 5.0114 21 6 4.1230 -3.1254 5.9968 22 6 3.7433 -3.1289 3.4923 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1845 -2.3406 0.3816 31 1 0.9901 -0.4632 5.5086 32 1 2.6333 -0.5153 8.4477 33 1 3.6828 -2.8281 6.9486 34 1 4.4300 -4.1700 6.0492 35 1 4.9920 -2.5015 5.7876 36 1 4.8088 -2.9048 3.5430 37 1 3.5855 -4.1431 3.1253 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260458748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:14 Heat of formation + Delta-G solvation = -28.771416 kcal Electronic energy + Delta-G solvation = -19203.258489 eV Core-core repulsion = 16333.582196 eV Total energy + Delta-G solvation = -2869.676293 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.90983 -37.56516 -35.16076 -33.94112 -32.19816 -31.16183 -28.59078 -27.06182 -26.83041 -24.86310 -23.66817 -21.35741 -20.39189 -19.08014 -18.25365 -16.81863 -16.11297 -15.18214 -14.92197 -14.71858 -14.38720 -14.05461 -13.54147 -12.93465 -12.84614 -12.34230 -12.12237 -12.07978 -11.83757 -11.54669 -11.21334 -11.12532 -11.07204 -10.98722 -10.89822 -10.75451 -10.32519 -10.26683 -10.00126 -9.79690 -9.22129 -8.79547 -8.65432 -8.36645 -7.26307 -6.01128 -4.23391 2.56272 3.21939 3.31433 3.34036 3.43018 3.46162 4.33803 4.81028 5.04365 5.13681 5.24078 5.41559 5.65893 5.68896 5.74690 5.79629 5.85292 5.92472 5.95796 6.07764 6.23633 6.32286 6.34162 6.35170 6.47209 6.70061 6.82098 6.84420 6.94875 7.08284 7.19896 7.31581 7.53221 7.67393 7.79018 7.99990 8.13841 8.69446 9.29614 9.49448 10.92437 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024772 B = 0.007701 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.017274 B = 3634.989319 C = 4093.636430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.005 4.005 3 C -0.147 4.147 4 C -0.040 4.040 5 C -0.186 4.186 6 C -0.237 4.237 7 C -0.013 4.013 8 O -0.159 6.159 9 C 0.341 3.659 10 O -0.531 6.531 11 C -0.552 4.552 12 H 0.061 0.939 13 C 0.083 3.917 14 N -0.844 5.844 15 Si 0.885 3.115 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.281 1.281 19 C -0.057 4.057 20 H 0.064 0.936 21 C -0.118 4.118 22 C -0.038 4.038 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.132 0.868 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.079 0.921 34 H 0.022 0.978 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 -0.164 -10.300 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 C -0.205 4.205 4 C -0.090 4.090 5 C -0.206 4.206 6 C -0.238 4.238 7 C -0.065 4.065 8 O -0.055 6.055 9 C 0.299 3.701 10 O -0.334 6.334 11 C -0.590 4.590 12 H 0.079 0.921 13 C -0.124 4.124 14 N -0.479 5.479 15 Si 0.712 3.288 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.206 1.206 19 C -0.077 4.077 20 H 0.083 0.917 21 C -0.175 4.175 22 C -0.075 4.075 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.150 0.850 31 H 0.205 0.795 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.187 -0.575 -9.898 9.985 hybrid contribution 0.819 1.159 0.011 1.420 sum -0.368 0.584 -9.887 9.911 Atomic orbital electron populations 1.21853 0.94268 1.02215 1.02082 1.19578 0.95917 0.95591 0.91228 1.21855 1.01453 0.95075 1.02080 1.22076 1.04194 0.98438 0.84259 1.20758 1.04478 0.99193 0.96135 1.21080 1.07181 1.02800 0.92719 1.25834 0.94418 0.88061 0.98176 1.83787 1.59488 1.47645 1.14622 1.18458 0.84457 0.92719 0.74423 1.86388 1.37545 1.32740 1.76686 1.21331 1.13732 1.29767 0.94161 0.92120 1.24960 0.95450 0.95289 0.96666 1.70220 1.31248 1.41193 1.05192 0.86645 0.81868 0.80974 0.79288 1.19684 1.20810 1.20633 1.21762 0.97282 0.95397 0.93215 0.91743 1.21581 0.98722 0.97211 0.99983 1.20517 0.98655 0.95488 0.92873 0.92030 0.92304 0.92416 0.89116 0.92379 0.92318 0.91984 0.84958 0.79465 0.93063 0.90195 0.95917 0.92288 0.91157 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.18 37.16 0.34 -1.50 16 2 C 0.00 -0.07 3.32 -91.77 -0.31 -0.37 16 3 C -0.15 -1.90 9.17 37.16 0.34 -1.55 16 4 C -0.04 -0.75 5.83 -35.64 -0.21 -0.96 16 5 C -0.19 -3.61 10.79 -39.67 -0.43 -4.03 16 6 C -0.24 -5.23 6.96 -104.53 -0.73 -5.95 16 7 C -0.01 -0.32 7.19 -35.34 -0.25 -0.57 16 8 O -0.16 -3.59 10.66 4.78 0.05 -3.54 16 9 C 0.34 8.59 0.98 -91.80 -0.09 8.50 16 10 O -0.53 -13.93 10.88 -35.23 -0.38 -14.31 16 11 C -0.55 -14.64 6.51 -34.44 -0.22 -14.87 16 12 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 13 C 0.08 2.16 4.41 -17.82 -0.08 2.08 16 14 N -0.84 -22.65 10.44 55.43 0.58 -22.07 16 15 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.06 -1.32 3.34 -89.09 -0.30 -1.61 16 20 H 0.06 1.48 8.11 -51.93 -0.42 1.06 16 21 C -0.12 -2.61 7.99 37.16 0.30 -2.31 16 22 C -0.04 -0.79 6.34 -26.87 -0.17 -0.96 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.13 2.15 8.06 -52.48 -0.42 1.72 16 31 H 0.36 9.04 9.06 45.56 0.41 9.45 16 32 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 33 H 0.08 1.97 6.40 -51.93 -0.33 1.63 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 1.33 7.01 -51.93 -0.36 0.96 16 36 H 0.07 1.41 7.79 -51.93 -0.40 1.01 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 300.62 15.07 4.53 4.53 Total: -1.00 -28.73 300.62 -6.93 -35.66 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -4.88 Total: 8.47 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -1.80 Total: -24.11 kcal Atomic # 7 Polarization: -22.65 SS G_CDS: 0.58 Total: -22.07 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.33 Total: -17.85 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.73 -6.93 -35.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.886 kcal (2) G-P(sol) polarization free energy of solvation -28.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds