Wall clock time and date at job start Mon Mar 30 2020 06:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47148 * 2 1 4 4 C 1.50705 * 109.47230 * 119.99931 * 2 1 3 5 5 C 1.34451 * 125.78851 * 119.99823 * 4 2 1 6 6 C 1.41508 * 106.80367 * 179.97438 * 5 4 2 7 7 C 1.34285 * 107.02041 * 359.97438 * 6 5 4 8 8 O 1.34194 * 125.78355 * 300.00211 * 4 2 1 9 9 C 1.51444 * 110.25141 * 180.02562 * 7 6 5 10 10 O 1.42899 * 110.42640 * 224.19246 * 9 7 6 11 11 C 1.50699 * 110.33938 * 101.99650 * 9 7 6 12 12 H 1.07999 * 119.99698 * 333.52176 * 11 9 7 13 13 C 1.37870 * 120.00495 * 153.52220 * 11 9 7 14 14 N 1.31518 * 119.99564 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 120.00300 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47298 * 359.97438 * 15 13 11 17 17 H 1.48509 * 109.47250 * 119.99695 * 15 13 11 18 18 H 1.48500 * 109.47029 * 239.99638 * 15 13 11 19 19 C 1.54453 * 104.99451 * 343.11928 * 9 7 6 20 20 H 1.09003 * 110.94818 * 267.42010 * 19 9 7 21 21 C 1.52996 * 110.94951 * 143.71399 * 19 9 7 22 22 C 1.51191 * 142.39321 * 179.97438 * 6 5 4 23 23 H 1.08997 * 109.47113 * 300.00073 * 1 2 3 24 24 H 1.08996 * 109.47317 * 60.00183 * 1 2 3 25 25 H 1.09000 * 109.46974 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47216 * 239.99447 * 2 1 3 27 27 H 1.09001 * 109.47005 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46848 * 299.99662 * 3 2 1 29 29 H 1.08997 * 109.47173 * 59.99964 * 3 2 1 30 30 H 1.08004 * 126.59486 * 359.97438 * 5 4 2 31 31 H 0.96699 * 113.99958 * 295.62930 * 10 9 7 32 32 H 0.97000 * 119.99762 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.47250 * 57.74370 * 21 19 9 34 34 H 1.09000 * 109.47277 * 177.73929 * 21 19 9 35 35 H 1.09004 * 109.47100 * 297.73838 * 21 19 9 36 36 H 1.09003 * 110.34594 * 77.97391 * 22 6 5 37 37 H 1.08997 * 110.34950 * 315.69491 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8086 -1.8082 1.2428 6 6 3.0381 -2.1317 2.6011 7 6 2.3909 -1.2147 3.3384 8 8 1.7807 -0.3546 2.4997 9 6 2.5894 -1.4931 4.8137 10 8 1.3528 -1.3596 5.5173 11 6 3.6217 -0.5579 5.3890 12 1 4.3872 -0.1407 4.7515 13 6 3.5890 -0.2350 6.7289 14 7 2.6565 -0.7428 7.5050 15 14 4.8681 0.9247 7.4417 16 1 5.7994 1.3548 6.3680 17 1 4.1914 2.1150 8.0168 18 1 5.6308 0.2259 8.5072 19 6 3.0905 -2.9525 4.8811 20 1 2.2585 -3.6446 5.0114 21 6 4.1230 -3.1254 5.9968 22 6 3.7433 -3.1289 3.4923 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1845 -2.3406 0.3816 31 1 0.9901 -0.4632 5.5086 32 1 2.6333 -0.5153 8.4477 33 1 3.6828 -2.8281 6.9486 34 1 4.4300 -4.1700 6.0492 35 1 4.9920 -2.5015 5.7876 36 1 4.8088 -2.9048 3.5430 37 1 3.5855 -4.1431 3.1253 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260458748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:13 Heat of formation + Delta-G solvation = -46.034261 kcal Electronic energy + Delta-G solvation = -19204.007062 eV Core-core repulsion = 16333.582196 eV Total energy + Delta-G solvation = -2870.424867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.53558 -39.35584 -36.33944 -35.80457 -34.21331 -32.83839 -30.22448 -28.72028 -28.05751 -26.57169 -25.44950 -22.72890 -21.96673 -20.91956 -19.82472 -18.74395 -17.82327 -16.88072 -16.71262 -16.29015 -15.91227 -15.58500 -15.19703 -14.43427 -14.02096 -13.91147 -13.84073 -13.53068 -13.44532 -13.06137 -12.99291 -12.78803 -12.71382 -12.39968 -12.16957 -12.13460 -12.06910 -11.88834 -11.86312 -11.55297 -11.08315 -10.68902 -10.38165 -10.30378 -8.92668 -8.01325 -6.30015 0.96635 1.37056 1.41500 1.50552 1.78760 1.88936 2.40683 3.12061 3.45834 3.83341 3.94464 4.08813 4.17288 4.19248 4.29437 4.47520 4.57964 4.66885 4.75726 4.82650 4.83847 4.92371 4.96523 5.01904 5.09622 5.13755 5.22301 5.32477 5.39630 5.45687 5.49684 5.56055 5.66308 5.86600 5.87680 6.03899 6.47664 6.63917 7.26176 7.47463 8.91235 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024772 B = 0.007701 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.017274 B = 3634.989319 C = 4093.636430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.007 4.007 3 C -0.145 4.145 4 C -0.030 4.030 5 C -0.200 4.200 6 C -0.234 4.234 7 C -0.066 4.066 8 O -0.182 6.182 9 C 0.328 3.672 10 O -0.545 6.545 11 C -0.562 4.562 12 H 0.042 0.958 13 C 0.050 3.950 14 N -0.866 5.866 15 Si 0.940 3.060 16 H -0.276 1.276 17 H -0.279 1.279 18 H -0.272 1.272 19 C -0.061 4.061 20 H 0.057 0.943 21 C -0.108 4.108 22 C -0.032 4.032 23 H 0.039 0.961 24 H 0.093 0.907 25 H 0.055 0.945 26 H 0.124 0.876 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.039 0.961 30 H 0.168 0.832 31 H 0.357 0.643 32 H 0.260 0.740 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.439 -0.398 -12.503 12.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 C -0.202 4.202 4 C -0.080 4.080 5 C -0.219 4.219 6 C -0.236 4.236 7 C -0.117 4.117 8 O -0.079 6.079 9 C 0.287 3.713 10 O -0.348 6.348 11 C -0.600 4.600 12 H 0.060 0.940 13 C -0.155 4.155 14 N -0.500 5.500 15 Si 0.766 3.234 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.198 1.198 19 C -0.080 4.080 20 H 0.076 0.924 21 C -0.165 4.165 22 C -0.069 4.069 23 H 0.059 0.941 24 H 0.112 0.888 25 H 0.074 0.926 26 H 0.142 0.858 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.058 0.942 30 H 0.186 0.814 31 H 0.201 0.799 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.595 -0.817 -12.102 12.144 hybrid contribution 0.588 1.262 0.601 1.516 sum -0.007 0.445 -11.501 11.510 Atomic orbital electron populations 1.21843 0.93189 1.02322 1.02772 1.19930 0.96823 0.95981 0.89742 1.21850 1.01099 0.94536 1.02756 1.23199 1.02469 0.98144 0.84147 1.21172 1.04951 0.99789 0.95987 1.21523 1.05929 1.02064 0.94057 1.25565 0.97660 0.90270 0.98204 1.83753 1.59981 1.48040 1.16132 1.18610 0.83483 0.93800 0.75384 1.86365 1.38408 1.32516 1.77474 1.21367 1.13887 1.30390 0.94348 0.94001 1.25483 0.96896 0.96380 0.96717 1.70314 1.32393 1.42029 1.05314 0.85797 0.79801 0.79334 0.78492 1.20077 1.20521 1.19768 1.21785 0.97365 0.93849 0.95021 0.92420 1.21449 0.97838 0.99036 0.98194 1.20491 0.98403 0.96832 0.91187 0.94138 0.88832 0.92632 0.85826 0.92938 0.88751 0.94212 0.81411 0.79858 0.93006 0.93074 0.92557 0.93196 0.90639 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.18 71.98 0.66 -2.58 16 2 C -0.01 -0.17 3.32 -11.54 -0.04 -0.20 16 3 C -0.15 -3.39 9.17 71.98 0.66 -2.73 16 4 C -0.03 -1.10 5.83 24.82 0.14 -0.95 16 5 C -0.20 -7.32 10.79 22.21 0.24 -7.08 16 6 C -0.23 -10.18 6.96 -19.81 -0.14 -10.32 16 7 C -0.07 -3.25 7.19 25.02 0.18 -3.07 16 8 O -0.18 -8.34 10.66 -5.80 -0.06 -8.40 16 9 C 0.33 17.02 0.98 -11.56 -0.01 17.01 16 10 O -0.55 -29.85 10.88 -148.98 -1.62 -31.47 16 11 C -0.56 -30.68 6.51 25.60 0.17 -30.52 16 12 H 0.04 2.38 7.81 -2.91 -0.02 2.36 16 13 C 0.05 2.65 4.41 84.65 0.37 3.02 16 14 N -0.87 -47.58 10.44 21.45 0.22 -47.35 16 15 Si 0.94 42.47 29.54 68.60 2.03 44.49 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 19 C -0.06 -2.81 3.34 -9.80 -0.03 -2.85 16 20 H 0.06 2.68 8.11 -2.39 -0.02 2.66 16 21 C -0.11 -4.77 7.99 71.98 0.57 -4.20 16 22 C -0.03 -1.28 6.34 30.50 0.19 -1.09 16 23 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.12 2.32 8.10 -2.39 -0.02 2.30 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.17 4.79 8.06 -2.91 -0.02 4.77 16 31 H 0.36 19.02 9.06 -74.06 -0.67 18.35 16 32 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 33 H 0.05 2.54 6.40 -2.39 -0.02 2.53 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 2.24 7.01 -2.38 -0.02 2.23 16 36 H 0.08 2.94 7.79 -2.39 -0.02 2.92 16 37 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -63.52 300.62 3.93 -59.59 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.39 Total: 28.69 kcal Atomic # 6 Polarization: -48.52 SS G_CDS: 2.97 Total: -45.55 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.22 Total: -47.35 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -1.68 Total: -39.87 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -63.52 3.93 -59.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.557 kcal (2) G-P(sol) polarization free energy of solvation -63.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds