Wall clock time and date at job start Mon Mar 30 2020 06:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47205 * 2 1 4 4 C 1.50698 * 109.47045 * 119.99904 * 2 1 3 5 5 C 1.34452 * 125.78330 * 119.98525 * 4 2 1 6 6 C 1.41510 * 106.80187 * 180.02562 * 5 4 2 7 7 C 1.34290 * 107.02284 * 0.02562 * 6 5 4 8 8 O 1.34191 * 125.79141 * 300.02395 * 4 2 1 9 9 C 1.51446 * 110.25186 * 179.97438 * 7 6 5 10 10 O 1.42903 * 110.33332 * 135.76772 * 9 7 6 11 11 C 1.50693 * 110.33670 * 258.00642 * 9 7 6 12 12 H 1.08000 * 120.00278 * 25.47917 * 11 9 7 13 13 C 1.37884 * 120.00232 * 205.48020 * 11 9 7 14 14 N 1.31510 * 119.99780 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00155 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47073 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46982 * 119.99988 * 15 13 11 18 18 H 1.48496 * 109.47465 * 240.00124 * 15 13 11 19 19 C 1.54440 * 104.99870 * 16.89029 * 9 7 6 20 20 H 1.09002 * 110.95587 * 92.56904 * 19 9 7 21 21 C 1.52999 * 110.98306 * 216.26989 * 19 9 7 22 22 C 1.51200 * 142.39668 * 180.02562 * 6 5 4 23 23 H 1.08996 * 109.46774 * 300.00069 * 1 2 3 24 24 H 1.08997 * 109.47273 * 59.99979 * 1 2 3 25 25 H 1.08994 * 109.47087 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47257 * 240.00133 * 2 1 3 27 27 H 1.08997 * 109.47022 * 300.00174 * 3 2 1 28 28 H 1.09004 * 109.46761 * 59.99976 * 3 2 1 29 29 H 1.08991 * 109.46997 * 179.97438 * 3 2 1 30 30 H 1.07998 * 126.60316 * 0.03322 * 5 4 2 31 31 H 0.96707 * 113.99711 * 64.42593 * 10 9 7 32 32 H 0.97004 * 120.00260 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.47452 * 178.48577 * 21 19 9 34 34 H 1.09003 * 109.47301 * 298.48659 * 21 19 9 35 35 H 1.08998 * 109.47174 * 58.48647 * 21 19 9 36 36 H 1.08989 * 110.35098 * 44.30466 * 22 6 5 37 37 H 1.09003 * 110.43442 * 282.07036 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8083 -1.8083 1.2427 6 6 3.0370 -2.1325 2.6010 7 6 2.3885 -1.2164 3.3384 8 8 1.7804 -0.3549 2.4997 9 6 2.5850 -1.4964 4.8137 10 8 2.8725 -0.2850 5.5150 11 6 1.3592 -2.1576 5.3891 12 1 0.7017 -2.7267 4.7487 13 6 1.0771 -2.0361 6.7333 14 7 1.8774 -1.3427 7.5131 15 14 -0.4428 -2.8552 7.4464 16 1 -1.1720 -3.5697 6.3680 17 1 -0.0364 -3.8249 8.4951 18 1 -1.3277 -1.8227 8.0430 19 6 3.7938 -2.4553 4.8810 20 1 4.7238 -1.9018 5.0110 21 6 3.6136 -3.4864 5.9969 22 6 3.7421 -3.1299 3.4922 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 3.1848 -2.3404 0.3816 31 1 2.1484 0.3559 5.5063 32 1 1.6788 -1.2569 8.4587 33 1 4.4660 -4.1657 6.0051 34 1 3.5475 -2.9749 6.9572 35 1 2.6990 -4.0534 5.8236 36 1 4.7506 -3.3194 3.1251 37 1 3.1769 -4.0605 3.5435 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260458774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:16 Heat of formation + Delta-G solvation = -29.073902 kcal Electronic energy + Delta-G solvation = -19203.608605 eV Core-core repulsion = 16333.919195 eV Total energy + Delta-G solvation = -2869.689410 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.91154 -37.56480 -35.16156 -33.93596 -32.21392 -31.15495 -28.58741 -27.06288 -26.83132 -24.85965 -23.67171 -21.35802 -20.39294 -19.07684 -18.25408 -16.81609 -16.11404 -15.18387 -14.92214 -14.71756 -14.38821 -14.04813 -13.54374 -12.93536 -12.84345 -12.34236 -12.12482 -12.08114 -11.84193 -11.55079 -11.20968 -11.12662 -11.07184 -10.98814 -10.89649 -10.75303 -10.32358 -10.26503 -9.99758 -9.79567 -9.21632 -8.79486 -8.65380 -8.36559 -7.26427 -6.01553 -4.23171 2.56144 3.21930 3.31412 3.33951 3.42940 3.45990 4.33763 4.80994 5.04297 5.13729 5.23993 5.41580 5.66089 5.68828 5.74701 5.79524 5.85461 5.92379 5.95801 6.07855 6.23793 6.32220 6.34091 6.35134 6.47617 6.71198 6.82645 6.84406 6.94857 7.08364 7.20151 7.32715 7.53828 7.68429 7.78264 7.99987 8.13774 8.69502 9.29113 9.49232 10.92507 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024877 B = 0.007686 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.248166 B = 3641.915176 C = 4096.883056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.005 4.005 3 C -0.147 4.147 4 C -0.040 4.040 5 C -0.186 4.186 6 C -0.236 4.236 7 C -0.013 4.013 8 O -0.159 6.159 9 C 0.342 3.658 10 O -0.532 6.532 11 C -0.553 4.553 12 H 0.061 0.939 13 C 0.083 3.917 14 N -0.844 5.844 15 Si 0.885 3.115 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.282 1.282 19 C -0.057 4.057 20 H 0.064 0.936 21 C -0.118 4.118 22 C -0.038 4.038 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.133 0.867 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.022 0.978 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 0.944 -10.314 10.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 C -0.204 4.204 4 C -0.090 4.090 5 C -0.206 4.206 6 C -0.237 4.237 7 C -0.065 4.065 8 O -0.055 6.055 9 C 0.300 3.700 10 O -0.334 6.334 11 C -0.591 4.591 12 H 0.079 0.921 13 C -0.123 4.123 14 N -0.478 5.478 15 Si 0.712 3.288 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.208 1.208 19 C -0.076 4.076 20 H 0.082 0.918 21 C -0.175 4.175 22 C -0.075 4.075 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.205 0.795 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.901 0.956 -9.912 9.999 hybrid contribution -1.361 -0.382 0.017 1.414 sum -0.460 0.574 -9.895 9.922 Atomic orbital electron populations 1.21854 0.94225 1.02303 1.02080 1.19577 0.95958 0.95551 0.91227 1.21855 1.01364 0.95118 1.02081 1.22073 1.04018 0.98616 0.84253 1.20759 1.04542 0.99125 0.96138 1.21083 1.07449 1.02502 0.92715 1.25826 0.93257 0.89247 0.98173 1.83783 1.59605 1.47532 1.14624 1.18450 0.93462 0.83686 0.74386 1.86396 1.42477 1.27698 1.76875 1.21322 1.09138 1.34814 0.93793 0.92113 1.24958 0.96089 0.94614 0.96674 1.70211 1.35286 1.37403 1.04897 0.86647 0.83299 0.79545 0.79293 1.19678 1.20630 1.20808 1.21754 0.97000 0.95660 0.93202 0.91775 1.21587 0.99100 0.97091 0.99754 1.20510 0.97901 0.96246 0.92877 0.91985 0.92317 0.92378 0.89114 0.92303 0.92031 0.92414 0.84955 0.79507 0.93053 0.95945 0.90459 0.91955 0.92815 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.18 37.16 0.34 -1.55 16 2 C 0.00 -0.07 3.32 -91.77 -0.31 -0.37 16 3 C -0.15 -1.84 9.18 37.16 0.34 -1.50 16 4 C -0.04 -0.75 5.83 -35.65 -0.21 -0.96 16 5 C -0.19 -3.60 10.79 -39.67 -0.43 -4.03 16 6 C -0.24 -5.22 6.96 -104.52 -0.73 -5.95 16 7 C -0.01 -0.32 7.18 -35.33 -0.25 -0.58 16 8 O -0.16 -3.59 10.66 4.81 0.05 -3.54 16 9 C 0.34 8.61 0.96 -91.81 -0.09 8.52 16 10 O -0.53 -13.95 10.93 -35.23 -0.39 -14.33 16 11 C -0.55 -14.66 6.47 -34.44 -0.22 -14.88 16 12 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 13 C 0.08 2.17 4.38 -17.82 -0.08 2.09 16 14 N -0.84 -22.64 10.46 55.43 0.58 -22.06 16 15 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 C -0.06 -1.31 3.33 -89.09 -0.30 -1.61 16 20 H 0.06 1.48 8.11 -51.93 -0.42 1.06 16 21 C -0.12 -2.62 7.94 37.16 0.30 -2.33 16 22 C -0.04 -0.79 6.34 -26.86 -0.17 -0.96 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 31 H 0.36 9.00 9.07 45.56 0.41 9.42 16 32 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 1.89 6.57 -51.93 -0.34 1.55 16 35 H 0.06 1.42 6.85 -51.93 -0.36 1.06 16 36 H 0.05 0.98 8.14 -51.94 -0.42 0.56 16 37 H 0.07 1.42 7.85 -51.93 -0.41 1.01 16 LS Contribution 300.64 15.07 4.53 4.53 Total: -1.00 -28.74 300.64 -6.93 -35.67 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.88 Total: 8.45 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -1.80 Total: -24.10 kcal Atomic # 7 Polarization: -22.64 SS G_CDS: 0.58 Total: -22.06 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.33 Total: -17.87 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.74 -6.93 -35.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.601 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds