Wall clock time and date at job start Mon Mar 30 2020 06:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47205 * 2 1 4 4 C 1.50698 * 109.47045 * 119.99904 * 2 1 3 5 5 C 1.34452 * 125.78330 * 119.98525 * 4 2 1 6 6 C 1.41510 * 106.80187 * 180.02562 * 5 4 2 7 7 C 1.34290 * 107.02284 * 0.02562 * 6 5 4 8 8 O 1.34191 * 125.79141 * 300.02395 * 4 2 1 9 9 C 1.51446 * 110.25186 * 179.97438 * 7 6 5 10 10 O 1.42903 * 110.33332 * 135.76772 * 9 7 6 11 11 C 1.50693 * 110.33670 * 258.00642 * 9 7 6 12 12 H 1.08000 * 120.00278 * 25.47917 * 11 9 7 13 13 C 1.37884 * 120.00232 * 205.48020 * 11 9 7 14 14 N 1.31510 * 119.99780 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00155 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47073 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46982 * 119.99988 * 15 13 11 18 18 H 1.48496 * 109.47465 * 240.00124 * 15 13 11 19 19 C 1.54440 * 104.99870 * 16.89029 * 9 7 6 20 20 H 1.09002 * 110.95587 * 92.56904 * 19 9 7 21 21 C 1.52999 * 110.98306 * 216.26989 * 19 9 7 22 22 C 1.51200 * 142.39668 * 180.02562 * 6 5 4 23 23 H 1.08996 * 109.46774 * 300.00069 * 1 2 3 24 24 H 1.08997 * 109.47273 * 59.99979 * 1 2 3 25 25 H 1.08994 * 109.47087 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47257 * 240.00133 * 2 1 3 27 27 H 1.08997 * 109.47022 * 300.00174 * 3 2 1 28 28 H 1.09004 * 109.46761 * 59.99976 * 3 2 1 29 29 H 1.08991 * 109.46997 * 179.97438 * 3 2 1 30 30 H 1.07998 * 126.60316 * 0.03322 * 5 4 2 31 31 H 0.96707 * 113.99711 * 64.42593 * 10 9 7 32 32 H 0.97004 * 120.00260 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.47452 * 178.48577 * 21 19 9 34 34 H 1.09003 * 109.47301 * 298.48659 * 21 19 9 35 35 H 1.08998 * 109.47174 * 58.48647 * 21 19 9 36 36 H 1.08989 * 110.35098 * 44.30466 * 22 6 5 37 37 H 1.09003 * 110.43442 * 282.07036 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8083 -1.8083 1.2427 6 6 3.0370 -2.1325 2.6010 7 6 2.3885 -1.2164 3.3384 8 8 1.7804 -0.3549 2.4997 9 6 2.5850 -1.4964 4.8137 10 8 2.8725 -0.2850 5.5150 11 6 1.3592 -2.1576 5.3891 12 1 0.7017 -2.7267 4.7487 13 6 1.0771 -2.0361 6.7333 14 7 1.8774 -1.3427 7.5131 15 14 -0.4428 -2.8552 7.4464 16 1 -1.1720 -3.5697 6.3680 17 1 -0.0364 -3.8249 8.4951 18 1 -1.3277 -1.8227 8.0430 19 6 3.7938 -2.4553 4.8810 20 1 4.7238 -1.9018 5.0110 21 6 3.6136 -3.4864 5.9969 22 6 3.7421 -3.1299 3.4922 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 3.1848 -2.3404 0.3816 31 1 2.1484 0.3559 5.5063 32 1 1.6788 -1.2569 8.4587 33 1 4.4660 -4.1657 6.0051 34 1 3.5475 -2.9749 6.9572 35 1 2.6990 -4.0534 5.8236 36 1 4.7506 -3.3194 3.1251 37 1 3.1769 -4.0605 3.5435 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260458774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:16 Heat of formation + Delta-G solvation = -46.362495 kcal Electronic energy + Delta-G solvation = -19204.358295 eV Core-core repulsion = 16333.919195 eV Total energy + Delta-G solvation = -2870.439100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.53689 -39.35639 -36.33917 -35.80002 -34.22813 -32.83289 -30.22294 -28.72194 -28.05747 -26.56981 -25.45370 -22.72931 -21.96775 -20.91770 -19.82494 -18.74181 -17.82401 -16.88261 -16.70955 -16.29012 -15.91341 -15.58434 -15.19641 -14.43162 -14.02163 -13.91313 -13.84085 -13.53842 -13.45011 -13.06153 -12.99235 -12.78629 -12.71279 -12.39836 -12.16913 -12.13441 -12.07185 -11.88358 -11.86578 -11.55140 -11.07901 -10.68836 -10.38124 -10.30296 -8.92772 -8.01753 -6.29836 0.96566 1.37099 1.41550 1.50574 1.78705 1.88759 2.40690 3.12056 3.45897 3.83409 3.94423 4.08968 4.17248 4.19256 4.29401 4.47775 4.58011 4.66880 4.75754 4.83014 4.84000 4.92407 4.96516 5.02137 5.09384 5.13869 5.22366 5.32524 5.39812 5.45919 5.49819 5.56582 5.66611 5.86459 5.87717 6.03867 6.47631 6.63935 7.25900 7.47272 8.91277 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024877 B = 0.007686 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.248166 B = 3641.915176 C = 4096.883056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.007 4.007 3 C -0.144 4.144 4 C -0.030 4.030 5 C -0.200 4.200 6 C -0.234 4.234 7 C -0.066 4.066 8 O -0.182 6.182 9 C 0.329 3.671 10 O -0.546 6.546 11 C -0.563 4.563 12 H 0.042 0.958 13 C 0.050 3.950 14 N -0.865 5.865 15 Si 0.940 3.060 16 H -0.276 1.276 17 H -0.272 1.272 18 H -0.279 1.279 19 C -0.061 4.061 20 H 0.057 0.943 21 C -0.108 4.108 22 C -0.032 4.032 23 H 0.039 0.961 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.124 0.876 27 H 0.093 0.907 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.168 0.832 31 H 0.357 0.643 32 H 0.260 0.740 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 0.315 -12.523 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 C -0.201 4.201 4 C -0.079 4.079 5 C -0.219 4.219 6 C -0.235 4.235 7 C -0.117 4.117 8 O -0.079 6.079 9 C 0.288 3.712 10 O -0.349 6.349 11 C -0.601 4.601 12 H 0.060 0.940 13 C -0.154 4.154 14 N -0.500 5.500 15 Si 0.766 3.234 16 H -0.201 1.201 17 H -0.198 1.198 18 H -0.205 1.205 19 C -0.080 4.080 20 H 0.075 0.925 21 C -0.165 4.165 22 C -0.069 4.069 23 H 0.058 0.942 24 H 0.112 0.888 25 H 0.071 0.929 26 H 0.142 0.858 27 H 0.112 0.888 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.186 0.814 31 H 0.201 0.799 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.923 0.318 -12.123 12.162 hybrid contribution -1.379 -0.129 0.609 1.513 sum -0.456 0.189 -11.514 11.524 Atomic orbital electron populations 1.21849 0.93460 1.02173 1.02759 1.19931 0.96593 0.96215 0.89739 1.21844 1.01227 0.94281 1.02774 1.23196 1.02280 0.98326 0.84143 1.21172 1.05068 0.99675 0.95985 1.21525 1.06248 1.01720 0.94056 1.25555 0.96398 0.91554 0.98195 1.83749 1.60066 1.47950 1.16130 1.18599 0.93934 0.83310 0.75360 1.86372 1.42524 1.28317 1.77656 1.21358 1.09655 1.35062 0.93978 0.94000 1.25481 0.98257 0.94973 0.96721 1.70306 1.36494 1.38187 1.05020 0.85799 0.80375 0.78772 0.78488 1.20075 1.19759 1.20518 1.21777 0.95675 0.95528 0.95008 0.92471 1.21450 1.00023 0.97034 0.98001 1.20484 0.99549 0.95700 0.91186 0.94208 0.88752 0.92937 0.85826 0.88832 0.94133 0.92633 0.81409 0.79867 0.92994 0.92535 0.93255 0.93063 0.89859 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.18 71.98 0.66 -2.72 16 2 C -0.01 -0.17 3.32 -11.54 -0.04 -0.20 16 3 C -0.14 -3.23 9.18 71.98 0.66 -2.57 16 4 C -0.03 -1.09 5.83 24.82 0.14 -0.95 16 5 C -0.20 -7.32 10.79 22.21 0.24 -7.08 16 6 C -0.23 -10.17 6.96 -19.80 -0.14 -10.31 16 7 C -0.07 -3.25 7.18 25.02 0.18 -3.07 16 8 O -0.18 -8.33 10.66 -5.72 -0.06 -8.39 16 9 C 0.33 17.06 0.96 -11.56 -0.01 17.05 16 10 O -0.55 -29.89 10.93 -148.98 -1.63 -31.52 16 11 C -0.56 -30.71 6.47 25.60 0.17 -30.55 16 12 H 0.04 2.38 7.81 -2.91 -0.02 2.36 16 13 C 0.05 2.68 4.38 84.66 0.37 3.05 16 14 N -0.87 -47.55 10.46 21.45 0.22 -47.33 16 15 Si 0.94 42.44 29.54 68.60 2.03 44.47 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 19 C -0.06 -2.80 3.33 -9.80 -0.03 -2.84 16 20 H 0.06 2.66 8.11 -2.39 -0.02 2.64 16 21 C -0.11 -4.78 7.94 71.98 0.57 -4.21 16 22 C -0.03 -1.29 6.34 30.51 0.19 -1.09 16 23 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.12 2.32 8.10 -2.39 -0.02 2.30 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 30 H 0.17 4.79 8.06 -2.91 -0.02 4.77 16 31 H 0.36 18.96 9.07 -74.05 -0.67 18.29 16 32 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 2.44 6.57 -2.39 -0.02 2.43 16 35 H 0.05 2.34 6.85 -2.39 -0.02 2.32 16 36 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.08 2.94 7.85 -2.39 -0.02 2.92 16 Total: -1.00 -63.55 300.64 3.92 -59.63 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.39 Total: 28.63 kcal Atomic # 6 Polarization: -48.46 SS G_CDS: 2.97 Total: -45.49 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.22 Total: -47.33 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -1.69 Total: -39.91 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -63.55 3.92 -59.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.270 kcal (2) G-P(sol) polarization free energy of solvation -63.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds